Wall clock time and date at job start Tue Mar 31 2020 20:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86809 * 120.00042 * 2 1 4 4 H 1.48495 * 109.46876 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.46973 * 299.99855 * 3 2 1 6 6 H 1.48497 * 109.46903 * 60.00243 * 3 2 1 7 7 C 1.38811 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00275 * 190.74317 * 7 2 1 9 9 N 1.36937 * 119.99837 * 10.74208 * 7 2 1 10 10 C 1.47158 * 120.98120 * 31.18547 * 9 7 2 11 11 C 1.53299 * 108.38411 * 129.48742 * 10 9 7 12 12 O 1.42960 * 109.22139 * 52.30160 * 11 10 9 13 13 C 1.42968 * 114.16835 * 297.41823 * 12 11 10 14 14 C 1.47156 * 120.98327 * 211.20989 * 9 7 2 15 15 H 1.08994 * 109.68137 * 110.75253 * 14 9 7 16 16 C 1.52995 * 109.68097 * 350.23377 * 14 9 7 17 17 N 1.46506 * 109.46931 * 60.58428 * 16 14 9 18 18 C 1.34780 * 119.99623 * 179.97438 * 17 16 14 19 19 O 1.21623 * 120.00157 * 0.02562 * 18 17 16 20 20 C 1.47176 * 119.99710 * 180.27172 * 18 17 16 21 21 S 1.77336 * 128.47346 * 359.40600 * 20 18 17 22 22 N 1.56643 * 95.28086 * 179.88549 * 21 20 18 23 23 N 1.27339 * 109.73991 * 0.38483 * 22 21 20 24 24 C 1.31247 * 120.03739 * 359.69277 * 23 22 21 25 25 C 1.50697 * 124.05404 * 179.97438 * 24 23 22 26 26 C 1.53001 * 117.49944 * 8.66274 * 25 24 23 27 27 C 1.53002 * 117.49631 * 300.03780 * 25 24 23 28 28 H 0.97006 * 120.00405 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.67912 * 249.21049 * 10 9 7 30 30 H 1.08996 * 109.67963 * 9.72478 * 10 9 7 31 31 H 1.08994 * 109.51089 * 172.22588 * 11 10 9 32 32 H 1.08996 * 109.50911 * 292.32708 * 11 10 9 33 33 H 1.08997 * 109.50831 * 302.65975 * 13 12 11 34 34 H 1.08998 * 109.51321 * 182.50452 * 13 12 11 35 35 H 1.08997 * 109.47409 * 300.58601 * 16 14 9 36 36 H 1.08994 * 109.47456 * 180.58142 * 16 14 9 37 37 H 0.96997 * 119.99971 * 359.97438 * 17 16 14 38 38 H 1.08996 * 115.54896 * 154.37094 * 25 24 23 39 39 H 1.09001 * 117.50137 * 0.02562 * 26 25 24 40 40 H 1.08999 * 117.49858 * 145.02343 * 26 25 24 41 41 H 1.08996 * 117.50019 * 214.97604 * 27 25 24 42 42 H 1.08995 * 117.49951 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0760 -1.2104 0.1738 9 7 1.3435 -2.3775 -0.2221 10 6 0.1537 -2.4222 -1.0868 11 6 0.3406 -3.5495 -2.1087 12 8 0.6712 -4.7583 -1.4207 13 6 1.9025 -4.7015 -0.6964 14 6 1.7955 -3.6333 0.3979 15 1 1.0753 -3.9503 1.1520 16 6 3.1642 -3.4232 1.0485 17 7 3.0592 -2.3934 2.0852 18 6 4.1480 -2.0402 2.7968 19 8 5.2176 -2.5761 2.5781 20 6 4.0412 -1.0098 3.8423 21 16 2.6112 -0.0863 4.3393 22 7 3.3493 0.7358 5.4497 23 7 4.5765 0.3985 5.4905 24 6 5.0325 -0.5213 4.6729 25 6 6.4650 -0.9884 4.6426 26 6 7.3917 -0.4979 5.7569 27 6 7.5419 0.0548 4.3380 28 1 -0.4851 0.8401 -0.0004 29 1 -0.7321 -2.6176 -0.4825 30 1 0.0412 -1.4703 -1.6058 31 1 -0.5839 -3.6904 -2.6685 32 1 1.1459 -3.2885 -2.7953 33 1 2.7140 -4.4452 -1.3774 34 1 2.1016 -5.6712 -0.2402 35 1 3.8813 -3.1052 0.2918 36 1 3.5003 -4.3578 1.4976 37 1 2.2062 -1.9657 2.2593 38 1 6.6221 -1.9989 4.2653 39 1 6.9652 0.1624 6.5120 40 1 8.1586 -1.1857 6.1129 41 1 8.4077 -0.2694 3.7608 42 1 7.2143 1.0790 4.1599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050965352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:16 Heat of formation + Delta-G solvation = 51.328642 kcal Electronic energy + Delta-G solvation = -27890.523026 eV Core-core repulsion = 24000.477455 eV Total energy + Delta-G solvation = -3890.045570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.94072 -39.38751 -38.36324 -36.97225 -35.47427 -33.75588 -32.10246 -31.42458 -30.52751 -27.75482 -27.20771 -25.58235 -23.63770 -23.52712 -22.38465 -22.15471 -21.43894 -20.13158 -19.68483 -17.98880 -17.53829 -16.49957 -16.14672 -16.07491 -15.71137 -15.61373 -15.00857 -14.72105 -14.44967 -14.43036 -14.05214 -13.84507 -13.72115 -13.12847 -12.96866 -12.77062 -12.12135 -12.06178 -11.83978 -11.63900 -11.56407 -11.18048 -11.16365 -11.01250 -10.86768 -10.51551 -10.44664 -10.34736 -10.18160 -10.16689 -9.80963 -9.72332 -9.67707 -9.34745 -9.09679 -8.83082 -8.50581 -6.85644 -6.03823 -3.53576 -0.12346 0.96763 1.61349 1.98081 3.14781 3.21870 3.27203 3.29379 3.38823 3.80357 4.00520 4.21544 4.44524 4.44900 4.87985 4.96846 5.00072 5.08405 5.12751 5.14851 5.44171 5.61366 5.61651 5.65015 5.74297 5.84027 5.90577 5.95029 6.06368 6.10302 6.11509 6.18565 6.24530 6.42716 6.61322 6.78940 6.97884 7.40417 7.57176 7.70780 7.78213 7.87774 8.16224 8.42234 8.92805 9.52805 10.12294 11.02092 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.004417 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.076410 B = 6337.468055 C = 7406.579632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.016 3.984 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.260 4.260 8 H 0.073 0.927 9 N -0.592 5.592 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.391 6.391 13 C 0.057 3.943 14 C 0.123 3.877 15 H 0.044 0.956 16 C 0.136 3.864 17 N -0.683 5.683 18 C 0.595 3.405 19 O -0.535 6.535 20 C -0.277 4.277 21 S 0.443 5.557 22 N -0.269 5.269 23 N -0.255 5.255 24 C 0.119 3.881 25 C -0.081 4.081 26 C -0.163 4.163 27 C -0.157 4.157 28 H 0.257 0.743 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.415 0.585 38 H 0.145 0.855 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.271 -4.242 5.569 9.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.185 4.185 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.389 4.389 8 H 0.091 0.909 9 N -0.318 5.318 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.310 6.310 13 C -0.022 4.022 14 C 0.016 3.984 15 H 0.061 0.939 16 C 0.012 3.988 17 N -0.335 5.335 18 C 0.378 3.622 19 O -0.414 6.414 20 C -0.418 4.418 21 S 0.580 5.420 22 N -0.249 5.249 23 N -0.120 5.120 24 C -0.028 4.028 25 C -0.103 4.103 26 C -0.201 4.201 27 C -0.195 4.195 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.253 0.747 38 H 0.162 0.838 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.432 -3.395 6.265 8.960 hybrid contribution 1.052 0.823 -0.557 1.447 sum 6.483 -2.572 5.708 9.013 Atomic orbital electron populations 1.69959 1.05055 1.25763 1.52840 1.25088 0.95236 0.97946 1.00218 0.86567 0.79904 0.84602 0.78157 1.19965 1.20920 1.21052 1.19267 0.91336 0.83350 1.44972 0.90908 1.44097 1.32094 1.02848 1.52740 1.21429 0.88806 0.96889 0.91045 1.23351 0.99213 0.86491 0.95271 1.87812 1.40224 1.36097 1.66866 1.22849 0.86801 0.98605 0.93982 1.21458 0.93470 0.89493 0.93951 0.93869 1.21282 0.98113 0.89708 0.89700 1.45948 1.11729 1.40208 1.35570 1.16392 0.84856 0.80886 0.80097 1.90743 1.27601 1.54811 1.68250 1.27792 0.98355 1.08360 1.07252 1.83089 1.16379 1.20791 1.21723 1.78746 1.04469 1.23199 1.18527 1.70480 1.04616 1.14390 1.22493 1.21854 0.97360 0.92476 0.91159 1.20586 0.82797 1.00821 1.06059 1.23044 1.01255 1.03624 0.92154 1.22989 0.99350 0.98277 0.98892 0.93235 0.95124 0.88907 0.90191 0.94073 0.93399 0.89807 0.90856 0.91606 0.74659 0.83752 0.87707 0.88111 0.87782 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.69 11.13 55.49 0.62 -22.08 16 2 C 0.02 0.38 5.06 -17.44 -0.09 0.29 16 3 Si 0.88 19.94 29.57 -169.99 -5.03 14.92 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.26 -6.03 7.05 -15.06 -0.11 -6.14 16 8 H 0.07 1.73 5.81 -52.49 -0.30 1.43 16 9 N -0.59 -12.71 3.03 -164.30 -0.50 -13.21 16 10 C 0.14 3.07 5.38 -3.53 -0.02 3.05 16 11 C 0.03 0.63 6.99 37.31 0.26 0.89 16 12 O -0.39 -7.14 10.74 -35.23 -0.38 -7.52 16 13 C 0.06 0.92 6.29 37.31 0.23 1.16 16 14 C 0.12 2.21 3.21 -67.42 -0.22 2.00 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.14 2.28 4.45 -4.04 -0.02 2.26 16 17 N -0.68 -12.00 3.77 -61.47 -0.23 -12.23 16 18 C 0.59 10.55 7.80 -12.63 -0.10 10.46 16 19 O -0.53 -10.16 14.97 5.26 0.08 -10.08 16 20 C -0.28 -4.63 6.81 -35.95 -0.24 -4.88 16 21 S 0.44 7.00 23.05 -107.50 -2.48 4.52 16 22 N -0.27 -4.48 12.51 60.35 0.75 -3.72 16 23 N -0.25 -4.21 10.95 33.42 0.37 -3.85 16 24 C 0.12 1.91 6.59 -82.84 -0.55 1.36 16 25 C -0.08 -1.12 5.63 -91.77 -0.52 -1.64 16 26 C -0.16 -1.81 10.11 -26.73 -0.27 -2.08 16 27 C -0.16 -1.87 10.23 -26.73 -0.27 -2.15 16 28 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 2.20 6.33 -51.93 -0.33 1.87 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.33 7.57 -51.93 -0.39 0.94 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.41 7.60 6.74 -40.82 -0.28 7.32 16 38 H 0.14 2.06 6.64 -51.93 -0.34 1.71 16 39 H 0.10 1.22 7.80 -51.93 -0.40 0.81 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -27.18 357.24 -8.73 -35.90 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.41 Total: 7.39 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -1.90 Total: 4.58 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 1.01 Total: -55.09 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.30 Total: -17.61 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 16 Polarization: 7.00 SS G_CDS: -2.48 Total: 4.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.18 -8.73 -35.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050965352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.233 kcal (2) G-P(sol) polarization free energy of solvation -27.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds