Wall clock time and date at job start Tue Mar 31 2020 20:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47357 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47466 * 29.99616 * 3 2 1 6 6 H 1.48502 * 109.47444 * 149.99701 * 3 2 1 7 7 C 1.38805 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99525 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.80994 * 99.99613 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.46948 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99686 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00141 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00129 * 174.97223 * 13 11 10 15 15 C 1.53010 * 112.84911 * 294.02337 * 14 13 11 16 16 N 1.46504 * 109.47083 * 311.52266 * 15 14 13 17 17 C 1.34770 * 119.99770 * 174.96292 * 16 15 14 18 18 O 1.21605 * 120.00407 * 359.97438 * 17 16 15 19 19 C 1.47406 * 119.99795 * 179.97438 * 17 16 15 20 20 N 1.31623 * 125.86722 * 359.68363 * 19 17 16 21 21 C 1.33100 * 109.09543 * 179.89275 * 20 19 17 22 22 C 1.35563 * 108.35101 * 0.37530 * 21 20 19 23 23 N 1.35400 * 107.16398 * 359.77221 * 22 21 20 24 24 H 0.97001 * 126.44217 * 179.97438 * 23 22 21 25 25 C 1.53775 * 113.61642 * 162.71865 * 14 13 11 26 26 C 1.53782 * 87.08260 * 270.88377 * 25 14 13 27 27 C 1.53778 * 113.61810 * 65.22018 * 14 13 11 28 28 H 0.96997 * 120.00355 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47754 * 299.99498 * 10 9 7 30 30 H 1.09000 * 109.47201 * 60.00124 * 10 9 7 31 31 H 0.97000 * 119.99644 * 354.97698 * 13 11 10 32 32 H 1.09002 * 109.46765 * 71.51831 * 15 14 13 33 33 H 1.08994 * 109.47258 * 191.52127 * 15 14 13 34 34 H 0.96999 * 119.99881 * 354.95553 * 16 15 14 35 35 H 1.07995 * 125.81831 * 180.12206 * 21 20 19 36 36 H 1.08002 * 126.41428 * 179.79688 * 22 21 20 37 37 H 1.09000 * 113.61589 * 25.43393 * 25 14 13 38 38 H 1.09000 * 113.61764 * 156.33151 * 25 14 13 39 39 H 1.08996 * 113.61346 * 220.02295 * 26 25 14 40 40 H 1.08999 * 113.61492 * 89.11500 * 26 25 14 41 41 H 1.08995 * 113.61919 * 203.66926 * 27 14 13 42 42 H 1.09010 * 113.61004 * 334.56873 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7724 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3441 -2.2962 0.0024 13 7 6.0458 -4.4946 0.0041 14 6 7.4862 -4.7375 -0.1070 15 6 8.0579 -4.3114 -1.4608 16 7 7.2193 -4.8476 -2.5357 17 6 7.4722 -4.5154 -3.8171 18 8 8.3963 -3.7703 -4.0811 19 6 6.6288 -5.0554 -4.8987 20 7 5.6076 -5.8716 -4.7459 21 6 5.0857 -6.1444 -5.9395 22 6 5.8053 -5.4854 -6.8806 23 7 6.7765 -4.7992 -6.2331 24 1 7.4506 -4.2326 -6.6398 25 6 7.9073 -6.1524 0.3238 26 6 8.0581 -5.5892 1.7468 27 6 8.2932 -4.2168 1.0940 28 1 -0.4850 0.8400 -0.0004 29 1 3.6434 -3.4310 0.8927 30 1 3.6440 -3.4321 -0.8873 31 1 5.4322 -5.2422 0.0786 32 1 8.0749 -3.2232 -1.5216 33 1 9.0721 -4.6970 -1.5645 34 1 6.4820 -5.4417 -2.3251 35 1 4.2367 -6.7850 -6.1267 36 1 5.6355 -5.5040 -7.9470 37 1 7.1127 -6.8924 0.2290 38 1 8.8481 -6.4813 -0.1176 39 1 8.9279 -5.9742 2.2789 40 1 7.1427 -5.6413 2.3363 41 1 9.3394 -4.0165 0.8632 42 1 7.8099 -3.3940 1.6210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062954484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:41 Heat of formation + Delta-G solvation = 9.895904 kcal Electronic energy + Delta-G solvation = -26730.379255 eV Core-core repulsion = 22838.537026 eV Total energy + Delta-G solvation = -3891.842228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.44499 -40.74914 -39.17319 -37.89996 -34.77196 -33.14936 -32.86362 -32.42725 -30.44548 -29.34110 -27.83629 -26.00652 -25.60501 -24.09363 -22.53278 -21.82007 -20.99170 -20.49365 -19.49298 -18.94994 -17.86884 -16.80562 -16.47758 -16.43692 -15.93959 -15.63982 -15.37558 -14.99245 -14.73635 -14.54476 -14.38469 -14.26495 -14.00289 -13.80422 -13.51119 -13.37494 -12.87311 -12.79254 -12.54946 -12.27472 -11.79343 -11.26892 -11.13843 -11.05452 -10.99912 -10.61455 -10.59584 -10.55243 -10.53788 -10.46356 -9.84819 -9.52068 -9.24394 -9.03914 -8.97870 -8.82524 -8.49034 -6.90324 -6.28061 -3.99407 1.13383 2.31435 2.38799 2.72315 2.94312 3.19467 3.24835 3.33072 3.35037 3.51010 3.63067 4.06301 4.16230 4.33816 4.40169 4.49495 4.63511 4.70261 4.76281 4.96389 5.05749 5.10033 5.11170 5.31153 5.42014 5.43202 5.49094 5.64159 5.65723 5.76593 5.76835 5.86718 5.99315 6.03164 6.04710 6.18899 6.28790 6.61102 6.82462 7.18223 7.55846 7.58163 7.94615 7.95074 8.42842 8.47667 9.18267 10.81253 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008530 B = 0.003801 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.846643 B = 7364.936965 C = 9557.674762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.536 3.464 12 O -0.509 6.509 13 N -0.718 5.718 14 C 0.142 3.858 15 C 0.122 3.878 16 N -0.694 5.694 17 C 0.606 3.394 18 O -0.542 6.542 19 C 0.146 3.854 20 N -0.442 5.442 21 C -0.026 4.026 22 C -0.024 4.024 23 N -0.525 5.525 24 H 0.430 0.570 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.133 4.133 28 H 0.270 0.730 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.402 0.598 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.411 0.589 35 H 0.180 0.820 36 H 0.187 0.813 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.096 -17.558 -7.401 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.322 3.678 12 O -0.382 6.382 13 N -0.374 5.374 14 C 0.055 3.945 15 C -0.003 4.003 16 N -0.345 5.345 17 C 0.390 3.610 18 O -0.419 6.419 19 C -0.116 4.116 20 N -0.164 5.164 21 C -0.179 4.179 22 C -0.164 4.164 23 N -0.126 5.126 24 H 0.270 0.730 25 C -0.174 4.174 26 C -0.176 4.176 27 C -0.172 4.172 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.237 0.763 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.247 0.753 35 H 0.197 0.803 36 H 0.204 0.796 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.625 -15.623 -6.768 24.505 hybrid contribution -1.126 -0.392 -1.093 1.617 sum 16.499 -16.014 -7.861 24.299 Atomic orbital electron populations 1.69937 1.05908 1.27732 1.48146 1.24698 0.94426 0.98902 0.93191 0.86750 0.81908 0.83360 0.79913 1.19278 1.19935 1.15925 1.22323 0.88310 0.97527 1.58697 0.89386 1.84788 1.09243 0.99939 1.97417 1.23283 0.93954 1.04462 1.05794 1.20266 0.90518 0.82140 0.74884 1.90698 1.58589 1.42088 1.46868 1.45683 1.05940 1.08381 1.77357 1.21476 0.82214 0.97172 0.93677 1.21796 0.93406 1.01197 0.83881 1.45422 1.34627 1.49745 1.04705 1.16432 0.82545 0.80263 0.81771 1.90849 1.31017 1.36618 1.83394 1.22646 1.00358 1.04210 0.84365 1.70201 1.06594 1.12290 1.27351 1.22526 1.03017 1.04921 0.87479 1.23015 0.93172 1.00003 1.00187 1.42944 1.25962 1.36619 1.07113 0.73045 1.23281 1.02393 0.94678 0.97081 1.22830 1.02360 0.96473 0.95933 1.23176 1.00322 0.98141 0.95563 0.91963 0.88521 0.88482 0.76279 0.89289 0.90397 0.75252 0.80316 0.79577 0.90593 0.88586 0.91062 0.89871 0.89145 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.71 13.97 55.49 0.78 -25.94 16 2 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 22.00 27.74 -169.99 -4.72 17.29 16 4 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 7 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 11 C 0.54 9.04 7.40 -10.98 -0.08 8.96 16 12 O -0.51 -10.39 13.86 5.56 0.08 -10.32 16 13 N -0.72 -8.34 4.53 -46.86 -0.21 -8.56 16 14 C 0.14 1.46 0.63 -131.01 -0.08 1.37 16 15 C 0.12 1.45 4.93 -4.03 -0.02 1.43 16 16 N -0.69 -8.43 5.38 -61.39 -0.33 -8.76 16 17 C 0.61 8.48 7.81 -12.53 -0.10 8.39 16 18 O -0.54 -8.87 17.09 5.27 0.09 -8.78 16 19 C 0.15 1.83 7.95 -154.51 -1.23 0.61 16 20 N -0.44 -5.48 10.90 -11.26 -0.12 -5.60 16 21 C -0.03 -0.25 11.85 -17.96 -0.21 -0.47 16 22 C -0.02 -0.19 12.00 -16.93 -0.20 -0.39 16 23 N -0.52 -5.03 6.14 -10.78 -0.07 -5.10 16 24 H 0.43 3.26 8.96 -40.82 -0.37 2.89 16 25 C -0.14 -0.97 7.37 -25.92 -0.19 -1.16 16 26 C -0.14 -1.08 7.99 -25.92 -0.21 -1.29 16 27 C -0.13 -1.38 6.95 -25.92 -0.18 -1.56 16 28 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 31 H 0.40 3.59 8.67 -40.82 -0.35 3.23 16 32 H 0.09 1.39 7.34 -51.93 -0.38 1.01 16 33 H 0.08 0.81 7.94 -51.93 -0.41 0.39 16 34 H 0.41 4.53 7.79 -40.82 -0.32 4.21 16 35 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.19 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.10 0.59 7.96 -51.93 -0.41 0.17 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 42 H 0.08 1.14 7.19 -51.92 -0.37 0.76 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -37.29 372.77 -8.52 -45.81 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.57 Total: 8.17 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -2.07 Total: 1.72 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.04 Total: -53.95 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.17 Total: -19.10 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.29 -8.52 -45.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062954484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.704 kcal (2) G-P(sol) polarization free energy of solvation -37.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds