Wall clock time and date at job start Tue Mar 31 2020 21:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86799 * 120.00352 * 2 1 4 4 H 1.48495 * 109.47299 * 270.00862 * 3 2 1 5 5 H 1.48505 * 109.46695 * 30.00374 * 3 2 1 6 6 H 1.48496 * 109.46955 * 150.00260 * 3 2 1 7 7 C 1.40027 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99632 * 196.92990 * 7 2 1 9 9 C 1.41538 * 120.00344 * 16.93108 * 7 2 1 10 10 C 1.41175 * 120.99835 * 203.67380 * 9 7 2 11 11 C 1.36585 * 119.12954 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.25806 * 359.74158 * 11 10 9 13 13 C 1.32495 * 122.23257 * 0.53038 * 12 11 10 14 14 N 1.39446 * 119.65310 * 179.74900 * 13 12 11 15 15 C 1.34781 * 119.99858 * 356.67989 * 14 13 12 16 16 O 1.21585 * 119.99935 * 4.78704 * 15 14 13 17 17 N 1.34780 * 119.99985 * 184.77807 * 15 14 13 18 18 C 1.39940 * 119.99779 * 184.65662 * 17 15 14 19 19 C 1.38942 * 119.88384 * 143.66753 * 18 17 15 20 20 C 1.38258 * 119.75666 * 179.97438 * 19 18 17 21 21 C 1.37754 * 120.00123 * 359.97438 * 20 19 18 22 22 C 1.38967 * 120.92105 * 0.02562 * 21 20 19 23 23 C 1.38566 * 119.89021 * 323.39513 * 18 17 15 24 24 N 1.39543 * 110.21868 * 179.97438 * 22 21 20 25 25 C 1.34366 * 112.25215 * 0.02562 * 24 22 21 26 26 O 1.21282 * 126.43411 * 180.02562 * 25 24 22 27 27 C 1.51168 * 132.75512 * 179.97438 * 21 20 19 28 28 C 1.38647 * 120.69958 * 359.47096 * 13 12 11 29 29 H 0.97006 * 119.99698 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.42868 * 0.04026 * 10 9 7 31 31 H 1.07996 * 119.37176 * 179.97438 * 11 10 9 32 32 H 0.96996 * 120.00512 * 176.40310 * 14 13 12 33 33 H 0.96998 * 119.99688 * 4.66853 * 17 15 14 34 34 H 1.07996 * 120.12191 * 0.02562 * 19 18 17 35 35 H 1.07994 * 119.99892 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.95834 * 359.97438 * 23 18 17 37 37 H 0.96996 * 123.87605 * 179.97438 * 24 22 21 38 38 H 1.08995 * 110.51068 * 298.65168 * 27 21 20 39 39 H 1.09002 * 110.50367 * 61.35289 * 27 21 20 40 40 H 1.08005 * 120.66467 * 180.27585 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4889 2.0465 -1.4000 5 1 1.4390 2.6526 0.7002 6 1 3.5391 1.4400 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0524 -1.2332 0.2718 9 6 1.3458 -2.4118 -0.3580 10 6 1.8223 -3.6649 0.0843 11 6 1.1543 -4.7979 -0.2840 12 7 0.0723 -4.7407 -1.0392 13 6 -0.4169 -3.5938 -1.4872 14 7 -1.5601 -3.5963 -2.2857 15 6 -2.1228 -4.7646 -2.6531 16 8 -1.6865 -5.8129 -2.2183 17 7 -3.1693 -4.7709 -3.5025 18 6 -3.8153 -5.9741 -3.8080 19 6 -5.1920 -5.9928 -3.9946 20 6 -5.8274 -7.1829 -4.2968 21 6 -5.0958 -8.3444 -4.4124 22 6 -3.7183 -8.3419 -4.2287 23 6 -3.0791 -7.1418 -3.9289 24 7 -3.2071 -9.6295 -4.3962 25 6 -4.1665 -10.5238 -4.6880 26 8 -4.0096 -11.7104 -4.8838 27 6 -5.4803 -9.7726 -4.7245 28 6 0.1926 -2.3906 -1.1660 29 1 -0.4850 0.8401 0.0004 30 1 2.7033 -3.7267 0.7059 31 1 1.5156 -5.7586 0.0518 32 1 -1.9528 -2.7573 -2.5733 33 1 -3.4745 -3.9414 -3.9021 34 1 -5.7635 -5.0809 -3.9047 35 1 -6.8973 -7.2020 -4.4422 36 1 -2.0085 -7.1215 -3.7877 37 1 -2.2670 -9.8531 -4.3124 38 1 -6.1621 -10.1588 -3.9669 39 1 -5.9309 -9.8391 -5.7147 40 1 -0.2092 -1.4557 -1.5279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365071496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:29 Heat of formation + Delta-G solvation = 21.344599 kcal Electronic energy + Delta-G solvation = -27155.624119 eV Core-core repulsion = 23128.834392 eV Total energy + Delta-G solvation = -4026.789727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.60048 -40.31329 -38.76567 -37.95261 -36.18123 -34.48290 -34.04235 -33.83350 -31.74947 -30.59669 -29.78888 -28.84458 -27.13000 -26.07088 -23.20530 -22.66481 -22.02033 -21.62000 -20.95115 -20.16494 -18.74752 -17.95696 -17.69479 -17.15846 -16.26544 -16.19366 -15.76285 -15.36655 -15.28490 -14.62660 -14.59929 -14.33798 -14.26908 -14.10492 -13.71148 -13.63682 -13.29325 -12.95981 -12.79547 -12.67196 -12.46079 -12.28001 -11.53269 -11.51659 -11.30312 -11.18346 -10.97752 -10.42992 -10.35135 -10.21971 -10.09523 -9.87026 -9.67276 -9.43236 -8.45337 -8.08307 -8.03130 -7.81459 -7.14160 -6.89281 -4.68763 0.96722 1.19757 2.25382 2.58849 2.63211 2.72585 2.93186 2.96820 3.00117 3.17228 3.48257 3.77305 3.78763 3.92825 4.22183 4.33159 4.60492 4.70664 5.00984 5.06476 5.11829 5.21889 5.44152 5.59791 5.61759 5.77199 5.92954 6.06281 6.21539 6.23806 6.45726 6.48728 6.54065 6.65873 6.72586 6.85556 6.95335 7.02067 7.10168 7.32238 7.37689 7.75996 7.76541 7.97220 8.17094 8.36224 8.63846 8.67329 8.90985 9.61790 9.98242 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.002198 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.447352 B =12737.073619 C =13658.005577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.144 3.856 10 C -0.283 4.283 11 C 0.121 3.879 12 N -0.555 5.555 13 C 0.352 3.648 14 N -0.661 5.661 15 C 0.689 3.311 16 O -0.512 6.512 17 N -0.693 5.693 18 C 0.212 3.788 19 C -0.168 4.168 20 C -0.048 4.048 21 C -0.168 4.168 22 C 0.158 3.842 23 C -0.137 4.137 24 N -0.656 5.656 25 C 0.528 3.472 26 O -0.512 6.512 27 C -0.109 4.109 28 C -0.246 4.246 29 H 0.282 0.718 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.407 0.593 33 H 0.406 0.594 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.415 0.585 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 -5.336 -9.947 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.484 4.484 8 H 0.101 0.899 9 C 0.136 3.864 10 C -0.307 4.307 11 C -0.032 4.032 12 N -0.275 5.275 13 C 0.127 3.873 14 N -0.308 5.308 15 C 0.389 3.611 16 O -0.382 6.382 17 N -0.342 5.342 18 C 0.115 3.885 19 C -0.190 4.190 20 C -0.067 4.067 21 C -0.172 4.172 22 C 0.061 3.939 23 C -0.161 4.161 24 N -0.299 5.299 25 C 0.316 3.684 26 O -0.387 6.387 27 C -0.148 4.148 28 C -0.272 4.272 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.241 0.759 33 H 0.242 0.758 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.165 0.835 37 H 0.253 0.747 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.347 -7.629 -9.862 17.547 hybrid contribution 0.939 2.530 0.133 2.702 sum -11.409 -5.099 -9.729 15.837 Atomic orbital electron populations 1.69782 1.07713 1.29463 1.34203 1.25971 0.94785 1.01553 0.91829 0.86239 0.80550 0.80129 0.79443 1.19140 1.20194 1.18444 1.19600 0.97994 0.90685 1.40161 0.89869 1.17561 0.89778 0.92314 0.86777 1.21670 1.05394 0.93948 1.09639 1.21461 0.90876 0.96897 0.93980 1.67173 1.15512 1.26596 1.18191 1.17906 0.86406 0.91000 0.92034 1.42513 1.28399 1.07233 1.52694 1.16098 0.79936 0.85308 0.79746 1.91027 1.61504 1.29558 1.56083 1.42806 1.34295 1.08892 1.48250 1.17013 0.90303 0.85304 0.95885 1.20810 0.92039 0.98868 1.07288 1.19932 0.99407 0.89813 0.97573 1.19727 0.93023 0.95141 1.09321 1.17873 0.92669 0.85063 0.98343 1.20488 1.01854 0.89251 1.04491 1.43746 1.11787 1.07143 1.67245 1.20644 0.87161 0.85759 0.74799 1.90809 1.85000 1.13448 1.49433 1.20981 0.96789 0.91642 1.05424 1.21486 1.02653 0.95337 1.07680 0.90671 0.87960 0.85977 0.75862 0.75842 0.84986 0.85063 0.83487 0.74707 0.86177 0.86201 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.60 10.92 55.55 0.61 -18.00 16 2 C 0.08 1.81 5.20 -17.34 -0.09 1.72 16 3 Si 0.91 17.28 29.59 -169.99 -5.03 12.25 16 4 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.45 -11.27 9.12 -37.65 -0.34 -11.61 16 8 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 9 C 0.14 3.66 5.60 -106.55 -0.60 3.07 16 10 C -0.28 -6.74 9.85 -39.06 -0.38 -7.12 16 11 C 0.12 2.83 11.10 -18.05 -0.20 2.63 16 12 N -0.56 -13.68 7.85 -12.76 -0.10 -13.78 16 13 C 0.35 8.14 7.42 -154.69 -1.15 6.99 16 14 N -0.66 -12.00 5.40 -15.86 -0.09 -12.08 16 15 C 0.69 12.15 8.35 -86.91 -0.73 11.43 16 16 O -0.51 -11.08 12.11 5.29 0.06 -11.02 16 17 N -0.69 -8.58 5.33 -14.28 -0.08 -8.66 16 18 C 0.21 2.58 6.26 -83.77 -0.52 2.06 16 19 C -0.17 -1.55 9.98 -39.31 -0.39 -1.94 16 20 C -0.05 -0.40 10.03 -39.75 -0.40 -0.80 16 21 C -0.17 -1.62 6.35 -104.30 -0.66 -2.29 16 22 C 0.16 1.86 7.10 -83.71 -0.59 1.27 16 23 C -0.14 -1.86 8.71 -39.09 -0.34 -2.20 16 24 N -0.66 -7.34 5.88 -9.72 -0.06 -7.40 16 25 C 0.53 6.07 8.71 -10.84 -0.09 5.98 16 26 O -0.51 -7.51 18.03 5.56 0.10 -7.41 16 27 C -0.11 -0.89 6.88 -28.47 -0.20 -1.09 16 28 C -0.25 -5.96 8.63 -38.45 -0.33 -6.29 16 29 H 0.28 6.02 8.29 -40.82 -0.34 5.68 16 30 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 32 H 0.41 5.83 8.72 -40.82 -0.36 5.47 16 33 H 0.41 3.48 8.85 -40.82 -0.36 3.12 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.15 2.35 6.31 -52.49 -0.33 2.02 16 37 H 0.41 4.21 8.96 -40.82 -0.37 3.85 16 38 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.13 3.05 6.20 -52.48 -0.33 2.73 16 LS Contribution 349.48 15.07 5.27 5.27 Total: -1.00 -32.95 349.48 -10.16 -43.11 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -3.83 Total: 15.91 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -7.02 Total: 1.81 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.29 Total: -59.91 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.16 Total: -18.43 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.95 -10.16 -43.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365071496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.454 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds