Wall clock time and date at job start Tue Mar 31 2020 21:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86799 * 120.00352 * 2 1 4 4 H 1.48495 * 109.47299 * 270.00862 * 3 2 1 5 5 H 1.48505 * 109.46695 * 30.00374 * 3 2 1 6 6 H 1.48496 * 109.46955 * 150.00260 * 3 2 1 7 7 C 1.40027 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99632 * 196.92990 * 7 2 1 9 9 C 1.41538 * 120.00344 * 16.93108 * 7 2 1 10 10 C 1.41175 * 120.99835 * 203.67380 * 9 7 2 11 11 C 1.36585 * 119.12954 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.25806 * 359.74158 * 11 10 9 13 13 C 1.32495 * 122.23257 * 0.53038 * 12 11 10 14 14 N 1.39446 * 119.65310 * 179.74900 * 13 12 11 15 15 C 1.34781 * 119.99858 * 356.67989 * 14 13 12 16 16 O 1.21585 * 119.99935 * 4.78704 * 15 14 13 17 17 N 1.34780 * 119.99985 * 184.77807 * 15 14 13 18 18 C 1.39940 * 119.99779 * 184.65662 * 17 15 14 19 19 C 1.38942 * 119.88384 * 143.66753 * 18 17 15 20 20 C 1.38258 * 119.75666 * 179.97438 * 19 18 17 21 21 C 1.37754 * 120.00123 * 359.97438 * 20 19 18 22 22 C 1.38967 * 120.92105 * 0.02562 * 21 20 19 23 23 C 1.38566 * 119.89021 * 323.39513 * 18 17 15 24 24 N 1.39543 * 110.21868 * 179.97438 * 22 21 20 25 25 C 1.34366 * 112.25215 * 0.02562 * 24 22 21 26 26 O 1.21282 * 126.43411 * 180.02562 * 25 24 22 27 27 C 1.51168 * 132.75512 * 179.97438 * 21 20 19 28 28 C 1.38647 * 120.69958 * 359.47096 * 13 12 11 29 29 H 0.97006 * 119.99698 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.42868 * 0.04026 * 10 9 7 31 31 H 1.07996 * 119.37176 * 179.97438 * 11 10 9 32 32 H 0.96996 * 120.00512 * 176.40310 * 14 13 12 33 33 H 0.96998 * 119.99688 * 4.66853 * 17 15 14 34 34 H 1.07996 * 120.12191 * 0.02562 * 19 18 17 35 35 H 1.07994 * 119.99892 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.95834 * 359.97438 * 23 18 17 37 37 H 0.96996 * 123.87605 * 179.97438 * 24 22 21 38 38 H 1.08995 * 110.51068 * 298.65168 * 27 21 20 39 39 H 1.09002 * 110.50367 * 61.35289 * 27 21 20 40 40 H 1.08005 * 120.66467 * 180.27585 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4889 2.0465 -1.4000 5 1 1.4390 2.6526 0.7002 6 1 3.5391 1.4400 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0524 -1.2332 0.2718 9 6 1.3458 -2.4118 -0.3580 10 6 1.8223 -3.6649 0.0843 11 6 1.1543 -4.7979 -0.2840 12 7 0.0723 -4.7407 -1.0392 13 6 -0.4169 -3.5938 -1.4872 14 7 -1.5601 -3.5963 -2.2857 15 6 -2.1228 -4.7646 -2.6531 16 8 -1.6865 -5.8129 -2.2183 17 7 -3.1693 -4.7709 -3.5025 18 6 -3.8153 -5.9741 -3.8080 19 6 -5.1920 -5.9928 -3.9946 20 6 -5.8274 -7.1829 -4.2968 21 6 -5.0958 -8.3444 -4.4124 22 6 -3.7183 -8.3419 -4.2287 23 6 -3.0791 -7.1418 -3.9289 24 7 -3.2071 -9.6295 -4.3962 25 6 -4.1665 -10.5238 -4.6880 26 8 -4.0096 -11.7104 -4.8838 27 6 -5.4803 -9.7726 -4.7245 28 6 0.1926 -2.3906 -1.1660 29 1 -0.4850 0.8401 0.0004 30 1 2.7033 -3.7267 0.7059 31 1 1.5156 -5.7586 0.0518 32 1 -1.9528 -2.7573 -2.5733 33 1 -3.4745 -3.9414 -3.9021 34 1 -5.7635 -5.0809 -3.9047 35 1 -6.8973 -7.2020 -4.4422 36 1 -2.0085 -7.1215 -3.7877 37 1 -2.2670 -9.8531 -4.3124 38 1 -6.1621 -10.1588 -3.9669 39 1 -5.9309 -9.8391 -5.7147 40 1 -0.2092 -1.4557 -1.5279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365071496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:29 Heat of formation + Delta-G solvation = -0.832605 kcal Electronic energy + Delta-G solvation = -27156.585794 eV Core-core repulsion = 23128.834392 eV Total energy + Delta-G solvation = -4027.751403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.48026 -41.64405 -40.19251 -39.20698 -37.25391 -36.12467 -35.58904 -35.01850 -32.67848 -32.40221 -30.61105 -30.45591 -28.14809 -27.87485 -24.31951 -23.89852 -23.67814 -22.53692 -22.17234 -21.49842 -19.97214 -19.45051 -18.98971 -18.18591 -17.53385 -17.09504 -17.04143 -16.83348 -16.57743 -16.10468 -16.03868 -15.67070 -15.43489 -15.22184 -15.02340 -14.72844 -14.46535 -14.34084 -14.22278 -14.09827 -13.45515 -13.19616 -13.00456 -12.93854 -12.67152 -12.42549 -12.19985 -12.01802 -11.90861 -11.57348 -11.35807 -11.21914 -11.15077 -10.93106 -9.95615 -9.63813 -9.39190 -8.97912 -8.80670 -8.63871 -6.56594 0.13104 0.34103 0.82849 0.99552 1.38929 1.42228 1.47371 1.54640 1.57729 2.00203 2.16183 2.20512 2.78087 2.85410 3.03318 3.21445 3.49974 3.75510 3.95155 4.10128 4.27359 4.30304 4.40013 4.57143 4.68181 4.72178 4.82398 4.86061 4.91998 5.03828 5.07959 5.21930 5.28363 5.35810 5.48250 5.48625 5.60783 5.62352 5.77517 5.83156 5.95780 6.07335 6.25287 6.54377 6.77404 6.81031 6.87218 6.89315 7.49996 7.85209 8.25355 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.002198 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.447352 B =12737.073619 C =13658.005577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.041 3.959 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.483 4.483 8 H 0.083 0.917 9 C 0.115 3.885 10 C -0.298 4.298 11 C 0.115 3.885 12 N -0.580 5.580 13 C 0.353 3.647 14 N -0.653 5.653 15 C 0.688 3.312 16 O -0.556 6.556 17 N -0.670 5.670 18 C 0.185 3.815 19 C -0.152 4.152 20 C -0.036 4.036 21 C -0.158 4.158 22 C 0.137 3.863 23 C -0.161 4.161 24 N -0.660 5.660 25 C 0.521 3.479 26 O -0.552 6.552 27 C -0.097 4.097 28 C -0.262 4.262 29 H 0.294 0.706 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.423 0.577 33 H 0.426 0.574 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.110 0.890 37 H 0.412 0.588 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.048 -3.902 -10.856 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.177 4.177 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.513 4.513 8 H 0.101 0.899 9 C 0.106 3.894 10 C -0.322 4.322 11 C -0.038 4.038 12 N -0.300 5.300 13 C 0.126 3.874 14 N -0.303 5.303 15 C 0.388 3.612 16 O -0.429 6.429 17 N -0.321 5.321 18 C 0.089 3.911 19 C -0.173 4.173 20 C -0.055 4.055 21 C -0.161 4.161 22 C 0.040 3.960 23 C -0.184 4.184 24 N -0.302 5.302 25 C 0.311 3.689 26 O -0.431 6.431 27 C -0.136 4.136 28 C -0.288 4.288 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.163 0.837 32 H 0.261 0.739 33 H 0.265 0.735 34 H 0.183 0.817 35 H 0.194 0.806 36 H 0.128 0.872 37 H 0.250 0.750 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.327 -6.159 -10.814 19.743 hybrid contribution 1.764 2.031 0.388 2.718 sum -13.563 -4.128 -10.426 17.598 Atomic orbital electron populations 1.69802 1.08964 1.31092 1.33449 1.26798 0.95587 1.04489 0.90794 0.85126 0.79003 0.75508 0.79655 1.18449 1.19095 1.18429 1.19866 0.98282 0.91688 1.41450 0.89882 1.17993 0.90678 0.93251 0.87449 1.21837 1.06128 0.93841 1.10346 1.21867 0.90598 0.97848 0.93503 1.67312 1.16241 1.27352 1.19089 1.18100 0.87270 0.90340 0.91728 1.42353 1.27301 1.08558 1.52050 1.16238 0.80630 0.84269 0.80055 1.91007 1.63113 1.30913 1.57850 1.42421 1.32609 1.10258 1.46798 1.17291 0.91669 0.84436 0.97687 1.21186 0.90387 1.00724 1.05002 1.20427 1.01361 0.88397 0.95305 1.20076 0.91755 0.96510 1.07791 1.17977 0.93989 0.84499 0.99573 1.20326 1.00451 0.91026 1.06625 1.43892 1.12019 1.07391 1.66881 1.21272 0.88449 0.85343 0.73843 1.90784 1.85749 1.15089 1.51448 1.21065 0.94972 0.89728 1.07813 1.21470 1.03131 0.95643 1.08518 0.89547 0.86801 0.83746 0.73884 0.73457 0.81697 0.80635 0.87203 0.75038 0.83722 0.83177 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.11 10.92 21.84 0.24 -37.87 16 2 C 0.04 1.90 5.20 85.29 0.44 2.34 16 3 Si 0.99 34.75 29.59 68.60 2.03 36.78 16 4 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 5 H -0.27 -8.88 7.11 99.48 0.71 -8.17 16 6 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 7 C -0.48 -24.42 9.12 23.52 0.21 -24.21 16 8 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 9 C 0.11 6.00 5.60 -21.11 -0.12 5.89 16 10 C -0.30 -14.65 9.85 22.60 0.22 -14.43 16 11 C 0.11 5.52 11.10 84.27 0.94 6.46 16 12 N -0.58 -29.49 7.85 -194.28 -1.52 -31.02 16 13 C 0.35 16.76 7.42 132.77 0.99 17.74 16 14 N -0.65 -24.03 5.40 -322.36 -1.74 -25.77 16 15 C 0.69 24.66 8.35 179.05 1.50 26.15 16 16 O -0.56 -25.10 12.11 -3.98 -0.05 -25.14 16 17 N -0.67 -16.03 5.33 -317.35 -1.69 -17.72 16 18 C 0.19 4.29 6.26 38.09 0.24 4.53 16 19 C -0.15 -2.21 9.98 22.44 0.22 -1.99 16 20 C -0.04 -0.42 10.03 22.16 0.22 -0.20 16 21 C -0.16 -2.56 6.35 -19.66 -0.12 -2.68 16 22 C 0.14 3.19 7.10 38.33 0.27 3.46 16 23 C -0.16 -4.48 8.71 22.59 0.20 -4.29 16 24 N -0.66 -15.21 5.88 -303.27 -1.78 -16.99 16 25 C 0.52 11.67 8.71 87.94 0.77 12.43 16 26 O -0.55 -16.35 18.03 -3.04 -0.05 -16.41 16 27 C -0.10 -1.27 6.88 29.47 0.20 -1.07 16 28 C -0.26 -13.05 8.63 23.00 0.20 -12.85 16 29 H 0.29 12.27 8.29 -92.70 -0.77 11.50 16 30 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 31 H 0.15 6.06 8.06 -2.91 -0.02 6.04 16 32 H 0.42 12.03 8.72 -92.71 -0.81 11.22 16 33 H 0.43 6.48 8.85 -92.71 -0.82 5.66 16 34 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.11 3.86 6.31 -2.91 -0.02 3.84 16 37 H 0.41 9.24 8.96 -92.71 -0.83 8.41 16 38 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.13 6.19 6.20 -2.91 -0.02 6.18 16 Total: -1.00 -75.75 349.48 0.50 -75.26 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -1.30 Total: 41.60 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.37 Total: 17.30 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -6.50 Total: -129.38 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.10 Total: -41.55 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.78 kcal Total: -75.75 0.50 -75.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365071496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.423 kcal (2) G-P(sol) polarization free energy of solvation -75.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds