Wall clock time and date at job start Tue Mar 31 2020 20:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99466 * 2 1 4 4 H 1.48501 * 109.47257 * 269.99630 * 3 2 1 5 5 H 1.48497 * 109.47281 * 29.99914 * 3 2 1 6 6 H 1.48504 * 109.46792 * 149.99850 * 3 2 1 7 7 C 1.38807 * 120.00645 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00346 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99626 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.64847 * 359.97438 * 9 7 2 11 11 C 1.54908 * 104.83420 * 155.90763 * 10 9 7 12 12 C 1.55161 * 101.57977 * 37.00712 * 11 10 9 13 13 O 1.42893 * 110.72103 * 83.03910 * 12 11 10 14 14 C 1.53004 * 110.72031 * 206.13623 * 12 11 10 15 15 N 1.46499 * 109.47198 * 179.97438 * 14 12 11 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 12 17 17 O 1.21623 * 120.00244 * 359.72094 * 16 15 14 18 18 C 1.47169 * 119.99709 * 179.72413 * 16 15 14 19 19 S 1.77341 * 128.47760 * 0.02562 * 18 16 15 20 20 N 1.56631 * 95.28335 * 179.97438 * 19 18 16 21 21 N 1.27340 * 109.74121 * 0.02562 * 20 19 18 22 22 C 1.31232 * 120.03846 * 359.68825 * 21 20 19 23 23 C 1.50705 * 124.05858 * 180.37240 * 22 21 20 24 24 C 1.52999 * 117.49673 * 8.93188 * 23 22 21 25 25 C 1.52994 * 117.49585 * 300.27581 * 23 22 21 26 26 C 1.47024 * 125.64418 * 180.02562 * 9 7 2 27 27 H 0.96995 * 120.00540 * 0.02562 * 1 2 3 28 28 H 1.08997 * 110.36798 * 37.06289 * 10 9 7 29 29 H 1.09005 * 110.45956 * 274.78840 * 10 9 7 30 30 H 1.09001 * 111.00246 * 278.93823 * 11 10 9 31 31 H 1.08993 * 111.00681 * 155.07603 * 11 10 9 32 32 H 0.96704 * 114.00451 * 182.43888 * 13 12 11 33 33 H 1.09009 * 109.46730 * 59.99757 * 14 12 11 34 34 H 1.08998 * 109.46846 * 300.00302 * 14 12 11 35 35 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 36 36 H 1.08995 * 115.55365 * 154.60357 * 23 22 21 37 37 H 1.09005 * 117.49889 * 0.02562 * 24 23 22 38 38 H 1.09002 * 117.49903 * 145.01834 * 24 23 22 39 39 H 1.09001 * 117.49882 * 214.97661 * 25 23 22 40 40 H 1.09000 * 117.50336 * 359.97438 * 25 23 22 41 41 H 1.09004 * 109.87974 * 61.61066 * 26 9 7 42 42 H 1.08997 * 109.88589 * 300.43824 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5332 0.0005 11 6 -0.4014 -3.9326 -0.6107 12 6 0.7787 -4.7524 -0.0253 13 8 0.4723 -5.2084 1.2938 14 6 1.1236 -5.9317 -0.9371 15 7 2.2394 -6.6853 -0.3598 16 6 2.7210 -7.7706 -0.9975 17 8 2.2260 -8.1273 -2.0496 18 6 3.8459 -8.5241 -0.4207 19 16 4.7288 -8.2088 1.0847 20 7 5.7059 -9.4240 0.9360 21 7 5.4445 -10.0573 -0.1374 22 6 4.4690 -9.6540 -0.9171 23 6 4.0770 -10.3384 -2.2013 24 6 4.7252 -11.6900 -2.5077 25 6 5.1392 -10.4457 -3.2972 26 6 1.9321 -3.7274 0.0016 27 1 -0.4851 0.8400 -0.0004 28 1 -0.5991 -1.7591 -0.6153 29 1 -0.5289 -2.4859 1.0183 30 1 -0.3516 -3.8989 -1.6991 31 1 -1.3586 -4.3330 -0.2770 32 1 1.1920 -5.6945 1.7192 33 1 1.4078 -5.5590 -1.9212 34 1 0.2551 -6.5834 -1.0322 35 1 2.6345 -6.4006 0.4791 36 1 3.0433 -10.1935 -2.5148 37 1 5.4349 -12.0844 -1.7803 38 1 4.1179 -12.4342 -3.0231 39 1 4.8041 -10.3717 -4.3318 40 1 6.1213 -10.0209 -3.0897 41 1 2.5283 -3.8636 0.9039 42 1 2.5587 -3.8514 -0.8816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672003190.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:51 Heat of formation + Delta-G solvation = 48.949844 kcal Electronic energy + Delta-G solvation = -26732.171641 eV Core-core repulsion = 22842.022919 eV Total energy + Delta-G solvation = -3890.148723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43205 -40.01354 -38.55024 -37.29448 -35.31240 -34.39266 -32.40331 -32.07397 -29.78925 -28.71812 -27.55482 -25.82969 -24.38539 -23.44041 -22.66440 -22.22366 -20.91681 -20.22366 -20.00144 -18.48039 -18.21093 -17.03045 -16.52288 -16.35056 -16.25233 -15.71730 -15.34722 -14.82249 -14.79003 -14.44113 -14.27401 -13.87693 -13.44226 -13.34593 -13.04432 -12.61090 -12.48728 -12.23122 -12.19441 -11.84215 -11.66797 -11.53717 -11.10749 -10.92368 -10.87706 -10.79476 -10.71151 -10.46738 -10.30334 -10.20299 -10.19897 -9.99046 -9.79932 -9.77139 -9.53896 -9.35176 -8.71072 -6.92718 -5.72318 -3.15066 -0.63553 0.42837 1.09455 1.52697 2.63761 2.67040 3.35664 3.39058 3.40606 3.42757 3.63723 4.02731 4.27549 4.36906 4.42025 4.57700 4.67797 4.71640 4.75208 5.04998 5.26112 5.29205 5.36095 5.42817 5.52453 5.56593 5.71534 5.80400 5.83683 5.88099 6.01821 6.15182 6.31609 6.41055 6.49836 6.52469 6.99063 7.29139 7.49538 7.54251 7.71054 7.77756 7.81415 8.27962 9.13997 9.74346 10.37883 11.31453 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.002583 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.180667 B =10838.124601 C =11214.515793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.916 3.084 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.156 3.844 11 C -0.127 4.127 12 C 0.104 3.896 13 O -0.540 6.540 14 C 0.105 3.895 15 N -0.716 5.716 16 C 0.604 3.396 17 O -0.511 6.511 18 C -0.288 4.288 19 S 0.423 5.577 20 N -0.251 5.251 21 N -0.248 5.248 22 C 0.133 3.867 23 C -0.090 4.090 24 C -0.161 4.161 25 C -0.154 4.154 26 C 0.115 3.885 27 H 0.253 0.747 28 H 0.109 0.891 29 H 0.019 0.981 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.362 0.638 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.396 0.604 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.023 0.977 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.605 -20.373 -1.471 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.166 4.166 12 C 0.062 3.938 13 O -0.344 6.344 14 C -0.018 4.018 15 N -0.369 5.369 16 C 0.388 3.612 17 O -0.387 6.387 18 C -0.428 4.428 19 S 0.560 5.440 20 N -0.232 5.232 21 N -0.114 5.114 22 C -0.014 4.014 23 C -0.111 4.111 24 C -0.198 4.198 25 C -0.192 4.192 26 C -0.011 4.011 27 H 0.064 0.936 28 H 0.126 0.874 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.208 0.792 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.231 0.769 36 H 0.163 0.837 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.041 0.959 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.852 -20.087 -0.774 21.238 hybrid contribution 0.569 0.577 -0.432 0.918 sum 7.421 -19.510 -1.205 20.908 Atomic orbital electron populations 1.69780 1.04909 1.24956 1.57170 1.24798 0.95741 0.97782 1.02128 0.86064 0.78512 0.83216 0.77614 1.21511 1.21569 1.20732 1.19046 0.90460 0.82329 1.43662 0.90506 1.44406 1.01971 0.99279 1.86869 1.21947 0.84435 0.91782 0.98741 1.23060 0.95446 0.98267 0.99853 1.22615 0.98171 0.90951 0.82056 1.86666 1.42942 1.75937 1.28890 1.22235 0.88282 0.93184 0.98134 1.45852 1.36390 1.28407 1.26228 1.16358 0.80800 0.79997 0.84089 1.90819 1.58820 1.67514 1.21506 1.27688 1.07575 1.04133 1.03442 1.82655 1.17559 1.27610 1.16186 1.78891 1.21797 1.07337 1.15139 1.70508 1.16540 1.24838 0.99527 1.21931 0.90380 0.91922 0.97162 1.20666 1.00445 1.00203 0.89808 1.23083 1.03270 0.90326 1.03163 1.23026 0.98451 1.01451 0.96281 1.21942 0.93578 0.87294 0.98333 0.93578 0.87363 0.96305 0.90440 0.90929 0.79198 0.89591 0.90039 0.76896 0.83656 0.87574 0.87837 0.87535 0.88529 0.95878 0.95128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.13 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.70 3.39 -170.07 -0.58 -15.28 16 10 C 0.16 3.67 5.88 -2.53 -0.01 3.65 16 11 C -0.13 -2.28 6.26 -24.58 -0.15 -2.44 16 12 C 0.10 1.63 0.92 -88.78 -0.08 1.54 16 13 O -0.54 -8.18 13.09 -35.23 -0.46 -8.64 16 14 C 0.10 1.36 4.74 -4.04 -0.02 1.34 16 15 N -0.72 -7.86 5.19 -61.46 -0.32 -8.18 16 16 C 0.60 7.27 7.80 -12.63 -0.10 7.17 16 17 O -0.51 -7.41 14.97 5.26 0.08 -7.33 16 18 C -0.29 -3.08 6.81 -35.95 -0.24 -3.32 16 19 S 0.42 3.65 23.05 -107.50 -2.48 1.17 16 20 N -0.25 -2.80 12.51 60.35 0.75 -2.04 16 21 N -0.25 -2.91 10.95 33.42 0.37 -2.54 16 22 C 0.13 1.48 6.59 -82.84 -0.55 0.94 16 23 C -0.09 -0.89 5.63 -91.77 -0.52 -1.40 16 24 C -0.16 -1.27 10.11 -26.70 -0.27 -1.54 16 25 C -0.15 -1.28 10.24 -26.70 -0.27 -1.55 16 26 C 0.12 2.18 6.29 -3.06 -0.02 2.16 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.11 2.86 5.87 -51.93 -0.31 2.56 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.36 3.88 7.79 45.56 0.35 4.23 16 33 H 0.09 1.18 8.06 -51.92 -0.42 0.76 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 3.54 6.70 -40.82 -0.27 3.27 16 36 H 0.15 1.54 6.64 -51.93 -0.34 1.19 16 37 H 0.11 0.89 7.80 -51.93 -0.41 0.48 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.02 0.42 8.07 -51.93 -0.42 0.01 16 42 H 0.03 0.57 7.76 -51.93 -0.40 0.17 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -32.43 362.89 -8.83 -41.27 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.71 Total: 5.31 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.49 Total: -0.07 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.78 Total: -53.72 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.38 Total: -15.97 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -2.48 Total: 1.17 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.43 -8.83 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672003190.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.217 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds