Wall clock time and date at job start Tue Mar 31 2020 21:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37927 * 119.93163 * 2 1 4 4 C 1.39595 * 119.86010 * 180.27786 * 3 2 1 5 5 C 1.47791 * 120.12805 * 179.72745 * 4 3 2 6 6 O 1.21561 * 120.00005 * 359.72099 * 5 4 3 7 7 N 1.34776 * 120.00005 * 179.44836 * 5 4 3 8 8 C 1.46501 * 120.00031 * 180.27168 * 7 5 4 9 9 C 1.52997 * 109.47299 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.67944 * 300.77043 * 9 8 7 11 11 C 1.53296 * 109.68301 * 180.25013 * 9 8 7 12 12 O 1.42959 * 109.22109 * 187.97614 * 11 9 8 13 13 C 1.42957 * 114.16644 * 62.58357 * 12 11 9 14 14 C 1.53291 * 109.22517 * 297.41570 * 13 12 11 15 15 N 1.47156 * 109.67895 * 61.28554 * 9 8 7 16 16 C 1.36935 * 120.98518 * 350.23941 * 15 9 8 17 17 H 1.08006 * 119.99922 * 31.03566 * 16 15 9 18 18 C 1.38804 * 120.00133 * 211.04140 * 16 15 9 19 19 N 1.31617 * 120.00116 * 10.79519 * 18 16 15 20 20 Si 1.86804 * 120.00160 * 190.78649 * 18 16 15 21 21 H 1.48501 * 109.46721 * 90.00196 * 20 18 16 22 22 H 1.48500 * 109.47217 * 209.99978 * 20 18 16 23 23 H 1.48495 * 109.47277 * 330.00373 * 20 18 16 24 24 C 1.39635 * 119.74374 * 359.45206 * 4 3 2 25 25 C 1.37874 * 119.86467 * 0.25050 * 24 4 3 26 26 C 1.38490 * 119.93803 * 179.70690 * 2 1 3 27 27 Cl 1.73600 * 119.86341 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.46716 * 270.30106 * 1 2 3 29 29 H 1.09000 * 109.47386 * 30.29263 * 1 2 3 30 30 H 1.09000 * 109.47263 * 150.30209 * 1 2 3 31 31 H 1.07997 * 120.06933 * 359.97438 * 3 2 1 32 32 H 0.96999 * 120.00155 * 0.27337 * 7 5 4 33 33 H 1.09001 * 109.47347 * 300.00368 * 8 7 5 34 34 H 1.09005 * 109.46716 * 59.99741 * 8 7 5 35 35 H 1.08998 * 109.51454 * 307.90349 * 11 9 8 36 36 H 1.08997 * 109.50814 * 68.00056 * 11 9 8 37 37 H 1.08997 * 109.51583 * 57.34148 * 13 12 11 38 38 H 1.09005 * 109.51175 * 177.49279 * 13 12 11 39 39 H 1.08997 * 109.68568 * 172.02463 * 14 13 12 40 40 H 1.08996 * 109.68388 * 292.58157 * 14 13 12 41 41 H 0.96998 * 120.00406 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.06643 * 180.23111 * 24 4 3 43 43 H 1.07994 * 119.93800 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1953 0.0000 4 6 3.5911 1.1936 -0.0059 5 6 4.3345 2.4709 -0.0120 6 8 3.7304 3.5257 -0.0170 7 7 5.6822 2.4663 -0.0064 8 6 6.4191 3.7325 -0.0065 9 6 7.9224 3.4478 0.0011 10 1 8.1813 2.8659 0.8857 11 6 8.6982 4.7699 0.0074 12 8 10.0904 4.4994 -0.1730 13 6 10.4098 3.8838 -1.4230 14 6 9.7217 2.5163 -1.5026 15 7 8.2908 2.6982 -1.2105 16 6 7.3308 2.1858 -2.0417 17 1 6.3813 2.6900 -2.1455 18 6 7.5779 1.0184 -2.7507 19 7 8.6378 0.2901 -2.4706 20 14 6.4060 0.4808 -4.1025 21 1 6.8418 1.0647 -5.3965 22 1 6.4107 -1.0009 -4.2014 23 1 5.0340 0.9513 -3.7842 24 6 4.2824 -0.0197 -0.0001 25 6 3.5835 -1.2081 0.0061 26 6 2.1981 -1.2001 0.0061 27 17 1.3249 -2.7005 0.0131 28 1 -0.3633 0.0054 1.0277 29 1 -0.3634 0.8873 -0.5184 30 1 -0.3634 -0.8927 -0.5091 31 1 1.6552 2.1306 -0.0004 32 1 6.1644 1.6246 -0.0024 33 1 6.1614 4.3028 -0.8989 34 1 6.1540 4.3071 0.8811 35 1 8.3425 5.4047 -0.8041 36 1 8.5455 5.2770 0.9600 37 1 10.0604 4.5153 -2.2397 38 1 11.4893 3.7531 -1.4991 39 1 9.8423 2.1023 -2.5037 40 1 10.1623 1.8404 -0.7698 41 1 8.8103 -0.5260 -2.9658 42 1 5.3624 -0.0271 -0.0008 43 1 4.1169 -2.1471 0.0110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051092914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:13 Heat of formation + Delta-G solvation = -37.281157 kcal Electronic energy + Delta-G solvation = -27651.637248 eV Core-core repulsion = 23723.412811 eV Total energy + Delta-G solvation = -3928.224437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.08236 -38.83064 -38.11188 -36.47809 -35.39527 -33.74980 -33.01485 -31.63069 -30.88402 -30.37019 -27.36902 -27.01142 -25.71880 -23.53136 -23.33441 -22.03134 -21.67285 -19.89958 -19.58480 -17.66884 -16.76911 -16.35708 -16.07575 -15.87869 -15.47120 -14.80624 -14.72376 -14.50518 -14.41956 -14.18858 -13.90290 -13.74332 -13.55505 -13.28130 -12.93337 -12.66327 -12.53946 -12.48958 -12.03211 -11.98166 -11.62878 -11.48632 -11.36600 -11.08179 -10.94582 -10.83077 -10.77235 -10.46309 -10.28571 -10.10835 -9.73271 -9.61221 -9.03579 -8.93622 -8.77785 -8.68549 -8.33426 -6.80172 -5.97185 -3.47463 0.75436 1.25094 2.00520 2.99956 3.24698 3.33442 3.36273 3.60860 3.93149 4.28951 4.48674 4.63639 4.70444 4.96542 5.09865 5.18256 5.20728 5.24004 5.44104 5.48027 5.51853 5.55263 5.67360 5.78964 5.80577 5.94646 5.98391 6.02845 6.11312 6.15328 6.18981 6.22776 6.28553 6.35351 6.47486 6.68541 6.69160 6.98099 7.02174 7.43905 7.64185 7.82177 8.07687 8.22439 8.66739 8.99247 9.59346 10.18486 11.08859 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.003704 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.659269 B = 7558.297591 C = 8678.535147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.091 4.091 3 C -0.054 4.054 4 C -0.115 4.115 5 C 0.551 3.449 6 O -0.557 6.557 7 N -0.686 5.686 8 C 0.135 3.865 9 C 0.124 3.876 10 H 0.042 0.958 11 C 0.056 3.944 12 O -0.392 6.392 13 C 0.034 3.966 14 C 0.144 3.856 15 N -0.592 5.592 16 C -0.257 4.257 17 H 0.073 0.927 18 C 0.013 3.987 19 N -0.898 5.898 20 Si 0.890 3.110 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.072 4.072 25 C -0.113 4.113 26 C -0.020 4.020 27 Cl -0.071 7.071 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.415 0.585 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.030 0.970 41 H 0.256 0.744 42 H 0.144 0.856 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.924 -1.372 5.865 10.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.091 4.091 3 C -0.073 4.073 4 C -0.118 4.118 5 C 0.337 3.663 6 O -0.438 6.438 7 N -0.337 5.337 8 C 0.011 3.989 9 C 0.017 3.983 10 H 0.060 0.940 11 C -0.023 4.023 12 O -0.311 6.311 13 C -0.043 4.043 14 C 0.018 3.982 15 N -0.318 5.318 16 C -0.387 4.387 17 H 0.091 0.909 18 C -0.187 4.187 19 N -0.542 5.542 20 Si 0.720 3.280 21 H -0.213 1.213 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.091 4.091 25 C -0.132 4.132 26 C -0.046 4.046 27 Cl -0.042 7.042 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.161 0.839 32 H 0.254 0.746 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.162 0.838 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.195 -0.886 5.919 10.971 hybrid contribution -0.401 -1.112 -1.164 1.658 sum -9.595 -1.998 4.755 10.894 Atomic orbital electron populations 1.20847 0.90021 1.03522 1.02877 1.19678 0.96876 0.91052 1.01542 1.21084 0.92716 0.97668 0.95839 1.20161 0.94230 0.93704 1.03734 1.18089 0.82618 0.88269 0.77294 1.90716 1.68861 1.32334 1.51898 1.45939 1.05163 1.11086 1.71558 1.21216 0.90780 0.85697 1.01217 1.21439 0.91587 0.93428 0.91807 0.94038 1.22856 0.82544 0.96335 1.00569 1.87803 1.23651 1.81088 1.38513 1.23355 0.99311 0.96680 0.84996 1.21423 0.83047 0.91342 1.02345 1.44102 1.02039 1.63415 1.22201 1.19238 0.97042 1.03247 1.19129 0.90905 1.25106 0.97720 0.95652 1.00241 1.69972 1.27964 1.14947 1.41296 0.86462 0.81108 0.77846 0.82634 1.21251 1.21390 1.20051 1.21477 1.01001 0.90862 0.95737 1.21001 0.91690 0.99436 1.01065 1.21010 0.92398 0.86571 1.04671 1.98349 1.76631 1.32445 1.96763 0.90687 0.90914 0.90866 0.83893 0.74610 0.91219 0.92035 0.93463 0.89858 0.94104 0.90212 0.88930 0.95221 0.93365 0.83796 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.61 36.01 0.35 -0.80 16 2 C -0.09 -1.17 5.88 -104.64 -0.62 -1.78 16 3 C -0.05 -0.78 9.24 -39.19 -0.36 -1.15 16 4 C -0.12 -1.88 5.87 -104.96 -0.62 -2.49 16 5 C 0.55 10.20 7.77 -12.35 -0.10 10.11 16 6 O -0.56 -11.53 16.35 5.31 0.09 -11.44 16 7 N -0.69 -12.55 3.75 -61.27 -0.23 -12.78 16 8 C 0.14 2.41 4.44 -4.04 -0.02 2.39 16 9 C 0.12 2.34 3.20 -67.42 -0.22 2.12 16 10 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 11 C 0.06 0.96 6.29 37.31 0.23 1.19 16 12 O -0.39 -7.41 10.74 -35.23 -0.38 -7.79 16 13 C 0.03 0.65 6.98 37.31 0.26 0.91 16 14 C 0.14 3.16 5.38 -3.53 -0.02 3.14 16 15 N -0.59 -13.13 3.03 -164.29 -0.50 -13.63 16 16 C -0.26 -6.15 7.11 -15.06 -0.11 -6.25 16 17 H 0.07 1.79 5.81 -52.48 -0.30 1.49 16 18 C 0.01 0.32 5.06 -17.43 -0.09 0.23 16 19 N -0.90 -23.33 11.13 55.49 0.62 -22.71 16 20 Si 0.89 20.44 29.57 -169.99 -5.03 15.41 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.07 -1.09 9.54 -39.19 -0.37 -1.47 16 25 C -0.11 -1.55 9.81 -39.61 -0.39 -1.94 16 26 C -0.02 -0.26 6.32 -39.38 -0.25 -0.51 16 27 Cl -0.07 -0.81 27.27 -51.86 -1.41 -2.23 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.07 0.69 6.89 -51.93 -0.36 0.33 16 31 H 0.14 1.99 7.65 -52.49 -0.40 1.59 16 32 H 0.41 7.76 5.41 -40.82 -0.22 7.54 16 33 H 0.07 1.36 7.53 -51.93 -0.39 0.96 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.09 2.25 6.32 -51.93 -0.33 1.92 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 42 H 0.14 2.21 6.40 -52.49 -0.34 1.88 16 43 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 361.25 15.07 5.44 5.44 Total: -1.00 -27.93 361.25 -9.41 -37.34 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.70 Total: 8.69 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.31 Total: 3.70 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.11 Total: -49.12 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.29 Total: -19.23 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.41 Total: -2.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.93 -9.41 -37.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051092914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.054 kcal (2) G-P(sol) polarization free energy of solvation -27.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds