Wall clock time and date at job start Tue Mar 31 2020 20:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99970 * 2 1 4 4 O 1.21778 * 119.99612 * 174.55972 * 3 2 1 5 5 C 1.41707 * 119.99949 * 354.55972 * 3 2 1 6 6 S 1.75656 * 125.10522 * 5.04793 * 5 3 2 7 7 C 1.75560 * 91.21228 * 179.97438 * 6 5 3 8 8 C 1.34194 * 110.68258 * 359.97438 * 7 6 5 9 9 C 1.37152 * 125.10063 * 184.74378 * 5 3 2 10 10 O 1.37657 * 124.48227 * 0.29783 * 9 5 3 11 11 C 1.43377 * 114.50087 * 163.25303 * 10 9 5 12 12 C 1.53225 * 109.13274 * 46.53035 * 11 10 9 13 13 O 1.38243 * 124.14874 * 180.21501 * 8 7 6 14 14 C 1.46495 * 119.99932 * 179.97438 * 2 1 3 15 15 H 1.08998 * 110.92169 * 188.98906 * 14 2 1 16 16 C 1.55155 * 111.00479 * 65.08786 * 14 2 1 17 17 C 1.54322 * 103.10349 * 277.51672 * 16 14 2 18 18 N 1.47018 * 107.27327 * 337.71657 * 17 16 14 19 19 C 1.36937 * 125.65373 * 178.90578 * 18 17 16 20 20 H 1.07993 * 120.00071 * 175.02533 * 19 18 17 21 21 C 1.38810 * 119.99453 * 355.01900 * 19 18 17 22 22 N 1.31620 * 120.00597 * 5.06204 * 21 19 18 23 23 Si 1.86808 * 119.99725 * 185.05307 * 21 19 18 24 24 H 1.48510 * 109.46559 * 95.00692 * 23 21 19 25 25 H 1.48501 * 109.47307 * 215.00424 * 23 21 19 26 26 H 1.48492 * 109.47179 * 335.00766 * 23 21 19 27 27 C 1.47430 * 108.69957 * 358.94030 * 18 17 16 28 28 H 1.08993 * 109.47410 * 184.84828 * 1 2 3 29 29 H 1.09004 * 109.47004 * 304.84721 * 1 2 3 30 30 H 1.09001 * 109.46763 * 64.84490 * 1 2 3 31 31 H 1.08007 * 124.65594 * 179.97438 * 7 6 5 32 32 H 1.09003 * 109.52740 * 166.42794 * 11 10 9 33 33 H 1.09006 * 109.52766 * 286.63725 * 11 10 9 34 34 H 1.09001 * 109.51880 * 57.63429 * 12 11 10 35 35 H 1.09000 * 109.52256 * 177.75177 * 12 11 10 36 36 H 1.08998 * 110.72597 * 159.06392 * 16 14 2 37 37 H 1.08999 * 110.72252 * 35.96513 * 16 14 2 38 38 H 1.09006 * 109.88493 * 97.13585 * 17 16 14 39 39 H 1.09000 * 109.88545 * 218.14233 * 17 16 14 40 40 H 0.96993 * 120.00041 * 179.97438 * 22 21 19 41 41 H 1.09000 * 110.36391 * 142.97019 * 27 18 17 42 42 H 1.08997 * 110.36632 * 265.29008 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3526 1.1695 0.1000 5 6 1.4351 2.3917 -0.1164 6 16 -0.3138 2.5531 -0.1413 7 6 -0.1878 4.2970 -0.2997 8 6 1.0984 4.6788 -0.3265 9 6 2.0173 3.6291 -0.2205 10 8 3.3755 3.8529 -0.2322 11 6 3.7611 5.1450 -0.7195 12 6 2.8834 6.2133 -0.0591 13 8 1.5159 5.9919 -0.4394 14 6 2.1975 -1.2687 0.0006 15 1 3.2630 -1.1029 0.1596 16 6 1.9471 -2.0560 -1.3128 17 6 0.6028 -2.7649 -1.0449 18 7 0.4349 -2.8458 0.4134 19 6 -0.6415 -3.3871 1.0641 20 1 -0.6350 -3.4719 2.1407 21 6 -1.7411 -3.8266 0.3399 22 7 -1.7097 -3.8157 -0.9759 23 14 -3.2655 -4.4339 1.2327 24 1 -4.2405 -3.3210 1.3605 25 1 -3.8805 -5.5448 0.4628 26 1 -2.8873 -4.9184 2.5845 27 6 1.6172 -2.2470 1.0593 28 1 -0.3634 -1.0239 0.0868 29 1 -0.3633 0.5872 0.8434 30 1 -0.3633 0.4368 -0.9302 31 1 -1.0299 4.9701 -0.3664 32 1 4.8069 5.3298 -0.4740 33 1 3.6276 5.1813 -1.8008 34 1 2.9834 6.1480 1.0244 35 1 3.1976 7.2015 -0.3949 36 1 2.7400 -2.7844 -1.4829 37 1 1.8622 -1.3756 -2.1601 38 1 -0.2135 -2.1886 -1.4806 39 1 0.6197 -3.7664 -1.4746 40 1 -2.4780 -4.1232 -1.4819 41 1 1.3242 -1.7032 1.9573 42 1 2.3477 -3.0183 1.3032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033554103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:09 Heat of formation + Delta-G solvation = -35.434303 kcal Electronic energy + Delta-G solvation = -27964.179466 eV Core-core repulsion = 24038.078821 eV Total energy + Delta-G solvation = -3926.100645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.10544 -41.21022 -39.12638 -38.01213 -36.60728 -35.88847 -34.12078 -31.51741 -30.79832 -30.58732 -29.36001 -27.78037 -26.54634 -25.51410 -24.68237 -22.67765 -21.93026 -20.83101 -20.34898 -19.48723 -18.87362 -18.39109 -18.06292 -17.47511 -17.12950 -16.65993 -16.57945 -16.08671 -15.85719 -15.79387 -15.56066 -15.37427 -15.17722 -14.51188 -14.37278 -14.06822 -13.84408 -13.78632 -13.69945 -13.41083 -13.28553 -12.80960 -12.77535 -12.40120 -12.21639 -12.06283 -11.98463 -11.96300 -11.82798 -11.79681 -11.55058 -11.47760 -10.91978 -10.65781 -9.89392 -9.56483 -8.95010 -8.79229 -7.80447 -5.16483 -0.68284 0.33705 0.68377 1.09280 1.52891 1.54044 1.62116 1.92903 2.03428 2.26287 2.51127 2.53604 3.07747 3.39107 3.52440 3.63506 3.79738 3.88768 3.93567 4.00983 4.06906 4.19519 4.25730 4.34250 4.43502 4.47361 4.54003 4.60453 4.61433 4.72528 4.88058 4.91829 4.96044 5.04338 5.20290 5.52485 5.56574 5.64884 5.69260 5.80805 6.01548 6.21306 6.36796 7.06046 7.13956 7.78051 8.43114 9.28937 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.003394 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.956787 B = 8248.958576 C = 9178.334752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.588 5.588 3 C 0.585 3.415 4 O -0.568 6.568 5 C -0.322 4.322 6 S 0.282 5.718 7 C -0.228 4.228 8 C 0.012 3.988 9 C 0.124 3.876 10 O -0.293 6.293 11 C 0.003 3.997 12 C 0.016 3.984 13 O -0.304 6.304 14 C 0.134 3.866 15 H 0.107 0.893 16 C -0.142 4.142 17 C 0.185 3.815 18 N -0.613 5.613 19 C -0.241 4.241 20 H 0.081 0.919 21 C -0.051 4.051 22 N -0.942 5.942 23 Si 0.970 3.030 24 H -0.283 1.283 25 H -0.300 1.300 26 H -0.274 1.274 27 C 0.127 3.873 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.204 0.796 32 H 0.152 0.848 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.161 0.839 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.007 0.993 40 H 0.248 0.752 41 H 0.046 0.954 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.596 20.603 0.025 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.319 5.319 3 C 0.377 3.623 4 O -0.451 6.451 5 C -0.441 4.441 6 S 0.548 5.452 7 C -0.364 4.364 8 C -0.043 4.043 9 C 0.061 3.939 10 O -0.207 6.207 11 C -0.072 4.072 12 C -0.059 4.059 13 O -0.220 6.220 14 C 0.029 3.971 15 H 0.125 0.875 16 C -0.182 4.182 17 C 0.060 3.940 18 N -0.340 5.340 19 C -0.369 4.369 20 H 0.099 0.901 21 C -0.245 4.245 22 N -0.591 5.591 23 Si 0.799 3.201 24 H -0.209 1.209 25 H -0.227 1.227 26 H -0.199 1.199 27 C 0.001 3.999 28 H 0.146 0.854 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.221 0.779 32 H 0.170 0.830 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.179 0.821 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.025 0.975 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.862 19.542 0.117 20.138 hybrid contribution 0.459 0.388 0.104 0.611 sum 5.321 19.931 0.220 20.630 Atomic orbital electron populations 1.22393 0.78854 1.07845 1.01318 1.47564 1.07319 1.05064 1.71943 1.15914 0.86654 0.82942 0.76797 1.90787 1.14236 1.87436 1.52591 1.22537 1.00320 0.95185 1.26096 1.85041 0.95952 0.95164 1.69028 1.26203 0.98775 1.04215 1.07216 1.18260 0.92376 0.84372 1.09306 1.19112 0.84837 0.91653 0.98320 1.87134 1.16803 1.36454 1.80271 1.24085 1.02700 0.80539 0.99859 1.23924 0.79041 1.02011 1.00918 1.87092 1.30144 1.20338 1.84409 1.22210 0.96412 0.82135 0.96317 0.87541 1.23150 0.99110 0.99072 0.96823 1.20983 0.92568 0.96444 0.83967 1.44802 1.18197 1.68944 1.02100 1.19332 0.92747 1.33455 0.91415 0.90123 1.25486 1.00693 1.02096 0.96259 1.70154 1.30285 1.53433 1.05195 0.85190 0.80047 0.77242 0.77595 1.20945 1.22696 1.19888 1.22056 0.89505 0.93672 0.94691 0.85379 0.90855 0.91065 0.77890 0.83049 0.90087 0.90303 0.82114 0.89661 0.91109 0.94901 0.97499 0.94272 0.93532 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 7.57 127.77 0.97 2.40 16 2 N -0.59 -21.55 2.91 -824.36 -2.40 -23.95 16 3 C 0.59 22.14 7.46 85.10 0.64 22.78 16 4 O -0.57 -24.58 15.27 11.54 0.18 -24.40 16 5 C -0.32 -10.40 6.15 22.87 0.14 -10.26 16 6 S 0.28 6.89 17.46 -56.49 -0.99 5.91 16 7 C -0.23 -4.84 11.17 66.90 0.75 -4.09 16 8 C 0.01 0.30 6.54 21.75 0.14 0.44 16 9 C 0.12 3.74 6.57 22.42 0.15 3.89 16 10 O -0.29 -8.78 9.61 -90.65 -0.87 -9.65 16 11 C 0.00 0.06 7.13 72.06 0.51 0.57 16 12 C 0.02 0.23 7.15 72.06 0.52 0.75 16 13 O -0.30 -6.44 10.78 -113.00 -1.22 -7.66 16 14 C 0.13 4.98 3.68 46.55 0.17 5.15 16 15 H 0.11 3.93 7.04 -2.39 -0.02 3.91 16 16 C -0.14 -5.33 6.53 31.78 0.21 -5.13 16 17 C 0.18 8.57 4.32 86.73 0.37 8.95 16 18 N -0.61 -29.10 1.89 -691.03 -1.30 -30.41 16 19 C -0.24 -12.47 9.86 84.03 0.83 -11.64 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.05 -2.70 5.48 84.86 0.47 -2.24 16 22 N -0.94 -52.53 10.34 21.65 0.22 -52.31 16 23 Si 0.97 43.06 29.56 68.60 2.03 45.09 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 C 0.13 5.09 6.42 87.02 0.56 5.65 16 28 H 0.13 5.46 3.60 -2.39 -0.01 5.45 16 29 H 0.07 2.30 6.20 -12.27 -0.08 2.23 16 30 H 0.07 2.29 6.48 -8.93 -0.06 2.23 16 31 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.03 1.66 6.30 -2.38 -0.02 1.64 16 39 H 0.01 0.36 7.65 -2.39 -0.02 0.34 16 40 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -69.24 341.80 3.02 -66.22 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.96 Total: 13.94 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 6.42 Total: 17.21 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -3.48 Total: -106.67 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -1.91 Total: -41.71 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -0.99 Total: 5.91 kcal Total: -69.24 3.02 -66.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033554103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.787 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds