Wall clock time and date at job start Tue Mar 31 2020 20:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47357 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47466 * 29.99616 * 3 2 1 6 6 H 1.48502 * 109.47444 * 149.99701 * 3 2 1 7 7 C 1.38805 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99525 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.80994 * 99.99613 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.46948 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99686 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00141 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00129 * 174.97223 * 13 11 10 15 15 C 1.53010 * 112.84911 * 294.02337 * 14 13 11 16 16 N 1.46504 * 109.47083 * 311.52266 * 15 14 13 17 17 C 1.34770 * 119.99770 * 174.96292 * 16 15 14 18 18 O 1.21605 * 120.00407 * 359.97438 * 17 16 15 19 19 C 1.47406 * 119.99795 * 179.97438 * 17 16 15 20 20 N 1.31623 * 125.86722 * 359.68363 * 19 17 16 21 21 C 1.33100 * 109.09543 * 179.89275 * 20 19 17 22 22 C 1.35563 * 108.35101 * 0.37530 * 21 20 19 23 23 N 1.35400 * 107.16398 * 359.77221 * 22 21 20 24 24 H 0.97001 * 126.44217 * 179.97438 * 23 22 21 25 25 C 1.53775 * 113.61642 * 162.71865 * 14 13 11 26 26 C 1.53782 * 87.08260 * 270.88377 * 25 14 13 27 27 C 1.53778 * 113.61810 * 65.22018 * 14 13 11 28 28 H 0.96997 * 120.00355 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47754 * 299.99498 * 10 9 7 30 30 H 1.09000 * 109.47201 * 60.00124 * 10 9 7 31 31 H 0.97000 * 119.99644 * 354.97698 * 13 11 10 32 32 H 1.09002 * 109.46765 * 71.51831 * 15 14 13 33 33 H 1.08994 * 109.47258 * 191.52127 * 15 14 13 34 34 H 0.96999 * 119.99881 * 354.95553 * 16 15 14 35 35 H 1.07995 * 125.81831 * 180.12206 * 21 20 19 36 36 H 1.08002 * 126.41428 * 179.79688 * 22 21 20 37 37 H 1.09000 * 113.61589 * 25.43393 * 25 14 13 38 38 H 1.09000 * 113.61764 * 156.33151 * 25 14 13 39 39 H 1.08996 * 113.61346 * 220.02295 * 26 25 14 40 40 H 1.08999 * 113.61492 * 89.11500 * 26 25 14 41 41 H 1.08995 * 113.61919 * 203.66926 * 27 14 13 42 42 H 1.09010 * 113.61004 * 334.56873 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7724 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3441 -2.2962 0.0024 13 7 6.0458 -4.4946 0.0041 14 6 7.4862 -4.7375 -0.1070 15 6 8.0579 -4.3114 -1.4608 16 7 7.2193 -4.8476 -2.5357 17 6 7.4722 -4.5154 -3.8171 18 8 8.3963 -3.7703 -4.0811 19 6 6.6288 -5.0554 -4.8987 20 7 5.6076 -5.8716 -4.7459 21 6 5.0857 -6.1444 -5.9395 22 6 5.8053 -5.4854 -6.8806 23 7 6.7765 -4.7992 -6.2331 24 1 7.4506 -4.2326 -6.6398 25 6 7.9073 -6.1524 0.3238 26 6 8.0581 -5.5892 1.7468 27 6 8.2932 -4.2168 1.0940 28 1 -0.4850 0.8400 -0.0004 29 1 3.6434 -3.4310 0.8927 30 1 3.6440 -3.4321 -0.8873 31 1 5.4322 -5.2422 0.0786 32 1 8.0749 -3.2232 -1.5216 33 1 9.0721 -4.6970 -1.5645 34 1 6.4820 -5.4417 -2.3251 35 1 4.2367 -6.7850 -6.1267 36 1 5.6355 -5.5040 -7.9470 37 1 7.1127 -6.8924 0.2290 38 1 8.8481 -6.4813 -0.1176 39 1 8.9279 -5.9742 2.2789 40 1 7.1427 -5.6413 2.3363 41 1 9.3394 -4.0165 0.8632 42 1 7.8099 -3.3940 1.6210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062954484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:41 Heat of formation + Delta-G solvation = -19.468746 kcal Electronic energy + Delta-G solvation = -26731.652601 eV Core-core repulsion = 22838.537026 eV Total energy + Delta-G solvation = -3893.115575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.21442 -41.75631 -40.25615 -39.06527 -35.76492 -34.69326 -34.32596 -33.67832 -31.32454 -30.68309 -28.80178 -27.85938 -26.72723 -24.94857 -23.47195 -22.54206 -22.06445 -21.46789 -20.40327 -19.96032 -19.80433 -17.89848 -17.69042 -17.41225 -17.11846 -16.92241 -16.66308 -16.45306 -16.00329 -15.58054 -15.52347 -15.19786 -15.01936 -14.91368 -14.80702 -14.55007 -14.41483 -13.95993 -13.65964 -13.36612 -13.23156 -13.04898 -12.77042 -12.61559 -11.91976 -11.90872 -11.81111 -11.53449 -11.39366 -11.36904 -11.33935 -11.19233 -10.84300 -10.54740 -10.30118 -10.11760 -9.56608 -9.00574 -8.53262 -6.23430 0.27945 0.96478 1.28495 1.43254 1.48119 1.54355 1.57255 1.61817 2.15061 2.23144 2.31522 2.51603 2.70235 2.85112 3.22649 3.38399 3.63614 3.65333 3.86122 3.97233 4.03870 4.22195 4.35047 4.39565 4.43472 4.46719 4.47098 4.68688 4.82571 4.87649 4.96122 5.06594 5.11809 5.13138 5.18986 5.34234 5.59666 5.64908 5.69384 6.09995 6.10822 6.25981 6.46498 6.76369 6.92230 6.97707 7.21208 8.59340 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008530 B = 0.003801 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.846643 B = 7364.936965 C = 9557.674762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.049 3.951 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.062 0.938 9 S -0.176 6.176 10 C -0.111 4.111 11 C 0.540 3.460 12 O -0.549 6.549 13 N -0.693 5.693 14 C 0.134 3.866 15 C 0.126 3.874 16 N -0.686 5.686 17 C 0.600 3.400 18 O -0.578 6.578 19 C 0.104 3.896 20 N -0.458 5.458 21 C -0.052 4.052 22 C 0.005 3.995 23 N -0.521 5.521 24 H 0.438 0.562 25 C -0.116 4.116 26 C -0.129 4.129 27 C -0.141 4.141 28 H 0.277 0.723 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.419 0.581 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.417 0.583 35 H 0.204 0.796 36 H 0.234 0.766 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.025 -19.696 -8.220 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.181 1.181 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.080 0.920 9 S 0.051 5.949 10 C -0.262 4.262 11 C 0.326 3.674 12 O -0.425 6.425 13 N -0.348 5.348 14 C 0.047 3.953 15 C 0.001 3.999 16 N -0.337 5.337 17 C 0.385 3.615 18 O -0.457 6.457 19 C -0.155 4.155 20 N -0.182 5.182 21 C -0.205 4.205 22 C -0.135 4.135 23 N -0.123 5.123 24 H 0.278 0.722 25 C -0.153 4.153 26 C -0.166 4.166 27 C -0.180 4.180 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.257 0.743 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.254 0.746 35 H 0.220 0.780 36 H 0.250 0.750 37 H 0.114 0.886 38 H 0.133 0.867 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.546 -17.820 -7.557 26.807 hybrid contribution -1.432 0.108 -0.935 1.713 sum 17.115 -17.712 -8.492 26.053 Atomic orbital electron populations 1.70008 1.07234 1.28992 1.49184 1.25512 0.95222 1.02059 0.92908 0.85908 0.80756 0.79882 0.80064 1.19036 1.18101 1.16147 1.22464 0.90270 0.96683 1.58192 0.91951 1.84722 1.06428 1.06202 1.97565 1.23269 0.96215 0.99566 1.07177 1.19874 0.89126 0.83422 0.74996 1.90697 1.59010 1.43722 1.49114 1.45398 1.07316 1.06971 1.75141 1.21742 0.80734 1.00112 0.92755 1.21757 0.94667 0.98754 0.84707 1.45386 1.34602 1.49341 1.04355 1.16747 0.82357 0.79825 0.82569 1.90812 1.32625 1.38305 1.83992 1.22366 1.01541 1.06415 0.85153 1.70123 1.06636 1.12299 1.29098 1.23131 1.04226 1.06038 0.87071 1.23808 0.90811 0.97026 1.01896 1.43061 1.26379 1.36483 1.06394 0.72152 1.23266 1.03768 0.92490 0.95778 1.22796 1.03057 0.94285 0.96453 1.23244 1.00563 0.98563 0.95627 0.91352 0.86727 0.87496 0.74267 0.93518 0.88605 0.74567 0.77967 0.75010 0.88576 0.86682 0.89187 0.90145 0.88117 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.28 13.97 21.65 0.30 -55.97 16 2 C 0.05 2.88 5.50 84.86 0.47 3.35 16 3 Si 0.91 45.81 27.74 68.60 1.90 47.72 16 4 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.24 -11.94 6.74 99.48 0.67 -11.27 16 7 C -0.53 -31.17 10.04 67.96 0.68 -30.49 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 10 C -0.11 -4.22 6.16 71.24 0.44 -3.79 16 11 C 0.54 18.19 7.40 87.66 0.65 18.84 16 12 O -0.55 -22.98 13.86 -3.03 -0.04 -23.02 16 13 N -0.69 -15.27 4.53 -420.54 -1.91 -17.17 16 14 C 0.13 2.56 0.63 4.13 0.00 2.56 16 15 C 0.13 2.98 4.93 86.38 0.43 3.40 16 16 N -0.69 -16.51 5.38 -466.38 -2.51 -19.02 16 17 C 0.60 17.05 7.81 86.66 0.68 17.73 16 18 O -0.58 -19.56 17.09 -4.05 -0.07 -19.63 16 19 C 0.10 2.59 7.95 136.27 1.08 3.67 16 20 N -0.46 -10.88 10.90 -189.52 -2.06 -12.95 16 21 C -0.05 -0.88 11.85 83.88 0.99 0.12 16 22 C 0.00 0.06 12.00 83.52 1.00 1.06 16 23 N -0.52 -9.28 6.14 -188.01 -1.16 -10.43 16 24 H 0.44 6.19 8.96 -92.71 -0.83 5.36 16 25 C -0.12 -1.24 7.37 31.12 0.23 -1.01 16 26 C -0.13 -1.65 7.99 31.12 0.25 -1.40 16 27 C -0.14 -2.79 6.95 31.12 0.22 -2.57 16 28 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 29 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 30 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 31 H 0.42 6.48 8.67 -92.71 -0.80 5.67 16 32 H 0.05 1.53 7.34 -2.39 -0.02 1.51 16 33 H 0.10 1.91 7.94 -2.39 -0.02 1.89 16 34 H 0.42 8.80 7.79 -92.71 -0.72 8.07 16 35 H 0.20 2.22 8.06 -2.91 -0.02 2.19 16 36 H 0.23 0.53 8.06 -2.91 -0.02 0.51 16 37 H 0.10 0.73 8.09 -2.39 -0.02 0.71 16 38 H 0.11 0.91 7.96 -2.39 -0.02 0.90 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 42 H 0.05 1.37 7.19 -2.38 -0.02 1.35 16 Total: -1.00 -84.91 372.77 -0.77 -85.68 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -1.30 Total: 23.40 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 7.12 Total: 11.47 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -7.33 Total: -115.54 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.11 Total: -42.65 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.72 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -84.91 -0.77 -85.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062954484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.211 kcal (2) G-P(sol) polarization free energy of solvation -84.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds