Wall clock time and date at job start Tue Mar 31 2020 20:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34783 * 120.00029 * 2 1 4 4 O 1.21777 * 120.00102 * 185.96898 * 3 2 1 5 5 C 1.41715 * 119.99889 * 5.95613 * 3 2 1 6 6 S 1.75657 * 125.10059 * 7.44440 * 5 3 2 7 7 C 1.75563 * 91.21289 * 179.97438 * 6 5 3 8 8 C 1.34196 * 110.67685 * 0.26416 * 7 6 5 9 9 C 1.37156 * 125.10320 * 187.73681 * 5 3 2 10 10 O 1.37646 * 124.48737 * 0.18358 * 9 5 3 11 11 C 1.43376 * 114.51882 * 163.37024 * 10 9 5 12 12 C 1.53223 * 109.14092 * 46.46389 * 11 10 9 13 13 O 1.38240 * 124.14135 * 180.02562 * 8 7 6 14 14 C 1.46498 * 120.00434 * 179.97438 * 2 1 3 15 15 H 1.08999 * 110.64457 * 181.69168 * 14 2 1 16 16 C 1.55158 * 110.87127 * 304.93864 * 14 2 1 17 17 C 1.55120 * 101.48820 * 82.76307 * 16 14 2 18 18 N 1.47428 * 104.72386 * 37.29493 * 17 16 14 19 19 C 1.36934 * 125.64765 * 155.81554 * 18 17 16 20 20 H 1.08006 * 119.99773 * 189.32677 * 19 18 17 21 21 C 1.38811 * 120.00343 * 9.32556 * 19 18 17 22 22 N 1.31624 * 119.99635 * 11.30054 * 21 19 18 23 23 Si 1.86799 * 120.00244 * 191.30382 * 21 19 18 24 24 H 1.48496 * 109.46911 * 265.18011 * 23 21 19 25 25 H 1.48501 * 109.46917 * 25.17666 * 23 21 19 26 26 H 1.48499 * 109.47274 * 145.17973 * 23 21 19 27 27 C 1.47023 * 108.70104 * 335.55690 * 18 17 16 28 28 H 1.09007 * 109.47083 * 276.05528 * 1 2 3 29 29 H 1.09001 * 109.47327 * 36.05994 * 1 2 3 30 30 H 1.09005 * 109.47298 * 156.06189 * 1 2 3 31 31 H 1.08001 * 124.65678 * 180.02562 * 7 6 5 32 32 H 1.09005 * 109.52236 * 286.56700 * 11 10 9 33 33 H 1.08999 * 109.57933 * 166.39823 * 11 10 9 34 34 H 1.09005 * 109.52087 * 177.82658 * 12 11 10 35 35 H 1.09002 * 109.57522 * 57.66608 * 12 11 10 36 36 H 1.09005 * 111.00371 * 201.00470 * 16 14 2 37 37 H 1.08999 * 111.00288 * 324.81326 * 16 14 2 38 38 H 1.09006 * 110.50043 * 278.45308 * 17 16 14 39 39 H 1.09001 * 110.34388 * 156.06109 * 17 16 14 40 40 H 0.97005 * 119.99759 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.88194 * 120.70234 * 27 18 17 42 42 H 1.08998 * 109.87619 * 241.87054 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1701 -0.1097 5 6 1.4360 2.3912 0.1274 6 16 -0.2790 2.5395 0.4772 7 6 -0.1747 4.2914 0.4325 8 6 1.0799 4.6847 0.1639 9 6 1.9916 3.6377 -0.0097 10 8 3.3173 3.8730 -0.2954 11 6 3.5999 5.2006 -0.7573 12 6 2.8913 6.2102 0.1515 13 8 1.4743 6.0059 0.0644 14 6 2.1975 -1.2687 0.0006 15 1 3.2726 -1.0916 0.0306 16 6 1.7549 -2.1620 1.1894 17 6 0.4729 -2.8230 0.6187 18 7 0.7776 -3.0653 -0.8033 19 6 0.1852 -4.0114 -1.5964 20 1 0.5792 -4.2140 -2.5814 21 6 -0.9217 -4.7102 -1.1345 22 7 -1.5372 -4.3183 -0.0391 23 14 -1.5376 -6.2068 -2.0675 24 1 -2.6212 -5.7989 -2.9973 25 1 -0.4190 -6.8023 -2.8417 26 1 -2.0621 -7.2087 -1.1051 27 6 1.8183 -2.1187 -1.2304 28 1 -0.3634 0.1084 1.0220 29 1 -0.3634 0.8308 -0.6049 30 1 -0.3634 -0.9393 -0.4170 31 1 -1.0068 4.9605 0.5947 32 1 3.2395 5.3150 -1.7797 33 1 4.6753 5.3762 -0.7283 34 1 3.1332 7.2230 -0.1708 35 1 3.2191 6.0676 1.1813 36 1 2.5142 -2.9093 1.4205 37 1 1.5242 -1.5582 2.0671 38 1 -0.3789 -2.1498 0.7148 39 1 0.2726 -3.7648 1.1295 40 1 -2.3105 -4.8069 0.2840 41 1 2.6917 -2.6643 -1.5875 42 1 1.4320 -1.4750 -2.0206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033554102.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:07 Heat of formation + Delta-G solvation = -15.161957 kcal Electronic energy + Delta-G solvation = -27734.794583 eV Core-core repulsion = 23809.573013 eV Total energy + Delta-G solvation = -3925.221570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19171 -39.86939 -37.58283 -37.06456 -35.65721 -34.43748 -32.24204 -30.12610 -29.97076 -29.02198 -28.04517 -26.37945 -25.05265 -24.00113 -23.91396 -21.40689 -20.25890 -19.52619 -19.36082 -18.35705 -17.36441 -17.14588 -16.90435 -16.38405 -15.88553 -15.53876 -15.09272 -14.94707 -14.69835 -14.51579 -14.49867 -13.90064 -13.79037 -13.47075 -13.18668 -12.88543 -12.61338 -12.35748 -12.24545 -11.81565 -11.64026 -11.37635 -11.21968 -11.12039 -10.98010 -10.86858 -10.85221 -10.74288 -10.25202 -10.06619 -9.97896 -9.68028 -9.49953 -8.72454 -8.59676 -8.33981 -7.92044 -6.84967 -5.79663 -3.10743 0.34056 1.30010 1.57299 2.07374 3.03133 3.15234 3.35664 3.38129 3.40994 3.44724 3.46586 3.90402 4.30691 4.47665 4.55744 4.60202 4.96127 4.99866 5.15298 5.22599 5.30402 5.32981 5.41875 5.42574 5.47692 5.67099 5.74838 5.81313 5.90682 6.17735 6.27058 6.31705 6.44421 6.53642 6.59526 6.71481 6.89373 7.04879 7.41910 7.51072 7.67891 7.74751 8.20849 8.40274 9.15359 9.76983 10.43990 11.33665 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.002964 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.814324 B = 9443.422043 C = 9991.859285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.592 5.592 3 C 0.587 3.413 4 O -0.528 6.528 5 C -0.278 4.278 6 S 0.255 5.745 7 C -0.247 4.247 8 C 0.028 3.972 9 C 0.124 3.876 10 O -0.261 6.261 11 C 0.013 3.987 12 C 0.018 3.982 13 O -0.296 6.296 14 C 0.130 3.870 15 H 0.102 0.898 16 C -0.157 4.157 17 C 0.163 3.837 18 N -0.602 5.602 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.290 1.290 27 C 0.126 3.874 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.130 0.870 31 H 0.174 0.826 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.253 0.747 41 H 0.035 0.965 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.467 20.508 2.853 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.324 5.324 3 C 0.376 3.624 4 O -0.408 6.408 5 C -0.398 4.398 6 S 0.520 5.480 7 C -0.383 4.383 8 C -0.028 4.028 9 C 0.062 3.938 10 O -0.174 6.174 11 C -0.064 4.064 12 C -0.058 4.058 13 O -0.212 6.212 14 C 0.027 3.973 15 H 0.120 0.880 16 C -0.196 4.196 17 C 0.039 3.961 18 N -0.329 5.329 19 C -0.357 4.357 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.216 1.216 27 C -0.001 4.001 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.192 0.808 32 H 0.096 0.904 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.803 19.390 3.052 19.994 hybrid contribution 0.700 0.578 -0.751 1.178 sum 4.502 19.969 2.301 20.599 Atomic orbital electron populations 1.22370 0.79807 1.05479 1.02100 1.47639 1.06807 1.05568 1.72420 1.15606 0.86937 0.82171 0.77677 1.90840 1.12856 1.86718 1.50341 1.22610 0.99058 0.95760 1.22378 1.85076 1.00915 0.94112 1.67859 1.25788 0.99255 1.03992 1.09231 1.18228 0.93354 0.83906 1.07334 1.18822 0.85017 0.91404 0.98522 1.87186 1.19185 1.30405 1.80615 1.23699 1.02941 0.81523 0.98217 1.23602 0.79951 1.01237 1.01001 1.87054 1.23525 1.20275 1.90318 1.22119 0.96516 0.81704 0.97001 0.87993 1.23401 1.01381 0.98466 0.96391 1.21684 0.90983 0.99080 0.84364 1.44545 1.43320 1.37737 1.07333 1.19008 1.07645 1.10994 0.98015 0.90648 1.24770 0.96994 1.00204 0.98239 1.69946 1.21813 1.40531 1.24186 0.86150 0.78521 0.82721 0.78652 1.21673 1.20655 1.21644 1.21661 0.93000 0.91306 0.94134 0.91841 0.91377 0.85200 0.80807 0.90409 0.85799 0.86034 0.90505 0.90821 0.91817 0.94499 0.91306 0.93694 0.94725 0.95351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.76 7.04 59.84 0.42 1.18 16 2 N -0.59 -10.43 2.83 -175.20 -0.49 -10.93 16 3 C 0.59 10.68 7.46 -14.93 -0.11 10.57 16 4 O -0.53 -11.09 15.28 -11.54 -0.18 -11.27 16 5 C -0.28 -4.32 6.03 -38.65 -0.23 -4.55 16 6 S 0.25 2.99 17.80 -107.50 -1.91 1.08 16 7 C -0.25 -2.72 11.17 29.31 0.33 -2.39 16 8 C 0.03 0.35 6.54 -40.38 -0.26 0.09 16 9 C 0.12 1.84 6.57 -39.35 -0.26 1.58 16 10 O -0.26 -3.86 9.63 -48.91 -0.47 -4.33 16 11 C 0.01 0.11 7.14 37.27 0.27 0.38 16 12 C 0.02 0.15 7.14 37.27 0.27 0.41 16 13 O -0.30 -3.35 10.77 -35.39 -0.38 -3.73 16 14 C 0.13 2.44 3.56 -66.10 -0.24 2.20 16 15 H 0.10 1.92 7.01 -51.93 -0.36 1.56 16 16 C -0.16 -2.92 6.55 -24.47 -0.16 -3.08 16 17 C 0.16 3.69 4.54 -2.41 -0.01 3.67 16 18 N -0.60 -14.66 2.98 -169.93 -0.51 -15.17 16 19 C -0.23 -6.14 10.23 -15.06 -0.15 -6.30 16 20 H 0.08 2.00 7.85 -52.48 -0.41 1.59 16 21 C -0.01 -0.15 5.38 -17.43 -0.09 -0.24 16 22 N -0.92 -25.51 10.72 55.49 0.60 -24.92 16 23 Si 0.91 21.49 29.57 -169.99 -5.03 16.47 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.13 2.65 6.29 -3.06 -0.02 2.63 16 28 H 0.06 0.91 7.40 -51.92 -0.38 0.53 16 29 H 0.07 0.97 5.09 -25.67 -0.13 0.84 16 30 H 0.13 2.52 4.75 -51.93 -0.25 2.27 16 31 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.85 5.46 -51.93 -0.28 0.57 16 39 H 0.07 1.76 6.95 -51.93 -0.36 1.40 16 40 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -32.74 342.46 -8.59 -41.33 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.12 Total: 0.15 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.26 Total: 6.15 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.41 Total: -51.02 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -1.03 Total: -19.33 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.91 Total: 1.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.74 -8.59 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033554102.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.167 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds