Wall clock time and date at job start Tue Mar 31 2020 21:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37927 * 119.93163 * 2 1 4 4 C 1.39595 * 119.86010 * 180.27786 * 3 2 1 5 5 C 1.47791 * 120.12805 * 179.72745 * 4 3 2 6 6 O 1.21561 * 120.00005 * 359.72099 * 5 4 3 7 7 N 1.34776 * 120.00005 * 179.44836 * 5 4 3 8 8 C 1.46501 * 120.00031 * 180.27168 * 7 5 4 9 9 C 1.52997 * 109.47299 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.67944 * 300.77043 * 9 8 7 11 11 C 1.53296 * 109.68301 * 180.25013 * 9 8 7 12 12 O 1.42959 * 109.22109 * 187.97614 * 11 9 8 13 13 C 1.42957 * 114.16644 * 62.58357 * 12 11 9 14 14 C 1.53291 * 109.22517 * 297.41570 * 13 12 11 15 15 N 1.47156 * 109.67895 * 61.28554 * 9 8 7 16 16 C 1.36935 * 120.98518 * 350.23941 * 15 9 8 17 17 H 1.08006 * 119.99922 * 31.03566 * 16 15 9 18 18 C 1.38804 * 120.00133 * 211.04140 * 16 15 9 19 19 N 1.31617 * 120.00116 * 10.79519 * 18 16 15 20 20 Si 1.86804 * 120.00160 * 190.78649 * 18 16 15 21 21 H 1.48501 * 109.46721 * 90.00196 * 20 18 16 22 22 H 1.48500 * 109.47217 * 209.99978 * 20 18 16 23 23 H 1.48495 * 109.47277 * 330.00373 * 20 18 16 24 24 C 1.39635 * 119.74374 * 359.45206 * 4 3 2 25 25 C 1.37874 * 119.86467 * 0.25050 * 24 4 3 26 26 C 1.38490 * 119.93803 * 179.70690 * 2 1 3 27 27 Cl 1.73600 * 119.86341 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.46716 * 270.30106 * 1 2 3 29 29 H 1.09000 * 109.47386 * 30.29263 * 1 2 3 30 30 H 1.09000 * 109.47263 * 150.30209 * 1 2 3 31 31 H 1.07997 * 120.06933 * 359.97438 * 3 2 1 32 32 H 0.96999 * 120.00155 * 0.27337 * 7 5 4 33 33 H 1.09001 * 109.47347 * 300.00368 * 8 7 5 34 34 H 1.09005 * 109.46716 * 59.99741 * 8 7 5 35 35 H 1.08998 * 109.51454 * 307.90349 * 11 9 8 36 36 H 1.08997 * 109.50814 * 68.00056 * 11 9 8 37 37 H 1.08997 * 109.51583 * 57.34148 * 13 12 11 38 38 H 1.09005 * 109.51175 * 177.49279 * 13 12 11 39 39 H 1.08997 * 109.68568 * 172.02463 * 14 13 12 40 40 H 1.08996 * 109.68388 * 292.58157 * 14 13 12 41 41 H 0.96998 * 120.00406 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.06643 * 180.23111 * 24 4 3 43 43 H 1.07994 * 119.93800 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1953 0.0000 4 6 3.5911 1.1936 -0.0059 5 6 4.3345 2.4709 -0.0120 6 8 3.7304 3.5257 -0.0170 7 7 5.6822 2.4663 -0.0064 8 6 6.4191 3.7325 -0.0065 9 6 7.9224 3.4478 0.0011 10 1 8.1813 2.8659 0.8857 11 6 8.6982 4.7699 0.0074 12 8 10.0904 4.4994 -0.1730 13 6 10.4098 3.8838 -1.4230 14 6 9.7217 2.5163 -1.5026 15 7 8.2908 2.6982 -1.2105 16 6 7.3308 2.1858 -2.0417 17 1 6.3813 2.6900 -2.1455 18 6 7.5779 1.0184 -2.7507 19 7 8.6378 0.2901 -2.4706 20 14 6.4060 0.4808 -4.1025 21 1 6.8418 1.0647 -5.3965 22 1 6.4107 -1.0009 -4.2014 23 1 5.0340 0.9513 -3.7842 24 6 4.2824 -0.0197 -0.0001 25 6 3.5835 -1.2081 0.0061 26 6 2.1981 -1.2001 0.0061 27 17 1.3249 -2.7005 0.0131 28 1 -0.3633 0.0054 1.0277 29 1 -0.3634 0.8873 -0.5184 30 1 -0.3634 -0.8927 -0.5091 31 1 1.6552 2.1306 -0.0004 32 1 6.1644 1.6246 -0.0024 33 1 6.1614 4.3028 -0.8989 34 1 6.1540 4.3071 0.8811 35 1 8.3425 5.4047 -0.8041 36 1 8.5455 5.2770 0.9600 37 1 10.0604 4.5153 -2.2397 38 1 11.4893 3.7531 -1.4991 39 1 9.8423 2.1023 -2.5037 40 1 10.1623 1.8404 -0.7698 41 1 8.8103 -0.5260 -2.9658 42 1 5.3624 -0.0271 -0.0008 43 1 4.1169 -2.1471 0.0110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051092914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:13 Heat of formation + Delta-G solvation = -52.624550 kcal Electronic energy + Delta-G solvation = -27652.302588 eV Core-core repulsion = 23723.412811 eV Total energy + Delta-G solvation = -3928.889776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38691 -40.24516 -39.49177 -37.49541 -36.96500 -35.39083 -34.15938 -33.17766 -32.31161 -31.78905 -29.02863 -28.08063 -27.11627 -25.25859 -24.64153 -23.20481 -23.12662 -21.45528 -21.03431 -19.07983 -18.25920 -17.69236 -17.59977 -17.30558 -16.81920 -16.27758 -16.18391 -16.09885 -15.65420 -15.56409 -15.36580 -15.03481 -14.97943 -14.70847 -14.43787 -14.09234 -13.59552 -13.46856 -13.37955 -13.14680 -13.03916 -12.91420 -12.76171 -12.53102 -12.47586 -12.43255 -12.14304 -12.00417 -11.86174 -11.78666 -11.31981 -11.09476 -10.65129 -10.57097 -10.08437 -9.95542 -9.68268 -8.62953 -7.88130 -5.38801 -0.41568 0.15788 0.98020 1.38128 1.45082 1.49283 1.71206 2.22075 2.43654 2.67576 3.03824 3.27796 3.43418 3.61508 3.68645 3.70380 4.00921 4.09688 4.14902 4.21998 4.32580 4.41190 4.48137 4.57221 4.61697 4.64198 4.66735 4.74126 4.75789 4.78600 5.00184 5.03651 5.11606 5.13970 5.16364 5.24779 5.30525 5.48843 5.61383 5.64244 5.68659 6.29899 6.37040 6.60146 7.10356 7.20173 7.75686 8.31913 9.15963 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.003704 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.659269 B = 7558.297591 C = 8678.535147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.058 4.058 4 C -0.136 4.136 5 C 0.550 3.450 6 O -0.583 6.583 7 N -0.689 5.689 8 C 0.140 3.860 9 C 0.126 3.874 10 H 0.039 0.961 11 C 0.057 3.943 12 O -0.397 6.397 13 C 0.046 3.954 14 C 0.149 3.851 15 N -0.605 5.605 16 C -0.241 4.241 17 H 0.066 0.934 18 C -0.023 4.023 19 N -0.922 5.922 20 Si 0.934 3.066 21 H -0.293 1.293 22 H -0.290 1.290 23 H -0.279 1.279 24 C -0.080 4.080 25 C -0.115 4.115 26 C -0.022 4.022 27 Cl -0.051 7.051 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.412 0.588 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.119 0.881 37 H 0.043 0.957 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.008 0.992 41 H 0.251 0.749 42 H 0.136 0.864 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.135 -1.206 6.553 12.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.078 4.078 4 C -0.139 4.139 5 C 0.338 3.662 6 O -0.466 6.466 7 N -0.339 5.339 8 C 0.016 3.984 9 C 0.020 3.980 10 H 0.057 0.943 11 C -0.021 4.021 12 O -0.315 6.315 13 C -0.032 4.032 14 C 0.024 3.976 15 N -0.331 5.331 16 C -0.371 4.371 17 H 0.084 0.916 18 C -0.221 4.221 19 N -0.568 5.568 20 Si 0.764 3.236 21 H -0.220 1.220 22 H -0.216 1.216 23 H -0.204 1.204 24 C -0.099 4.099 25 C -0.134 4.134 26 C -0.049 4.049 27 Cl -0.022 7.022 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.250 0.750 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.061 0.939 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.026 0.974 41 H 0.060 0.940 42 H 0.153 0.847 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.407 -0.707 6.619 12.353 hybrid contribution -0.094 -1.189 -1.327 1.784 sum -10.501 -1.896 5.292 11.911 Atomic orbital electron populations 1.20942 0.87642 1.04417 1.04206 1.19985 0.98518 0.90239 0.99884 1.21190 0.92046 0.98608 0.95909 1.20099 0.94988 0.92898 1.05926 1.18429 0.82529 0.88838 0.76434 1.90685 1.69237 1.33428 1.53295 1.45969 1.05353 1.11047 1.71493 1.21195 0.90116 0.85631 1.01469 1.21564 0.92470 0.93914 0.90091 0.94301 1.22986 0.81334 0.95212 1.02590 1.87807 1.24625 1.80772 1.38337 1.23219 1.00373 0.94387 0.85241 1.21247 0.83353 0.92946 1.00083 1.44297 1.01903 1.63586 1.23351 1.19230 0.96823 1.02494 1.18577 0.91605 1.25476 0.98659 0.96128 1.01789 1.70072 1.29186 1.15253 1.42241 0.85783 0.79769 0.77207 0.80867 1.21981 1.21624 1.20395 1.21416 1.00689 0.91239 0.96604 1.21179 0.92246 0.99438 1.00529 1.21150 0.92403 0.87580 1.03722 1.98358 1.76098 1.31167 1.96582 0.89017 0.89822 0.90194 0.83570 0.74964 0.92861 0.89748 0.93231 0.86350 0.93884 0.87797 0.91569 0.97363 0.93953 0.84668 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.61 71.24 0.68 -1.29 16 2 C -0.09 -2.04 5.88 -19.88 -0.12 -2.16 16 3 C -0.06 -1.65 9.24 22.52 0.21 -1.44 16 4 C -0.14 -4.44 5.87 -20.09 -0.12 -4.55 16 5 C 0.55 20.49 7.77 86.77 0.67 21.17 16 6 O -0.58 -24.19 16.35 -3.91 -0.06 -24.25 16 7 N -0.69 -25.33 3.75 -466.02 -1.75 -27.08 16 8 C 0.14 4.91 4.44 86.38 0.38 5.29 16 9 C 0.13 4.62 3.20 44.96 0.14 4.76 16 10 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 11 C 0.06 1.83 6.29 72.08 0.45 2.28 16 12 O -0.40 -14.16 10.74 -148.98 -1.60 -15.76 16 13 C 0.05 1.65 6.98 72.08 0.50 2.15 16 14 C 0.15 6.61 5.38 86.35 0.46 7.07 16 15 N -0.61 -26.92 3.03 -673.71 -2.04 -28.96 16 16 C -0.24 -11.63 7.11 84.03 0.60 -11.04 16 17 H 0.07 3.28 5.81 -2.91 -0.02 3.26 16 18 C -0.02 -1.17 5.06 84.86 0.43 -0.75 16 19 N -0.92 -48.89 11.13 21.65 0.24 -48.65 16 20 Si 0.93 42.57 29.57 68.60 2.03 44.60 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 C -0.08 -2.45 9.54 22.52 0.21 -2.24 16 25 C -0.12 -3.05 9.81 22.25 0.22 -2.83 16 26 C -0.02 -0.53 6.32 22.40 0.14 -0.39 16 27 Cl -0.05 -1.05 27.27 -2.72 -0.07 -1.13 16 28 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 30 H 0.08 1.27 6.89 -2.39 -0.02 1.26 16 31 H 0.15 3.97 7.65 -2.91 -0.02 3.94 16 32 H 0.41 15.71 5.41 -92.71 -0.50 15.20 16 33 H 0.05 2.06 7.53 -2.39 -0.02 2.04 16 34 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 39 H 0.07 3.28 6.32 -2.39 -0.02 3.27 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 42 H 0.14 4.28 6.40 -2.91 -0.02 4.26 16 43 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -59.46 361.25 2.16 -57.29 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.54 Total: 27.89 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 4.88 Total: 16.05 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -3.55 Total: -104.69 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.66 Total: -40.01 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.07 Total: -1.13 kcal Total: -59.46 2.16 -57.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051092914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.668 kcal (2) G-P(sol) polarization free energy of solvation -59.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds