Wall clock time and date at job start Tue Mar 31 2020 21:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86799 * 120.00180 * 2 1 4 4 H 1.48494 * 109.47010 * 274.31306 * 3 2 1 5 5 H 1.48501 * 109.46900 * 34.31460 * 3 2 1 6 6 H 1.48507 * 109.47119 * 154.31172 * 3 2 1 7 7 C 1.40036 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00390 * 338.89029 * 7 2 1 9 9 C 1.41543 * 120.00228 * 158.89848 * 7 2 1 10 10 C 1.41155 * 121.00367 * 154.86765 * 9 7 2 11 11 C 1.36590 * 119.13340 * 180.02562 * 10 9 7 12 12 N 1.32069 * 121.25726 * 359.71893 * 11 10 9 13 13 C 1.32495 * 122.22905 * 0.57641 * 12 11 10 14 14 N 1.39446 * 119.65055 * 179.70279 * 13 12 11 15 15 C 1.34776 * 120.00078 * 0.55471 * 14 13 12 16 16 O 1.21587 * 119.99583 * 5.17466 * 15 14 13 17 17 N 1.34770 * 120.00000 * 185.18556 * 15 14 13 18 18 C 1.40109 * 119.99990 * 185.33970 * 17 15 14 19 19 C 1.38877 * 120.16253 * 212.45655 * 18 17 15 20 20 C 1.38605 * 120.39033 * 180.11497 * 19 18 17 21 21 C 1.39379 * 120.01121 * 359.85902 * 20 19 18 22 22 C 1.39210 * 119.03030 * 0.09517 * 21 20 19 23 23 C 1.37630 * 121.02530 * 359.97438 * 22 21 20 24 24 C 1.51150 * 106.19506 * 179.97438 * 22 21 20 25 25 C 1.51374 * 104.21964 * 0.10646 * 24 22 21 26 26 O 1.21297 * 126.42859 * 179.97438 * 25 24 22 27 27 N 1.34357 * 107.13710 * 359.93239 * 25 24 22 28 28 C 1.38652 * 120.70017 * 359.42819 * 13 12 11 29 29 H 0.96995 * 119.99769 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.43473 * 0.04312 * 10 9 7 31 31 H 1.07998 * 119.37339 * 179.97438 * 11 10 9 32 32 H 0.97003 * 119.99897 * 180.55420 * 14 13 12 33 33 H 0.96996 * 120.00590 * 5.33017 * 17 15 14 34 34 H 1.08008 * 119.84794 * 0.03892 * 19 18 17 35 35 H 1.08003 * 120.09405 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.06316 * 179.97438 * 23 22 21 37 37 H 1.09000 * 110.50259 * 241.38266 * 24 22 21 38 38 H 1.08995 * 110.50104 * 118.83154 * 24 22 21 39 39 H 0.96998 * 123.89112 * 179.97438 * 27 25 24 40 40 H 1.07996 * 120.65902 * 180.29391 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3978 2.0990 -1.3961 5 1 1.4875 2.6246 0.7893 6 1 3.5817 1.4155 0.6069 7 6 2.0076 -1.2128 0.0005 8 1 1.5220 -2.1166 0.3378 9 6 3.3518 -1.2542 -0.4407 10 6 4.2343 -2.2597 0.0096 11 6 5.5239 -2.2630 -0.4406 12 7 5.9554 -1.3488 -1.2904 13 6 5.1739 -0.3790 -1.7421 14 7 5.6875 0.5620 -2.6338 15 6 6.9695 0.4756 -3.0405 16 8 7.6509 -0.4740 -2.7051 17 7 7.4963 1.4417 -3.8185 18 6 8.7915 1.2981 -4.3334 19 6 9.5931 2.4155 -4.5274 20 6 10.8742 2.2792 -5.0386 21 6 11.3662 1.0150 -5.3586 22 6 10.5529 -0.0970 -5.1585 23 6 9.2801 0.0369 -4.6523 24 6 11.3631 -1.2959 -5.5954 25 6 12.6844 -0.7086 -6.0432 26 8 13.6371 -1.3238 -6.4737 27 7 12.6036 0.6219 -5.8751 28 6 3.8491 -0.2931 -1.3419 29 1 -0.4849 0.8400 -0.0004 30 1 3.8942 -3.0166 0.7008 31 1 6.2024 -3.0303 -0.0982 32 1 5.1220 1.2789 -2.9615 33 1 6.9789 2.2364 -4.0223 34 1 9.2162 3.3970 -4.2798 35 1 11.4936 3.1513 -5.1872 36 1 8.6623 -0.8364 -4.5037 37 1 10.8722 -1.8071 -6.4235 38 1 11.5127 -1.9803 -4.7604 39 1 13.3216 1.2386 -6.0873 40 1 3.2114 0.4949 -1.7142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365071432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:27 Heat of formation + Delta-G solvation = 23.676555 kcal Electronic energy + Delta-G solvation = -27270.203677 eV Core-core repulsion = 23243.515071 eV Total energy + Delta-G solvation = -4026.688606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63491 -40.45229 -38.92235 -38.09573 -36.26307 -34.52023 -34.04330 -33.68059 -32.48527 -31.34994 -29.51408 -28.58394 -27.83064 -26.07557 -23.49829 -22.44552 -22.28991 -21.45932 -21.35430 -20.24743 -18.68578 -18.05583 -17.88262 -17.44913 -16.61772 -16.23167 -16.04344 -15.43524 -15.38564 -14.92114 -14.76520 -14.34213 -14.18272 -14.01125 -13.87949 -13.39050 -13.30634 -13.17650 -13.08437 -12.99449 -12.86599 -12.66748 -11.77475 -11.58490 -11.22360 -11.03647 -10.88849 -10.80019 -10.47605 -10.15441 -10.09161 -9.85726 -9.69596 -9.46003 -9.05007 -8.31863 -7.94862 -7.81192 -7.33409 -7.18306 -4.80916 0.89899 1.09475 2.17108 2.35230 2.56556 2.56947 2.75306 2.92014 3.04767 3.17453 3.34945 3.68098 3.79321 3.85784 4.10258 4.27503 4.48488 4.61506 4.85228 4.98204 5.12246 5.15728 5.37254 5.40451 5.55295 5.69913 5.75115 5.87108 6.06476 6.20495 6.22106 6.26830 6.37000 6.48366 6.50546 6.52409 6.80494 6.86741 6.94191 7.10407 7.20492 7.56961 7.69615 7.82460 7.99817 8.13047 8.37869 8.56987 8.74453 9.41062 9.82185 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024355 B = 0.002384 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.362677 B =11744.478269 C =12663.366936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.086 3.914 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.246 1.246 7 C -0.433 4.433 8 H 0.096 0.904 9 C 0.128 3.872 10 C -0.273 4.273 11 C 0.131 3.869 12 N -0.558 5.558 13 C 0.385 3.615 14 N -0.666 5.666 15 C 0.691 3.309 16 O -0.508 6.508 17 N -0.690 5.690 18 C 0.164 3.836 19 C -0.120 4.120 20 C -0.114 4.114 21 C 0.111 3.889 22 C -0.117 4.117 23 C -0.069 4.069 24 C -0.116 4.116 25 C 0.530 3.470 26 O -0.512 6.512 27 N -0.658 5.658 28 C -0.328 4.328 29 H 0.289 0.711 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.406 0.594 33 H 0.405 0.595 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.411 0.589 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.358 8.823 -10.262 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.169 1.169 7 C -0.463 4.463 8 H 0.114 0.886 9 C 0.119 3.881 10 C -0.296 4.296 11 C -0.020 4.020 12 N -0.278 5.278 13 C 0.157 3.843 14 N -0.314 5.314 15 C 0.391 3.609 16 O -0.377 6.377 17 N -0.340 5.340 18 C 0.068 3.932 19 C -0.141 4.141 20 C -0.136 4.136 21 C 0.014 3.986 22 C -0.120 4.120 23 C -0.090 4.090 24 C -0.155 4.155 25 C 0.318 3.682 26 O -0.387 6.387 27 N -0.302 5.302 28 C -0.354 4.354 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.146 0.854 32 H 0.241 0.759 33 H 0.240 0.760 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.249 0.751 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.052 7.474 -10.422 20.546 hybrid contribution -1.080 2.064 -0.003 2.329 sum 14.972 9.538 -10.426 20.587 Atomic orbital electron populations 1.69674 1.08278 1.30773 1.32621 1.26257 0.94704 1.02148 0.90490 0.86207 0.81226 0.79305 0.78613 1.19707 1.21754 1.16896 1.19531 0.93869 0.96642 1.36245 0.88623 1.17638 0.92715 0.89642 0.88095 1.21633 0.94965 1.04934 1.08099 1.21587 0.93615 0.94653 0.92148 1.67272 1.36676 1.05949 1.17874 1.17708 0.88722 0.88608 0.89236 1.42603 1.10630 1.30925 1.47255 1.16047 0.82397 0.83186 0.79303 1.91047 1.58716 1.31188 1.56711 1.42756 1.14965 1.23284 1.52951 1.17237 0.84798 0.93646 0.97524 1.20704 0.92833 0.98022 1.02582 1.20216 0.95809 0.94306 1.03250 1.18168 0.85757 0.94818 0.99866 1.19638 0.94710 0.93849 1.03840 1.20332 0.94367 0.97843 0.96449 1.21057 0.92484 0.97628 1.04288 1.20614 0.89316 0.81768 0.76519 1.90816 1.37319 1.65003 1.45535 1.43697 1.15101 1.09229 1.62149 1.21146 0.94576 1.08534 1.11142 0.90052 0.87273 0.85379 0.75925 0.75981 0.84868 0.85278 0.83462 0.85832 0.85608 0.75139 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.50 13.92 55.55 0.77 -18.73 16 2 C 0.09 2.09 5.41 -17.34 -0.09 2.00 16 3 Si 0.92 19.13 24.53 -169.99 -4.17 14.96 16 4 H -0.27 -5.21 6.58 56.52 0.37 -4.84 16 5 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.25 -5.38 6.93 56.52 0.39 -4.99 16 7 C -0.43 -10.99 9.63 -37.65 -0.36 -11.35 16 8 H 0.10 2.53 8.06 -52.49 -0.42 2.10 16 9 C 0.13 3.09 5.21 -106.55 -0.56 2.54 16 10 C -0.27 -6.15 9.85 -39.07 -0.38 -6.54 16 11 C 0.13 2.86 11.10 -18.04 -0.20 2.66 16 12 N -0.56 -12.93 7.86 -12.76 -0.10 -13.03 16 13 C 0.39 8.38 7.42 -154.68 -1.15 7.23 16 14 N -0.67 -11.33 5.40 -15.86 -0.09 -11.42 16 15 C 0.69 11.37 8.27 -86.92 -0.72 10.65 16 16 O -0.51 -10.31 12.25 5.29 0.06 -10.25 16 17 N -0.69 -7.90 5.36 -14.16 -0.08 -7.98 16 18 C 0.16 1.85 6.31 -83.57 -0.53 1.33 16 19 C -0.12 -1.02 9.96 -39.21 -0.39 -1.41 16 20 C -0.11 -0.91 10.11 -39.02 -0.39 -1.30 16 21 C 0.11 1.04 7.12 -83.47 -0.59 0.45 16 22 C -0.12 -1.26 6.35 -104.26 -0.66 -1.92 16 23 C -0.07 -0.86 8.65 -39.53 -0.34 -1.20 16 24 C -0.12 -1.09 6.87 -28.48 -0.20 -1.29 16 25 C 0.53 5.73 8.71 -10.84 -0.09 5.64 16 26 O -0.51 -7.19 18.03 5.54 0.10 -7.09 16 27 N -0.66 -5.73 5.89 -9.58 -0.06 -5.78 16 28 C -0.33 -7.45 7.23 -38.45 -0.28 -7.73 16 29 H 0.29 6.38 8.29 -40.82 -0.34 6.05 16 30 H 0.11 2.27 8.06 -52.49 -0.42 1.84 16 31 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.41 5.34 8.72 -40.82 -0.36 4.99 16 33 H 0.40 3.12 8.84 -40.82 -0.36 2.75 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 36 H 0.15 2.15 6.37 -52.49 -0.33 1.81 16 37 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.41 2.61 8.96 -40.82 -0.37 2.25 16 40 H 0.11 2.33 4.40 -52.49 -0.23 2.10 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -32.77 344.22 -9.09 -41.86 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -3.78 Total: 12.52 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -6.94 Total: -0.25 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.46 Total: -56.94 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.16 Total: -17.34 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.17 Total: 14.96 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.77 -9.09 -41.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365071432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.537 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds