Wall clock time and date at job start Tue Mar 31 2020 20:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99970 * 2 1 4 4 O 1.21778 * 119.99612 * 174.55972 * 3 2 1 5 5 C 1.41707 * 119.99949 * 354.55972 * 3 2 1 6 6 S 1.75656 * 125.10522 * 5.04793 * 5 3 2 7 7 C 1.75560 * 91.21228 * 179.97438 * 6 5 3 8 8 C 1.34194 * 110.68258 * 359.97438 * 7 6 5 9 9 C 1.37152 * 125.10063 * 184.74378 * 5 3 2 10 10 O 1.37657 * 124.48227 * 0.29783 * 9 5 3 11 11 C 1.43377 * 114.50087 * 163.25303 * 10 9 5 12 12 C 1.53225 * 109.13274 * 46.53035 * 11 10 9 13 13 O 1.38243 * 124.14874 * 180.21501 * 8 7 6 14 14 C 1.46495 * 119.99932 * 179.97438 * 2 1 3 15 15 H 1.08998 * 110.92169 * 188.98906 * 14 2 1 16 16 C 1.55155 * 111.00479 * 65.08786 * 14 2 1 17 17 C 1.54322 * 103.10349 * 277.51672 * 16 14 2 18 18 N 1.47018 * 107.27327 * 337.71657 * 17 16 14 19 19 C 1.36937 * 125.65373 * 178.90578 * 18 17 16 20 20 H 1.07993 * 120.00071 * 175.02533 * 19 18 17 21 21 C 1.38810 * 119.99453 * 355.01900 * 19 18 17 22 22 N 1.31620 * 120.00597 * 5.06204 * 21 19 18 23 23 Si 1.86808 * 119.99725 * 185.05307 * 21 19 18 24 24 H 1.48510 * 109.46559 * 95.00692 * 23 21 19 25 25 H 1.48501 * 109.47307 * 215.00424 * 23 21 19 26 26 H 1.48492 * 109.47179 * 335.00766 * 23 21 19 27 27 C 1.47430 * 108.69957 * 358.94030 * 18 17 16 28 28 H 1.08993 * 109.47410 * 184.84828 * 1 2 3 29 29 H 1.09004 * 109.47004 * 304.84721 * 1 2 3 30 30 H 1.09001 * 109.46763 * 64.84490 * 1 2 3 31 31 H 1.08007 * 124.65594 * 179.97438 * 7 6 5 32 32 H 1.09003 * 109.52740 * 166.42794 * 11 10 9 33 33 H 1.09006 * 109.52766 * 286.63725 * 11 10 9 34 34 H 1.09001 * 109.51880 * 57.63429 * 12 11 10 35 35 H 1.09000 * 109.52256 * 177.75177 * 12 11 10 36 36 H 1.08998 * 110.72597 * 159.06392 * 16 14 2 37 37 H 1.08999 * 110.72252 * 35.96513 * 16 14 2 38 38 H 1.09006 * 109.88493 * 97.13585 * 17 16 14 39 39 H 1.09000 * 109.88545 * 218.14233 * 17 16 14 40 40 H 0.96993 * 120.00041 * 179.97438 * 22 21 19 41 41 H 1.09000 * 110.36391 * 142.97019 * 27 18 17 42 42 H 1.08997 * 110.36632 * 265.29008 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3526 1.1695 0.1000 5 6 1.4351 2.3917 -0.1164 6 16 -0.3138 2.5531 -0.1413 7 6 -0.1878 4.2970 -0.2997 8 6 1.0984 4.6788 -0.3265 9 6 2.0173 3.6291 -0.2205 10 8 3.3755 3.8529 -0.2322 11 6 3.7611 5.1450 -0.7195 12 6 2.8834 6.2133 -0.0591 13 8 1.5159 5.9919 -0.4394 14 6 2.1975 -1.2687 0.0006 15 1 3.2630 -1.1029 0.1596 16 6 1.9471 -2.0560 -1.3128 17 6 0.6028 -2.7649 -1.0449 18 7 0.4349 -2.8458 0.4134 19 6 -0.6415 -3.3871 1.0641 20 1 -0.6350 -3.4719 2.1407 21 6 -1.7411 -3.8266 0.3399 22 7 -1.7097 -3.8157 -0.9759 23 14 -3.2655 -4.4339 1.2327 24 1 -4.2405 -3.3210 1.3605 25 1 -3.8805 -5.5448 0.4628 26 1 -2.8873 -4.9184 2.5845 27 6 1.6172 -2.2470 1.0593 28 1 -0.3634 -1.0239 0.0868 29 1 -0.3633 0.5872 0.8434 30 1 -0.3633 0.4368 -0.9302 31 1 -1.0299 4.9701 -0.3664 32 1 4.8069 5.3298 -0.4740 33 1 3.6276 5.1813 -1.8008 34 1 2.9834 6.1480 1.0244 35 1 3.1976 7.2015 -0.3949 36 1 2.7400 -2.7844 -1.4829 37 1 1.8622 -1.3756 -2.1601 38 1 -0.2135 -2.1886 -1.4806 39 1 0.6197 -3.7664 -1.4746 40 1 -2.4780 -4.1232 -1.4819 41 1 1.3242 -1.7032 1.9573 42 1 2.3477 -3.0183 1.3032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033554103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:09 Heat of formation + Delta-G solvation = -16.041315 kcal Electronic energy + Delta-G solvation = -27963.338523 eV Core-core repulsion = 24038.078821 eV Total energy + Delta-G solvation = -3925.259702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11099 -39.78629 -37.58651 -37.00390 -35.57831 -34.28186 -32.32099 -30.06850 -29.92344 -29.13874 -27.78315 -26.28512 -25.02345 -24.01918 -23.83673 -21.40887 -20.11098 -19.52676 -19.32757 -18.25706 -17.25632 -17.10380 -16.88189 -16.31747 -15.87901 -15.40891 -14.96120 -14.81107 -14.72955 -14.59466 -14.44600 -13.83148 -13.79883 -13.36678 -13.04974 -12.75221 -12.67098 -12.31901 -12.03402 -11.93295 -11.71058 -11.32765 -11.10147 -11.01280 -10.98326 -10.90254 -10.69760 -10.68907 -10.16845 -10.11142 -9.97536 -9.72874 -9.41934 -8.71919 -8.63309 -8.31187 -7.83395 -6.90601 -5.81332 -3.16411 0.42839 1.40357 1.68132 2.14512 3.10568 3.24130 3.34660 3.41482 3.42836 3.44600 3.47578 3.97232 4.37657 4.42231 4.60119 4.64755 5.04147 5.05991 5.21012 5.28769 5.34789 5.39252 5.40901 5.51301 5.59418 5.66214 5.85334 5.88206 5.93555 6.19565 6.34127 6.47904 6.50757 6.53828 6.62915 6.74509 6.95896 7.10583 7.48801 7.53932 7.74164 7.80268 8.14223 8.48662 9.11839 9.70828 10.36250 11.29266 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.003394 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.956787 B = 8248.958576 C = 9178.334752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.585 5.585 3 C 0.584 3.416 4 O -0.533 6.533 5 C -0.276 4.276 6 S 0.260 5.740 7 C -0.252 4.252 8 C 0.026 3.974 9 C 0.121 3.879 10 O -0.261 6.261 11 C 0.013 3.987 12 C 0.018 3.982 13 O -0.297 6.297 14 C 0.126 3.874 15 H 0.102 0.898 16 C -0.156 4.156 17 C 0.171 3.829 18 N -0.603 5.603 19 C -0.235 4.235 20 H 0.079 0.921 21 C -0.003 4.003 22 N -0.917 5.917 23 Si 0.910 3.090 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.124 3.876 28 H 0.160 0.840 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.173 0.827 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.254 0.746 41 H 0.047 0.953 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.775 18.239 -0.417 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.317 5.317 3 C 0.374 3.626 4 O -0.413 6.413 5 C -0.396 4.396 6 S 0.527 5.473 7 C -0.388 4.388 8 C -0.029 4.029 9 C 0.059 3.941 10 O -0.174 6.174 11 C -0.064 4.064 12 C -0.058 4.058 13 O -0.213 6.213 14 C 0.021 3.979 15 H 0.120 0.880 16 C -0.196 4.196 17 C 0.046 3.954 18 N -0.330 5.330 19 C -0.363 4.363 20 H 0.097 0.903 21 C -0.200 4.200 22 N -0.564 5.564 23 Si 0.740 3.260 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.206 1.206 27 C -0.002 4.002 28 H 0.177 0.823 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.190 0.810 32 H 0.141 0.859 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.139 0.861 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.027 17.167 -0.345 17.891 hybrid contribution 0.333 0.976 0.233 1.057 sum 5.361 18.142 -0.112 18.918 Atomic orbital electron populations 1.22546 0.79324 1.09400 0.99943 1.47540 1.07089 1.05202 1.71840 1.15650 0.86940 0.82306 0.77740 1.90827 1.12811 1.86880 1.50762 1.22621 0.98320 0.95803 1.22834 1.85302 0.98483 0.94202 1.69361 1.25894 0.98209 1.04714 1.09954 1.18223 0.92332 0.83966 1.08420 1.18805 0.84216 0.91301 0.99781 1.87186 1.16678 1.33387 1.80176 1.23687 1.00842 0.82308 0.99529 1.23623 0.80873 1.00592 1.00720 1.87102 1.28315 1.21597 1.84256 1.22335 0.96234 0.82100 0.97185 0.88009 1.23277 1.00888 0.98971 0.96442 1.21274 0.91202 0.98426 0.84461 1.44682 1.17718 1.68960 1.01626 1.19063 0.91994 1.34110 0.91134 0.90284 1.24814 0.98286 1.01303 0.95629 1.69974 1.30046 1.52335 1.04068 0.86133 0.83173 0.78106 0.78564 1.21470 1.21769 1.20643 1.21996 0.90417 0.93333 0.94475 0.82288 0.92316 0.92209 0.80957 0.85903 0.90486 0.90491 0.86133 0.91296 0.91867 0.92770 0.94045 0.93595 0.93500 0.94826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 7.57 59.85 0.45 1.03 16 2 N -0.59 -10.73 2.91 -174.56 -0.51 -11.24 16 3 C 0.58 11.02 7.46 -14.93 -0.11 10.91 16 4 O -0.53 -11.40 15.27 -11.77 -0.18 -11.58 16 5 C -0.28 -4.52 6.15 -38.65 -0.24 -4.76 16 6 S 0.26 3.38 17.46 -107.50 -1.88 1.50 16 7 C -0.25 -3.02 11.17 29.31 0.33 -2.69 16 8 C 0.03 0.35 6.54 -40.38 -0.26 0.09 16 9 C 0.12 1.88 6.57 -39.35 -0.26 1.62 16 10 O -0.26 -4.00 9.61 -49.07 -0.47 -4.47 16 11 C 0.01 0.12 7.13 37.27 0.27 0.39 16 12 C 0.02 0.16 7.15 37.27 0.27 0.42 16 13 O -0.30 -3.56 10.78 -35.39 -0.38 -3.94 16 14 C 0.13 2.35 3.68 -65.53 -0.24 2.11 16 15 H 0.10 1.89 7.04 -51.93 -0.37 1.53 16 16 C -0.16 -2.94 6.53 -24.90 -0.16 -3.10 16 17 C 0.17 3.86 4.32 -3.07 -0.01 3.85 16 18 N -0.60 -14.11 1.89 -169.77 -0.32 -14.43 16 19 C -0.24 -6.03 9.86 -15.06 -0.15 -6.18 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C 0.00 -0.09 5.48 -17.43 -0.10 -0.18 16 22 N -0.92 -24.98 10.34 55.49 0.57 -24.41 16 23 Si 0.91 20.83 29.56 -169.99 -5.02 15.81 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.12 2.51 6.42 -2.27 -0.01 2.49 16 28 H 0.16 3.35 3.60 -51.93 -0.19 3.16 16 29 H 0.06 0.94 6.20 -36.39 -0.23 0.71 16 30 H 0.06 0.97 6.48 -41.64 -0.27 0.70 16 31 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16 32 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.05 1.32 6.30 -51.93 -0.33 0.99 16 39 H 0.04 1.05 7.65 -51.93 -0.40 0.65 16 40 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -31.43 341.80 -8.40 -39.83 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.12 Total: 1.79 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.23 Total: 5.99 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.26 Total: -50.08 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -1.03 Total: -20.00 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.88 Total: 1.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.43 -8.40 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033554103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.786 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds