Wall clock time and date at job start Tue Mar 31 2020 20:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00210 * 2 1 4 4 H 1.48500 * 109.46982 * 270.00487 * 3 2 1 5 5 H 1.48502 * 109.47018 * 30.00331 * 3 2 1 6 6 H 1.48500 * 109.47166 * 150.00328 * 3 2 1 7 7 C 1.38817 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99325 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00546 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64538 * 359.95606 * 9 7 2 11 11 C 1.54900 * 104.83257 * 204.16357 * 10 9 7 12 12 C 1.55162 * 101.58452 * 322.99184 * 11 10 9 13 13 O 1.42901 * 110.87357 * 277.06963 * 12 11 10 14 14 C 1.53003 * 110.71862 * 153.86056 * 12 11 10 15 15 N 1.46499 * 109.46708 * 190.02491 * 14 12 11 16 16 C 1.34784 * 119.99893 * 180.02562 * 15 14 12 17 17 O 1.21619 * 119.99540 * 359.97438 * 16 15 14 18 18 C 1.47169 * 119.99864 * 179.72697 * 16 15 14 19 19 S 1.77333 * 128.47834 * 359.67631 * 18 16 15 20 20 N 1.56636 * 95.28421 * 179.97438 * 19 18 16 21 21 N 1.27335 * 109.73992 * 0.35031 * 20 19 18 22 22 C 1.31241 * 120.03631 * 359.72258 * 21 20 19 23 23 C 1.50701 * 124.05413 * 179.97438 * 22 21 20 24 24 C 1.53007 * 117.50050 * 8.61749 * 23 22 21 25 25 C 1.52995 * 59.99896 * 252.51137 * 24 23 22 26 26 C 1.47021 * 125.64900 * 179.97438 * 9 7 2 27 27 H 0.97002 * 120.00342 * 359.97438 * 1 2 3 28 28 H 1.08991 * 110.36964 * 323.00841 * 10 9 7 29 29 H 1.09008 * 110.36173 * 85.32869 * 10 9 7 30 30 H 1.09005 * 111.00528 * 204.92160 * 11 10 9 31 31 H 1.08999 * 111.00476 * 81.06855 * 11 10 9 32 32 H 0.96696 * 113.99608 * 177.45403 * 13 12 11 33 33 H 1.08998 * 109.46692 * 70.02993 * 14 12 11 34 34 H 1.08994 * 109.47584 * 310.02857 * 14 12 11 35 35 H 0.97005 * 120.00261 * 0.02562 * 15 14 12 36 36 H 1.09000 * 115.55081 * 154.32607 * 23 22 21 37 37 H 1.09002 * 117.49537 * 0.02562 * 24 23 22 38 38 H 1.09001 * 117.49475 * 145.01615 * 24 23 22 39 39 H 1.09001 * 117.49702 * 252.50513 * 25 24 23 40 40 H 1.09006 * 117.49604 * 107.49517 * 25 24 23 41 41 H 1.08997 * 109.88229 * 59.49421 * 26 9 7 42 42 H 1.08995 * 109.88161 * 298.32255 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 0.0009 11 6 -0.4012 -3.9321 0.6133 12 6 0.7783 -4.7525 0.0273 13 8 0.4750 -5.2089 -1.2925 14 6 1.1239 -5.9312 0.9396 15 7 2.3792 -6.5414 0.4945 16 6 2.8824 -7.6043 1.1531 17 8 2.2946 -8.0564 2.1170 18 6 4.1404 -8.2210 0.7024 19 16 5.1660 -7.7600 -0.6689 20 7 6.2358 -8.8792 -0.4316 21 7 5.9053 -9.5832 0.5767 22 6 4.8074 -9.3058 1.2401 23 6 4.3308 -10.0777 2.4435 24 6 5.2804 -11.1217 3.0347 25 6 4.0407 -11.5684 2.2571 26 6 1.9317 -3.7275 -0.0016 27 1 -0.4851 0.8400 0.0004 28 1 -0.5988 -1.7587 0.6167 29 1 -0.5283 -2.4871 -1.0172 30 1 -1.3589 -4.3327 0.2807 31 1 -0.3505 -3.8978 1.7016 32 1 1.1963 -5.6935 -1.7165 33 1 0.3246 -6.6710 0.8957 34 1 1.2353 -5.5770 1.9643 35 1 2.8482 -6.1805 -0.2741 36 1 3.6966 -9.5243 3.1361 37 1 6.2500 -11.2499 2.5535 38 1 5.2711 -11.2551 4.1165 39 1 3.2159 -11.9958 2.8274 40 1 4.1947 -11.9908 1.2641 41 1 2.5593 -3.8511 0.8810 42 1 2.5269 -3.8643 -0.9044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672003191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:54 Heat of formation + Delta-G solvation = 48.305677 kcal Electronic energy + Delta-G solvation = -26767.287224 eV Core-core repulsion = 22877.110568 eV Total energy + Delta-G solvation = -3890.176656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.41951 -40.00154 -38.54234 -37.29451 -35.26201 -34.44335 -32.38890 -32.05748 -29.78772 -28.70654 -27.51813 -25.86041 -24.37701 -23.45056 -22.66230 -22.23758 -20.91835 -20.16384 -19.99862 -18.45850 -18.16227 -17.02778 -16.53435 -16.31846 -16.21408 -15.73287 -15.34623 -14.84752 -14.78586 -14.46503 -14.29305 -13.86472 -13.43002 -13.35186 -13.06424 -12.57979 -12.44163 -12.21311 -12.18752 -11.84148 -11.67066 -11.53224 -11.10970 -10.93553 -10.87898 -10.79284 -10.69872 -10.46875 -10.30711 -10.20178 -10.18885 -9.97724 -9.79390 -9.76429 -9.53147 -9.34658 -8.71499 -6.93399 -5.72775 -3.15485 -0.62132 0.44413 1.10961 1.53855 2.65718 2.68555 3.35445 3.39820 3.40358 3.42461 3.64876 4.03320 4.30571 4.36608 4.42331 4.58000 4.68340 4.72331 4.75600 5.05762 5.25827 5.26957 5.35510 5.41873 5.52680 5.56777 5.72649 5.80309 5.83828 5.89022 6.03934 6.14689 6.29743 6.40668 6.49192 6.51961 7.01432 7.30476 7.49193 7.53822 7.73750 7.77519 7.82593 8.27473 9.13457 9.73843 10.37426 11.31004 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.002666 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.104645 B =10499.343595 C =11181.311690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.916 3.084 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.156 3.844 11 C -0.127 4.127 12 C 0.104 3.896 13 O -0.541 6.541 14 C 0.105 3.895 15 N -0.717 5.717 16 C 0.604 3.396 17 O -0.511 6.511 18 C -0.288 4.288 19 S 0.424 5.576 20 N -0.251 5.251 21 N -0.249 5.249 22 C 0.132 3.868 23 C -0.089 4.089 24 C -0.161 4.161 25 C -0.154 4.154 26 C 0.114 3.886 27 H 0.253 0.747 28 H 0.109 0.891 29 H 0.019 0.981 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.364 0.636 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.398 0.602 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.031 0.969 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.828 -20.100 1.698 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.166 4.166 12 C 0.062 3.938 13 O -0.346 6.346 14 C -0.019 4.019 15 N -0.369 5.369 16 C 0.387 3.613 17 O -0.387 6.387 18 C -0.428 4.428 19 S 0.561 5.439 20 N -0.232 5.232 21 N -0.114 5.114 22 C -0.014 4.014 23 C -0.111 4.111 24 C -0.198 4.198 25 C -0.192 4.192 26 C -0.013 4.013 27 H 0.064 0.936 28 H 0.126 0.874 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.210 0.790 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.233 0.767 36 H 0.164 0.836 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.049 0.951 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.191 -19.699 1.124 21.001 hybrid contribution 0.505 0.517 0.364 0.809 sum 7.696 -19.182 1.488 20.722 Atomic orbital electron populations 1.69783 1.04915 1.24964 1.57125 1.24799 0.95742 0.97788 1.02109 0.86061 0.78522 0.83208 0.77611 1.21558 1.21560 1.20676 1.19046 0.90455 0.82326 1.43711 0.90504 1.44398 1.01976 0.99247 1.86863 1.21955 0.84424 0.91794 0.98730 1.23063 0.95485 0.98238 0.99822 1.22598 0.98155 0.90926 0.82120 1.86647 1.43042 1.76056 1.28812 1.22243 0.84380 0.95521 0.99727 1.45907 1.26207 1.31450 1.33359 1.16371 0.81930 0.79998 0.82993 1.90815 1.59223 1.62333 1.26375 1.27689 1.05105 1.05040 1.05008 1.82684 1.08552 1.30426 1.22250 1.78886 1.22723 1.07140 1.14446 1.70512 1.15631 1.22591 1.02697 1.21927 0.89099 0.93230 0.97177 1.20665 1.04786 0.90907 0.94731 1.23074 0.95522 1.00948 1.00288 1.23009 1.00122 0.93679 1.02423 1.21937 0.93678 0.87390 0.98258 0.93573 0.87351 0.96290 0.90925 0.90460 0.78997 0.89997 0.89616 0.76713 0.83642 0.87560 0.87822 0.87574 0.88584 0.95143 0.95879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.19 10.09 55.49 0.56 -25.63 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.23 -6.12 10.27 -15.06 -0.15 -6.27 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.60 -14.64 3.39 -170.08 -0.58 -15.22 16 10 C 0.16 3.66 5.88 -2.53 -0.01 3.65 16 11 C -0.13 -2.28 6.26 -24.58 -0.15 -2.43 16 12 C 0.10 1.62 0.93 -88.78 -0.08 1.54 16 13 O -0.54 -8.24 13.10 -35.23 -0.46 -8.70 16 14 C 0.10 1.35 4.80 -4.04 -0.02 1.33 16 15 N -0.72 -7.99 5.13 -61.47 -0.32 -8.31 16 16 C 0.60 7.34 7.80 -12.63 -0.10 7.24 16 17 O -0.51 -7.45 14.97 5.26 0.08 -7.37 16 18 C -0.29 -3.13 6.81 -35.96 -0.24 -3.37 16 19 S 0.42 3.77 23.05 -107.50 -2.48 1.29 16 20 N -0.25 -2.85 12.51 60.35 0.75 -2.10 16 21 N -0.25 -2.95 10.95 33.42 0.37 -2.58 16 22 C 0.13 1.50 6.59 -82.84 -0.55 0.95 16 23 C -0.09 -0.89 5.63 -91.77 -0.52 -1.41 16 24 C -0.16 -1.29 10.11 -26.73 -0.27 -1.56 16 25 C -0.15 -1.25 10.23 -26.73 -0.27 -1.53 16 26 C 0.11 2.14 5.76 -3.06 -0.02 2.12 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.11 2.86 5.87 -51.93 -0.31 2.56 16 29 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.30 7.96 -51.93 -0.41 0.89 16 32 H 0.36 3.95 8.44 45.56 0.38 4.34 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.17 8.03 -51.93 -0.42 0.76 16 35 H 0.40 3.72 6.90 -40.82 -0.28 3.44 16 36 H 0.15 1.57 6.65 -51.93 -0.35 1.22 16 37 H 0.11 0.91 7.80 -51.93 -0.40 0.50 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.57 7.82 -51.93 -0.41 0.16 16 42 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -32.31 363.16 -8.80 -41.11 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.69 Total: 5.59 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.49 Total: -0.06 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.79 Total: -53.83 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.38 Total: -16.08 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.48 Total: 1.29 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.31 -8.80 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672003191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.417 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds