Wall clock time and date at job start Tue Mar 31 2020 20:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42099 * 109.46870 * 2 1 4 4 C 1.81397 * 103.00001 * 243.61229 * 2 1 3 5 5 C 1.53002 * 109.47183 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47183 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.46782 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99680 * 180.02562 * 7 6 5 9 9 O 1.21364 * 119.99914 * 0.02562 * 8 7 6 10 10 C 1.49357 * 119.99980 * 180.02562 * 8 7 6 11 11 O 1.21372 * 119.99733 * 359.97438 * 10 8 7 12 12 N 1.34779 * 119.99980 * 179.97438 * 10 8 7 13 13 C 1.39742 * 119.99764 * 174.88589 * 12 10 8 14 14 C 1.39343 * 119.95065 * 145.76086 * 13 12 10 15 15 C 1.38463 * 120.42397 * 180.02562 * 14 13 12 16 16 C 1.37699 * 120.32827 * 359.96126 * 15 14 13 17 17 C 1.40741 * 119.89324 * 0.02562 * 16 15 14 18 18 C 1.41417 * 120.20461 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00292 * 205.18312 * 18 17 16 20 20 C 1.39936 * 119.99701 * 25.19104 * 18 17 16 21 21 N 1.30827 * 119.99905 * 16.79212 * 20 18 17 22 22 Si 1.86797 * 119.99869 * 196.79054 * 20 18 17 23 23 H 1.48496 * 109.47355 * 94.96246 * 22 20 18 24 24 H 1.48496 * 109.47213 * 214.96295 * 22 20 18 25 25 H 1.48506 * 109.47127 * 334.96627 * 22 20 18 26 26 C 1.38302 * 119.95638 * 325.48930 * 13 12 10 27 27 H 1.09004 * 109.46787 * 176.38532 * 1 2 3 28 28 H 1.08996 * 109.47339 * 296.38803 * 1 2 3 29 29 H 1.08996 * 109.47129 * 56.38824 * 1 2 3 30 30 H 1.09001 * 109.47200 * 299.99991 * 4 2 1 31 31 H 1.09007 * 109.47318 * 60.00050 * 4 2 1 32 32 H 1.09001 * 109.47128 * 300.00136 * 5 4 2 33 33 H 1.08997 * 109.46833 * 59.99964 * 5 4 2 34 34 H 1.09001 * 109.47248 * 300.00122 * 6 5 4 35 35 H 1.08997 * 109.47217 * 60.00258 * 6 5 4 36 36 H 0.96995 * 120.00248 * 0.02562 * 7 6 5 37 37 H 0.97001 * 119.99954 * 354.88780 * 12 10 8 38 38 H 1.08000 * 119.78571 * 0.02562 * 14 13 12 39 39 H 1.08002 * 119.83645 * 179.97438 * 15 14 13 40 40 H 1.07995 * 120.04885 * 179.97438 * 16 15 14 41 41 H 0.97005 * 119.99558 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.16184 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7855 -1.5833 5 6 3.7424 -0.8616 -1.7381 6 6 4.0865 -1.5248 -3.0733 7 7 5.5422 -1.5970 -3.2217 8 6 6.0803 -2.1460 -4.3287 9 8 5.3589 -2.5801 -5.2028 10 6 7.5644 -2.2202 -4.4798 11 8 8.2858 -1.7857 -3.6058 12 7 8.1024 -2.7697 -5.5867 13 6 9.4865 -2.7433 -5.7777 14 6 10.1207 -3.8061 -6.4179 15 6 11.4916 -3.7905 -6.6118 16 6 12.2436 -2.7230 -6.1745 17 6 11.6169 -1.6422 -5.5265 18 6 12.3829 -0.5428 -5.0742 19 1 12.0242 0.0656 -4.2572 20 6 13.6056 -0.2433 -5.6854 21 7 13.8916 -0.7479 -6.8580 22 14 14.8291 0.8770 -4.8269 23 1 15.8101 0.0544 -4.0744 24 1 15.5433 1.6972 -5.8380 25 1 14.1068 1.7700 -3.8856 26 6 10.2240 -1.6599 -5.3362 27 1 -0.3633 -1.0257 -0.0648 28 1 -0.3634 0.4567 0.9205 29 1 -0.3633 0.5689 -0.8558 30 1 1.8032 -1.7915 -1.6085 31 1 1.8032 -0.1970 -2.3996 32 1 4.1609 0.1445 -1.7131 33 1 4.1616 -1.4499 -0.9219 34 1 3.6680 -2.5309 -3.0978 35 1 3.6672 -0.9369 -3.8897 36 1 6.1188 -1.2498 -2.5232 37 1 7.5289 -3.1834 -6.2506 38 1 9.5393 -4.6475 -6.7649 39 1 11.9735 -4.6195 -7.1088 40 1 13.3126 -2.7157 -6.3278 41 1 14.7391 -0.5399 -7.2818 42 1 9.7329 -0.8334 -4.8441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337614849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:04 Heat of formation + Delta-G solvation = -88.839353 kcal Electronic energy + Delta-G solvation = -25226.309856 eV Core-core repulsion = 21297.893395 eV Total energy + Delta-G solvation = -3928.416462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59279 -38.81079 -37.14077 -36.29341 -36.08956 -34.61520 -33.18818 -32.80005 -29.87692 -29.48284 -28.61395 -27.19599 -25.36104 -24.15278 -22.22693 -21.27887 -20.85324 -19.74592 -18.42772 -17.96382 -17.51709 -16.65262 -16.43140 -15.97068 -15.62616 -15.47486 -15.22100 -15.03230 -14.82124 -14.62650 -14.44849 -13.89109 -13.80106 -13.31167 -13.15677 -12.95803 -12.89114 -12.74046 -12.42884 -12.21775 -12.04047 -11.74341 -11.48256 -11.44068 -11.26645 -11.15830 -10.92262 -10.60598 -10.48003 -10.12565 -9.70172 -9.46894 -9.40399 -9.11917 -9.03562 -8.72829 -7.50377 -7.00899 -6.74922 -4.37229 1.01325 1.50597 2.12772 2.46304 2.75078 2.91688 3.08939 3.13869 3.19248 3.32168 3.54528 3.82956 3.95167 4.35104 4.45868 4.50155 4.61345 4.62001 4.71706 4.73097 4.95117 5.14542 5.28684 5.40883 5.55846 5.63119 5.66283 6.06103 6.20034 6.34791 6.58684 6.81416 6.97197 7.00756 7.07762 7.21801 7.42385 7.63969 7.76979 7.89577 8.03609 8.07584 8.15264 8.43975 8.63608 8.89363 8.93341 10.18920 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.001943 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.781750 B =14403.628074 C =15994.476865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.492 4.492 2 S 1.248 4.752 3 O -0.849 6.849 4 C -0.447 4.447 5 C -0.115 4.115 6 C 0.123 3.877 7 N -0.705 5.705 8 C 0.512 3.488 9 O -0.524 6.524 10 C 0.496 3.504 11 O -0.498 6.498 12 N -0.633 5.633 13 C 0.144 3.856 14 C -0.255 4.255 15 C -0.091 4.091 16 C -0.167 4.167 17 C 0.119 3.881 18 C -0.457 4.457 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.261 1.261 26 C -0.208 4.208 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.415 0.585 37 H 0.410 0.590 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.280 0.720 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.764 -4.098 11.778 25.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 1.446 4.554 3 O -0.844 6.844 4 C -0.584 4.584 5 C -0.154 4.154 6 C -0.001 4.001 7 N -0.360 5.360 8 C 0.293 3.707 9 O -0.400 6.400 10 C 0.277 3.723 11 O -0.373 6.373 12 N -0.278 5.278 13 C 0.052 3.948 14 C -0.276 4.276 15 C -0.111 4.111 16 C -0.187 4.187 17 C 0.116 3.884 18 C -0.487 4.487 19 H 0.098 0.902 20 C -0.142 4.142 21 N -0.419 5.419 22 Si 0.734 3.266 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.185 1.185 26 C -0.229 4.229 27 H 0.132 0.868 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.252 0.748 37 H 0.246 0.754 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.138 0.862 41 H 0.091 0.909 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.034 -3.680 12.288 24.637 hybrid contribution -0.504 1.579 -1.639 2.331 sum -21.538 -2.100 10.649 24.118 Atomic orbital electron populations 1.27657 1.21840 1.08088 1.07336 1.70604 0.86342 0.99144 0.99312 1.93166 1.73313 1.36710 1.81250 1.27624 1.01558 1.10700 1.18540 1.21377 0.93344 1.02690 0.97986 1.21446 0.79601 1.01660 0.97424 1.45742 1.08137 1.60750 1.21325 1.20327 0.89331 0.78588 0.82437 1.90740 1.62538 1.46326 1.40417 1.19933 0.88136 0.80865 0.83412 1.90817 1.61565 1.45074 1.39813 1.43133 1.07697 1.55748 1.21216 1.17451 0.79662 0.95799 1.01864 1.20067 0.94967 0.98595 1.13973 1.20476 0.92902 0.97797 0.99878 1.21386 0.99862 0.93271 1.04175 1.17483 0.90027 0.92023 0.88894 1.19599 1.02191 1.11196 1.15693 0.90248 1.25915 0.98483 0.95975 0.93874 1.69825 1.22736 1.37449 1.11928 0.86270 0.80217 0.80115 0.79970 1.19306 1.20320 1.18521 1.20967 0.93993 0.97615 1.10368 0.86850 0.87583 0.90142 0.85984 0.89255 0.90318 0.89500 0.90554 0.91111 0.74814 0.75373 0.88969 0.88796 0.86174 0.90876 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -1.61 10.74 101.05 1.09 -0.52 16 2 S 1.25 5.26 13.80 -107.50 -1.48 3.78 16 3 O -0.85 -10.24 18.14 -35.23 -0.64 -10.88 16 4 C -0.45 -1.90 5.92 37.16 0.22 -1.68 16 5 C -0.12 -0.71 5.34 -26.73 -0.14 -0.85 16 6 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 7 N -0.71 -8.11 5.55 -60.76 -0.34 -8.45 16 8 C 0.51 7.71 7.89 -11.63 -0.09 7.62 16 9 O -0.52 -8.60 16.48 5.48 0.09 -8.51 16 10 C 0.50 9.02 7.61 -11.63 -0.09 8.93 16 11 O -0.50 -10.33 14.23 5.48 0.08 -10.25 16 12 N -0.63 -11.95 5.32 -10.34 -0.06 -12.01 16 13 C 0.14 3.27 6.25 -83.82 -0.52 2.74 16 14 C -0.25 -5.61 9.97 -39.09 -0.39 -6.00 16 15 C -0.09 -2.11 10.01 -39.70 -0.40 -2.51 16 16 C -0.17 -4.33 8.69 -38.83 -0.34 -4.67 16 17 C 0.12 3.23 5.57 -106.85 -0.59 2.63 16 18 C -0.46 -12.37 9.05 -37.74 -0.34 -12.72 16 19 H 0.08 2.11 7.90 -52.49 -0.41 1.70 16 20 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 21 N -0.79 -20.50 10.94 55.55 0.61 -19.89 16 22 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 26 C -0.21 -5.33 8.39 -38.67 -0.32 -5.65 16 27 H 0.11 0.07 8.14 -51.92 -0.42 -0.35 16 28 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.12 0.17 8.14 -51.92 -0.42 -0.25 16 31 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.42 4.40 7.94 -40.82 -0.32 4.07 16 37 H 0.41 6.70 8.30 -40.82 -0.34 6.36 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.12 3.19 6.17 -52.49 -0.32 2.86 16 41 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 42 H 0.11 2.75 6.48 -52.48 -0.34 2.41 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -36.80 376.10 -8.67 -45.47 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -5.53 Total: 11.00 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.04 Total: -9.82 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.22 Total: -40.35 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.47 Total: -29.64 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.48 Total: 3.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.80 -8.67 -45.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337614849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.372 kcal (2) G-P(sol) polarization free energy of solvation -36.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds