Wall clock time and date at job start Tue Mar 31 2020 20:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 119.99877 * 2 1 4 4 H 1.48496 * 109.47422 * 240.00462 * 3 2 1 5 5 H 1.48504 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46954 * 120.00220 * 3 2 1 7 7 C 1.38949 * 120.00514 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00250 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99720 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00232 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47120 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99748 * 179.97438 * 13 12 10 15 15 O 1.21652 * 120.00116 * 359.97438 * 14 13 12 16 16 C 1.47163 * 119.99812 * 180.02562 * 14 13 12 17 17 C 1.35052 * 122.47745 * 180.02562 * 16 14 13 18 18 S 1.76185 * 108.25765 * 179.73499 * 17 16 14 19 19 C 1.76050 * 90.17410 * 0.24243 * 18 17 16 20 20 N 1.38464 * 125.18464 * 179.97438 * 19 18 17 21 21 C 1.46848 * 111.00128 * 124.23636 * 20 19 18 22 22 C 1.53039 * 109.52363 * 174.16008 * 21 20 19 23 23 C 1.53119 * 109.27913 * 59.17715 * 22 21 20 24 24 C 1.53116 * 109.16117 * 302.34773 * 23 22 21 25 25 C 1.46845 * 111.00065 * 0.02562 * 20 19 18 26 26 N 1.29438 * 109.63104 * 0.02562 * 19 18 17 27 27 H 0.96997 * 120.00700 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99666 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47022 * 59.99909 * 12 10 9 30 30 H 1.09007 * 109.47185 * 299.99837 * 12 10 9 31 31 H 0.96997 * 120.00066 * 359.97438 * 13 12 10 32 32 H 1.08002 * 125.87374 * 0.02562 * 17 16 14 33 33 H 1.09003 * 109.45826 * 294.17326 * 21 20 19 34 34 H 1.08993 * 109.45982 * 54.14455 * 21 20 19 35 35 H 1.09003 * 109.50562 * 299.23949 * 22 21 20 36 36 H 1.09003 * 109.50345 * 179.11687 * 22 21 20 37 37 H 1.09001 * 109.52474 * 182.43971 * 23 22 21 38 38 H 1.09006 * 109.57185 * 62.28500 * 23 22 21 39 39 H 1.09004 * 109.50151 * 297.70831 * 24 23 22 40 40 H 1.09002 * 109.53511 * 177.61510 * 24 23 22 41 41 H 1.08994 * 109.46860 * 305.85666 * 25 20 19 42 42 H 1.09002 * 109.46291 * 65.83707 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1961 -5.9764 -0.0027 14 6 1.7468 -7.2471 -0.0027 15 8 0.5508 -7.4694 -0.0019 16 6 2.7032 -8.3656 -0.0026 17 6 2.3085 -9.6572 -0.0032 18 16 3.7474 -10.6740 -0.0106 19 6 4.7678 -9.2394 -0.0049 20 7 6.1524 -9.2451 -0.0066 21 6 6.6805 -8.4706 -1.1369 22 6 8.2040 -8.3768 -1.0252 23 6 8.7988 -9.7878 -1.0269 24 6 8.1961 -10.5886 0.1307 25 6 6.6729 -10.6182 -0.0145 26 7 4.0264 -8.1784 0.0022 27 1 -0.4851 0.8400 0.0004 28 1 0.3535 -2.3906 0.0002 29 1 0.6170 -4.9201 -0.8919 30 1 0.6176 -4.9213 0.8881 31 1 3.1497 -5.7991 -0.0030 32 1 1.2867 -10.0067 -0.0041 33 1 6.4146 -8.9645 -2.0714 34 1 6.2529 -7.4682 -1.1215 35 1 8.4705 -7.8707 -0.0973 36 1 8.5971 -7.8152 -1.8727 37 1 9.8802 -9.7274 -0.9040 38 1 8.5665 -10.2809 -1.9709 39 1 8.4625 -10.1172 1.0768 40 1 8.5836 -11.6072 0.1098 41 1 6.2399 -11.1757 0.8160 42 1 6.4072 -11.1020 -0.9544 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890907430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:37 Heat of formation + Delta-G solvation = -26.815571 kcal Electronic energy + Delta-G solvation = -26011.764064 eV Core-core repulsion = 22118.329907 eV Total energy + Delta-G solvation = -3893.434157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59909 -39.67011 -38.45745 -37.73852 -34.45012 -34.08720 -33.64708 -31.46370 -31.34921 -29.86969 -28.07688 -25.84460 -24.86790 -23.84762 -23.65773 -21.46240 -20.34324 -19.68015 -19.34567 -18.84748 -18.03153 -17.08774 -16.59706 -15.81816 -15.61795 -15.37668 -15.21370 -15.10832 -14.89640 -14.57988 -14.29881 -14.07222 -13.95234 -13.86149 -13.49248 -13.27548 -13.23510 -12.67940 -12.16272 -12.10944 -11.91490 -11.71717 -11.60375 -11.29401 -11.08104 -11.07734 -10.94125 -10.49879 -10.48158 -10.29058 -10.05468 -9.83260 -9.59417 -9.47044 -8.80689 -8.59048 -8.38636 -8.06724 -6.48261 -3.90106 0.37247 0.84723 1.30205 1.93833 2.81670 3.16249 3.23458 3.26748 3.42949 3.47903 3.78059 4.12368 4.16155 4.30675 4.39654 4.47460 4.67858 4.79555 4.90450 4.96351 5.04056 5.06684 5.19528 5.19949 5.21720 5.34648 5.39834 5.46315 5.61756 5.68357 5.78147 5.91065 5.92967 5.97300 6.10060 6.16468 6.40737 6.66572 7.35679 7.49034 7.87160 7.94969 8.39327 8.49372 9.07878 9.42510 9.90963 10.68685 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.002460 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.042251 B =11378.696465 C =13239.441235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.550 5.550 10 C 0.429 3.571 11 O -0.593 6.593 12 C 0.107 3.893 13 N -0.685 5.685 14 C 0.588 3.412 15 O -0.543 6.543 16 C 0.044 3.956 17 C -0.186 4.186 18 S 0.054 5.946 19 C 0.268 3.732 20 N -0.435 5.435 21 C 0.059 3.941 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.114 4.114 25 C 0.044 3.956 26 N -0.469 5.469 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.421 0.579 32 H 0.191 0.809 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.675 -24.021 -1.963 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.214 3.786 11 O -0.479 6.479 12 C -0.021 4.021 13 N -0.338 5.338 14 C 0.371 3.629 15 O -0.422 6.422 16 C -0.088 4.088 17 C -0.328 4.328 18 S 0.304 5.696 19 C -0.105 4.105 20 N -0.156 5.156 21 C -0.068 4.068 22 C -0.157 4.157 23 C -0.163 4.163 24 C -0.152 4.152 25 C -0.084 4.084 26 N -0.189 5.189 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.261 0.739 32 H 0.208 0.792 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.132 -24.268 -1.540 27.636 hybrid contribution -0.713 1.229 -0.472 1.497 sum 12.420 -23.039 -2.012 26.251 Atomic orbital electron populations 1.69602 1.05995 1.28587 1.49418 1.25315 0.95663 0.99894 0.96851 0.85875 0.78771 0.80176 0.79155 1.19787 1.20879 1.19779 1.19683 0.93445 0.81998 1.48240 0.87725 1.41778 1.09453 1.04411 1.62844 1.19711 0.88326 0.84936 0.85619 1.90518 1.13627 1.86738 1.56980 1.21036 0.91836 0.85737 1.03473 1.45560 1.12436 1.03991 1.71848 1.17032 0.86634 0.81935 0.77338 1.90811 1.14990 1.84746 1.51650 1.20104 0.88759 0.93627 1.06290 1.26878 1.03277 0.94527 1.08165 1.85050 0.98865 1.13264 1.72428 1.25994 0.93395 0.89987 1.01109 1.58290 0.99542 1.15054 1.42680 1.22397 0.96116 0.99297 0.88990 1.21662 0.93132 0.97302 1.03648 1.21650 1.00522 0.95766 0.98382 1.21587 0.92322 1.01104 1.00200 1.22456 0.97449 0.86103 1.02376 1.66661 1.03468 1.29316 1.19475 0.91570 0.77038 0.89538 0.89534 0.73912 0.79234 0.93231 0.88118 0.90321 0.90327 0.91071 0.91896 0.90349 0.90448 0.89404 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.90 5.29 -10.97 -0.06 -13.96 16 10 C 0.43 10.17 7.85 -10.99 -0.09 10.08 16 11 O -0.59 -15.76 15.24 5.55 0.08 -15.68 16 12 C 0.11 2.07 6.15 -5.19 -0.03 2.04 16 13 N -0.69 -12.83 5.52 -62.64 -0.35 -13.18 16 14 C 0.59 10.44 7.79 -12.64 -0.10 10.34 16 15 O -0.54 -10.54 16.66 5.23 0.09 -10.45 16 16 C 0.04 0.67 6.67 -84.59 -0.56 0.11 16 17 C -0.19 -2.30 10.83 29.60 0.32 -1.98 16 18 S 0.05 0.52 21.49 -107.50 -2.31 -1.79 16 19 C 0.27 3.21 6.96 -88.02 -0.61 2.60 16 20 N -0.44 -4.35 4.72 -173.92 -0.82 -5.17 16 21 C 0.06 0.55 5.38 -3.83 -0.02 0.53 16 22 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 23 C -0.13 -0.67 6.00 -26.61 -0.16 -0.83 16 24 C -0.11 -0.61 6.09 -26.65 -0.16 -0.77 16 25 C 0.04 0.30 4.52 -3.83 -0.02 0.28 16 26 N -0.47 -6.96 9.64 -10.59 -0.10 -7.06 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.40 9.58 7.90 -40.82 -0.32 9.26 16 29 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 31 H 0.42 8.23 6.91 -40.82 -0.28 7.94 16 32 H 0.19 2.06 8.01 -52.49 -0.42 1.64 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 1.15 7.82 -51.93 -0.41 0.75 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.57 7.48 -51.93 -0.39 0.18 16 42 H 0.06 0.35 8.04 -51.93 -0.42 -0.07 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -32.12 366.90 -9.62 -41.74 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -5.55 Total: 14.26 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -1.84 Total: 13.43 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.60 Total: -62.82 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: 0.17 Total: -26.13 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -2.31 Total: -1.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.12 -9.62 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890907430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.928 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds