Wall clock time and date at job start Tue Mar 31 2020 20:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 119.99833 * 2 1 4 4 H 1.48502 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46930 * 299.99511 * 3 2 1 6 6 H 1.48500 * 109.47313 * 59.99977 * 3 2 1 7 7 C 1.38815 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00081 * 169.20696 * 7 2 1 9 9 N 1.36941 * 119.99620 * 349.20559 * 7 2 1 10 10 C 1.47221 * 121.03374 * 328.44438 * 9 7 2 11 11 C 1.53293 * 108.40195 * 230.57690 * 10 9 7 12 12 O 1.42966 * 109.22402 * 307.69293 * 11 10 9 13 13 C 1.42952 * 114.16543 * 62.58109 * 12 11 10 14 14 C 1.47152 * 120.97921 * 148.50623 * 9 7 2 15 15 H 1.08998 * 109.68167 * 249.16545 * 14 9 7 16 16 C 1.53000 * 109.68050 * 9.67302 * 14 9 7 17 17 N 1.46502 * 109.47712 * 298.66011 * 16 14 9 18 18 C 1.34771 * 120.00226 * 180.02562 * 17 16 14 19 19 O 1.21619 * 120.00246 * 359.97438 * 18 17 16 20 20 C 1.47169 * 119.99827 * 179.97438 * 18 17 16 21 21 S 1.77337 * 128.47698 * 359.67631 * 20 18 17 22 22 N 1.56637 * 95.28212 * 179.89041 * 21 20 18 23 23 N 1.27338 * 109.74254 * 0.38085 * 22 21 20 24 24 C 1.31236 * 120.03588 * 359.69708 * 23 22 21 25 25 C 1.50701 * 124.05559 * 179.97438 * 24 23 22 26 26 C 1.53005 * 117.50033 * 8.77228 * 25 24 23 27 27 C 1.53005 * 117.49911 * 300.11102 * 25 24 23 28 28 H 0.97000 * 120.00600 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.67738 * 110.84732 * 10 9 7 30 30 H 1.08999 * 109.67038 * 350.30012 * 10 9 7 31 31 H 1.09001 * 109.51186 * 187.77141 * 11 10 9 32 32 H 1.08997 * 109.51820 * 67.61704 * 11 10 9 33 33 H 1.09003 * 109.51316 * 177.49954 * 13 12 11 34 34 H 1.09002 * 109.55711 * 57.37145 * 13 12 11 35 35 H 1.09004 * 109.47362 * 58.66175 * 16 14 9 36 36 H 1.09003 * 109.46926 * 178.65798 * 16 14 9 37 37 H 0.97004 * 119.99415 * 359.97438 * 17 16 14 38 38 H 1.09001 * 115.55127 * 154.44386 * 25 24 23 39 39 H 1.09000 * 117.49101 * 359.97438 * 26 25 24 40 40 H 1.08996 * 117.50483 * 145.01710 * 26 25 24 41 41 H 1.08994 * 117.49634 * 214.97452 * 27 25 24 42 42 H 1.08996 * 117.49526 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0758 -1.2104 -0.1746 9 7 1.3437 -2.3775 0.2232 10 6 0.1587 -2.4245 1.0954 11 6 0.3518 -3.5540 2.1137 12 8 0.6783 -4.7613 1.4212 13 6 1.9051 -4.7029 0.6896 14 6 1.7915 -3.6323 -0.4015 15 1 1.0666 -3.9480 -1.1517 16 6 3.1561 -3.4214 -1.0606 17 7 3.0408 -2.4029 -2.1074 18 6 4.1243 -2.0511 -2.8276 19 8 5.1979 -2.5788 -2.6083 20 6 4.0083 -1.0283 -3.8794 21 16 2.5677 -0.1285 -4.3894 22 7 3.3011 0.7024 -5.4963 23 7 4.5304 0.3730 -5.5378 24 6 4.9944 -0.5385 -4.7154 25 6 6.4297 -0.9967 -4.6863 26 6 7.4381 -0.2154 -5.5311 27 6 6.9995 -1.6168 -5.9637 28 1 -0.4851 0.8400 -0.0004 29 1 -0.7308 -2.6187 0.4961 30 1 0.0496 -1.4741 1.6178 31 1 -0.5694 -3.6962 2.6788 32 1 1.1617 -3.2950 2.7956 33 1 2.1015 -5.6716 0.2301 34 1 2.7213 -4.4485 1.3658 35 1 3.8749 -3.0917 -0.3105 36 1 3.4953 -4.3588 -1.5016 37 1 2.1844 -1.9823 -2.2825 38 1 6.7756 -1.3989 -3.7340 39 1 7.0631 0.6298 -6.1084 40 1 8.4474 -0.1038 -5.1350 41 1 7.7204 -2.4265 -5.8519 42 1 6.3362 -1.6928 -6.8253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050965349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:13 Heat of formation + Delta-G solvation = 50.766309 kcal Electronic energy + Delta-G solvation = -27851.663480 eV Core-core repulsion = 23961.593525 eV Total energy + Delta-G solvation = -3890.069955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.94569 -39.38485 -38.36438 -36.97854 -35.46697 -33.75715 -32.10136 -31.42386 -30.53017 -27.75714 -27.20138 -25.58650 -23.63836 -23.52661 -22.40583 -22.15560 -21.43696 -20.13886 -19.68316 -17.99139 -17.53539 -16.51212 -16.16595 -15.99169 -15.84257 -15.53326 -15.01906 -14.72049 -14.46358 -14.43198 -14.05469 -13.84601 -13.72420 -13.12455 -12.97611 -12.76009 -12.13772 -12.03144 -11.85865 -11.63494 -11.58316 -11.18237 -11.17367 -11.00983 -10.86739 -10.51564 -10.45302 -10.34434 -10.18115 -10.16651 -9.81109 -9.72292 -9.67679 -9.35690 -9.09412 -8.82815 -8.51451 -6.84916 -6.03454 -3.53411 -0.12691 0.96348 1.60934 1.97734 3.15328 3.21384 3.27837 3.30075 3.38812 3.79135 4.00738 4.22078 4.43188 4.44595 4.86894 4.96130 4.99954 5.08062 5.12195 5.15175 5.44181 5.58598 5.61507 5.64652 5.74322 5.83024 5.90841 5.95051 6.06351 6.08241 6.11309 6.19147 6.24400 6.42659 6.61257 6.78874 6.97558 7.39856 7.57757 7.70407 7.78096 7.87328 8.16663 8.41816 8.93092 9.53120 10.12892 11.02645 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.004404 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.897244 B = 6356.672198 C = 7565.531338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.016 3.984 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.073 0.927 9 N -0.592 5.592 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.391 6.391 13 C 0.057 3.943 14 C 0.123 3.877 15 H 0.044 0.956 16 C 0.136 3.864 17 N -0.683 5.683 18 C 0.595 3.405 19 O -0.534 6.534 20 C -0.277 4.277 21 S 0.443 5.557 22 N -0.269 5.269 23 N -0.254 5.254 24 C 0.119 3.881 25 C -0.081 4.081 26 C -0.164 4.164 27 C -0.157 4.157 28 H 0.257 0.743 29 H 0.031 0.969 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.414 0.586 38 H 0.145 0.855 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.096 -4.701 -6.041 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.185 4.185 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.090 0.910 9 N -0.318 5.318 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.310 6.310 13 C -0.022 4.022 14 C 0.016 3.984 15 H 0.061 0.939 16 C 0.012 3.988 17 N -0.334 5.334 18 C 0.378 3.622 19 O -0.414 6.414 20 C -0.417 4.417 21 S 0.580 5.420 22 N -0.249 5.249 23 N -0.120 5.120 24 C -0.028 4.028 25 C -0.103 4.103 26 C -0.201 4.201 27 C -0.194 4.194 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.253 0.747 38 H 0.163 0.837 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.250 -3.865 -6.741 9.378 hybrid contribution 1.061 0.844 0.563 1.468 sum 6.311 -3.021 -6.178 9.334 Atomic orbital electron populations 1.69960 1.05062 1.25767 1.52830 1.25097 0.95237 0.97968 1.00172 0.86557 0.79888 0.84570 0.78123 1.19981 1.21075 1.20944 1.19244 0.91297 0.83338 1.45025 0.90974 1.44105 1.32555 1.02908 1.52188 1.21430 0.88917 0.96811 0.90987 1.23354 0.99242 0.86524 0.95205 1.87811 1.40610 1.36181 1.66393 1.22846 0.86891 0.98600 0.93912 1.21457 0.93513 0.89502 0.93896 0.93889 1.21285 0.98141 0.89932 0.89437 1.45916 1.11719 1.40964 1.34839 1.16383 0.84904 0.80812 0.80102 1.90743 1.27171 1.54686 1.68767 1.27794 0.98166 1.08564 1.07207 1.83068 1.15937 1.21296 1.21705 1.78746 1.04537 1.22901 1.18740 1.70476 1.04440 1.14507 1.22547 1.21849 0.97357 0.92616 0.91021 1.20601 0.85498 1.05431 0.98757 1.23060 0.98651 0.95664 1.02738 1.22987 1.03003 0.96825 0.96626 0.93247 0.95097 0.88997 0.90179 0.94069 0.89814 0.93406 0.90829 0.91618 0.74734 0.83741 0.87686 0.88083 0.87837 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.73 11.17 55.49 0.62 -22.11 16 2 C 0.02 0.38 5.06 -17.43 -0.09 0.30 16 3 Si 0.88 20.00 29.57 -169.99 -5.03 14.97 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.04 7.09 -15.06 -0.11 -6.14 16 8 H 0.07 1.72 5.83 -52.49 -0.31 1.41 16 9 N -0.59 -12.71 3.03 -164.25 -0.50 -13.21 16 10 C 0.14 3.07 5.38 -3.50 -0.02 3.05 16 11 C 0.03 0.63 6.99 37.31 0.26 0.89 16 12 O -0.39 -7.14 10.74 -35.23 -0.38 -7.52 16 13 C 0.06 0.92 6.29 37.31 0.23 1.16 16 14 C 0.12 2.21 3.20 -67.42 -0.22 2.00 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.14 2.28 4.44 -4.04 -0.02 2.26 16 17 N -0.68 -11.98 3.81 -61.47 -0.23 -12.21 16 18 C 0.60 10.54 7.80 -12.64 -0.10 10.44 16 19 O -0.53 -10.15 14.96 5.26 0.08 -10.07 16 20 C -0.28 -4.61 6.81 -35.95 -0.24 -4.86 16 21 S 0.44 6.95 23.05 -107.50 -2.48 4.47 16 22 N -0.27 -4.46 12.51 60.35 0.75 -3.71 16 23 N -0.25 -4.20 10.95 33.42 0.37 -3.84 16 24 C 0.12 1.91 6.59 -82.84 -0.55 1.36 16 25 C -0.08 -1.12 5.63 -91.77 -0.52 -1.64 16 26 C -0.16 -1.83 10.11 -26.69 -0.27 -2.10 16 27 C -0.16 -1.74 10.24 -26.69 -0.27 -2.01 16 28 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 2.17 6.36 -51.93 -0.33 1.84 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.33 7.52 -51.93 -0.39 0.94 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.41 7.56 6.81 -40.82 -0.28 7.28 16 38 H 0.14 2.12 6.64 -51.93 -0.34 1.78 16 39 H 0.10 1.24 7.80 -51.93 -0.40 0.83 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -27.24 357.42 -8.73 -35.96 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.42 Total: 7.17 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.90 Total: 4.70 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 1.01 Total: -55.08 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.30 Total: -17.59 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Atomic # 16 Polarization: 6.95 SS G_CDS: -2.48 Total: 4.47 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.24 -8.73 -35.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050965349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.729 kcal (2) G-P(sol) polarization free energy of solvation -27.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds