Wall clock time and date at job start Tue Mar 31 2020 20:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47288 * 270.00691 * 3 2 1 5 5 H 1.48501 * 109.46900 * 30.00506 * 3 2 1 6 6 H 1.48497 * 109.46809 * 150.00424 * 3 2 1 7 7 C 1.38946 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00040 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00595 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00693 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99711 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00188 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99924 * 180.02562 * 13 12 10 15 15 C 1.53786 * 113.61608 * 105.85932 * 14 13 12 16 16 C 1.53962 * 87.01719 * 89.22903 * 15 14 13 17 17 C 1.52998 * 113.74183 * 139.94755 * 16 15 14 18 18 N 1.46499 * 109.47146 * 87.39824 * 17 16 15 19 19 C 1.34782 * 119.99464 * 179.97438 * 18 17 16 20 20 O 1.21623 * 120.00211 * 0.02562 * 19 18 17 21 21 C 1.47269 * 119.99447 * 180.02562 * 19 18 17 22 22 C 1.35203 * 123.13918 * 180.02562 * 21 19 18 23 23 S 1.70948 * 108.82945 * 179.97438 * 22 21 19 24 24 C 1.70771 * 91.12297 * 359.97438 * 23 22 21 25 25 N 1.28642 * 110.56255 * 359.76753 * 24 23 22 26 26 C 1.53781 * 113.61428 * 203.46824 * 14 13 12 27 27 H 0.97005 * 120.00057 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99412 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47122 * 60.00287 * 12 10 9 30 30 H 1.09001 * 109.46900 * 300.00559 * 12 10 9 31 31 H 1.00902 * 110.99778 * 303.95198 * 13 12 10 32 32 H 1.09002 * 112.84869 * 334.66356 * 14 13 12 33 33 H 1.08993 * 113.61491 * 203.75024 * 15 14 13 34 34 H 1.09000 * 113.61138 * 334.65362 * 15 14 13 35 35 H 1.08997 * 113.53543 * 270.80998 * 16 15 14 36 36 H 1.09004 * 109.46932 * 207.40247 * 17 16 15 37 37 H 1.09000 * 109.46657 * 327.39883 * 17 16 15 38 38 H 0.96996 * 120.00000 * 0.02562 * 18 17 16 39 39 H 1.08004 * 125.58522 * 359.95460 * 22 21 19 40 40 H 1.08011 * 124.71359 * 180.02562 * 24 23 22 41 41 H 1.09001 * 113.61695 * 25.34696 * 26 14 13 42 42 H 1.08997 * 113.61223 * 156.25279 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1982 -5.9795 -0.0027 14 6 1.4979 -7.2708 -0.0039 15 6 1.5432 -7.9950 -1.3598 16 6 2.8517 -8.6470 -0.8771 17 6 2.9841 -10.1216 -1.2630 18 7 3.5871 -10.2257 -2.5941 19 6 3.8021 -11.4376 -3.1434 20 8 3.4952 -12.4446 -2.5343 21 6 4.4088 -11.5423 -4.4813 22 6 4.6522 -12.7237 -5.0920 23 16 5.3566 -12.4202 -6.6197 24 6 5.2849 -10.7346 -6.3554 25 7 4.7640 -10.4791 -5.2072 26 6 2.3402 -8.4289 0.5567 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6167 -4.9201 -0.8919 30 1 0.6173 -4.9212 0.8880 31 1 2.8331 -5.9121 -0.7840 32 1 0.4979 -7.2104 0.4257 33 1 0.7286 -8.7048 -1.5031 34 1 1.6758 -7.3242 -2.2087 35 1 3.7419 -8.0653 -1.1163 36 1 3.6166 -10.6319 -0.5366 37 1 1.9972 -10.5842 -1.2739 38 1 3.8321 -9.4226 -3.0797 39 1 4.4371 -13.6994 -4.6818 40 1 5.6254 -9.9870 -7.0566 41 1 3.1153 -8.1081 1.2527 42 1 1.7439 -9.2577 0.9383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100178708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:58 Heat of formation + Delta-G solvation = -32.948053 kcal Electronic energy + Delta-G solvation = -25154.462474 eV Core-core repulsion = 21260.762392 eV Total energy + Delta-G solvation = -3893.700082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57515 -40.70330 -39.92600 -39.42430 -36.23059 -35.83424 -34.30055 -33.23042 -31.73446 -29.62575 -27.97628 -26.61989 -26.50549 -25.60667 -23.91335 -22.91145 -21.13175 -20.96734 -20.14445 -19.91904 -19.59860 -17.91624 -17.66304 -17.12335 -16.92987 -16.75380 -16.47521 -16.33098 -15.95298 -15.85764 -15.49493 -15.32261 -14.84234 -14.73671 -14.38878 -14.31589 -14.08887 -13.60992 -13.49408 -13.24465 -13.22919 -12.96261 -12.92976 -12.64966 -12.42095 -12.12579 -11.82198 -11.57295 -11.50834 -11.27957 -11.04804 -10.87315 -10.75131 -10.33631 -10.27726 -10.01865 -9.90988 -9.28034 -8.46830 -5.95648 -0.48976 0.31262 0.62811 0.90230 1.38006 1.41846 1.54757 2.04880 2.16076 2.25411 2.29055 2.89235 3.10848 3.20379 3.48349 3.60800 3.69121 3.79238 3.96901 4.04481 4.14350 4.28338 4.34267 4.35125 4.47376 4.53807 4.64952 4.67872 4.80672 4.85489 4.88063 4.92223 5.14731 5.23708 5.30562 5.40818 5.43987 5.93610 6.16654 6.22904 6.42556 6.55139 6.59931 7.04175 7.12334 7.55927 8.11221 8.70491 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.001723 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.725612 B =16244.233809 C =17552.012519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.066 3.934 13 N -0.664 5.664 14 C 0.061 3.939 15 C -0.155 4.155 16 C -0.114 4.114 17 C 0.134 3.866 18 N -0.703 5.703 19 C 0.586 3.414 20 O -0.574 6.574 21 C -0.025 4.025 22 C -0.239 4.239 23 S 0.297 5.703 24 C -0.008 4.008 25 N -0.473 5.473 26 C -0.114 4.114 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.344 0.656 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.415 0.585 39 H 0.192 0.808 40 H 0.237 0.763 41 H 0.067 0.933 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -26.214 -13.916 30.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.066 4.066 13 N -0.295 5.295 14 C -0.050 4.050 15 C -0.194 4.194 16 C -0.133 4.133 17 C 0.011 3.989 18 N -0.353 5.353 19 C 0.371 3.629 20 O -0.455 6.455 21 C -0.160 4.160 22 C -0.382 4.382 23 S 0.553 5.447 24 C -0.307 4.307 25 N -0.188 5.188 26 C -0.153 4.153 27 H 0.087 0.913 28 H 0.231 0.769 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.164 0.836 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.209 0.791 40 H 0.253 0.747 41 H 0.086 0.914 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.754 -26.734 -13.418 30.461 hybrid contribution -0.714 1.457 -0.049 1.623 sum 5.040 -25.277 -13.467 29.081 Atomic orbital electron populations 1.69670 1.06810 1.29306 1.50272 1.26048 0.96570 1.02431 0.96267 0.84922 0.77857 0.76847 0.78670 1.19549 1.19523 1.19856 1.19667 0.92706 0.84059 1.49975 0.90356 1.41933 1.09347 1.04709 1.65000 1.20913 0.88264 0.86223 0.82192 1.90490 1.15899 1.87992 1.56707 1.21565 0.94021 0.87920 1.03084 1.59953 1.18351 1.00263 1.50944 1.22686 0.97708 0.87845 0.96727 1.23755 0.97933 1.00275 0.97438 1.22718 0.98475 0.93903 0.98171 1.21447 0.98387 0.96467 0.82556 1.45872 1.61809 1.08186 1.19448 1.17432 0.77728 0.83612 0.84148 1.90779 1.54149 1.37022 1.63506 1.20381 1.08669 0.89097 0.97891 1.26937 1.05235 1.04138 1.01912 1.82712 1.50147 1.01983 1.09846 1.29098 1.02241 1.01807 0.97511 1.66947 1.13223 1.32350 1.06257 1.23026 0.99726 0.97486 0.95040 0.91286 0.76941 0.91510 0.87721 0.83605 0.88546 0.88099 0.91960 0.89255 0.91590 0.90892 0.74898 0.79095 0.74689 0.91422 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.53 5.29 -306.99 -1.62 -31.15 16 10 C 0.44 20.88 7.82 87.66 0.69 21.56 16 11 O -0.62 -34.88 15.78 -3.07 -0.05 -34.93 16 12 C 0.07 2.26 6.02 85.56 0.52 2.77 16 13 N -0.66 -20.62 6.19 -492.86 -3.05 -23.68 16 14 C 0.06 1.35 4.26 45.44 0.19 1.54 16 15 C -0.15 -2.90 7.18 31.18 0.22 -2.68 16 16 C -0.11 -2.15 3.50 -10.21 -0.04 -2.19 16 17 C 0.13 2.61 5.52 86.38 0.48 3.09 16 18 N -0.70 -14.81 5.55 -466.51 -2.59 -17.40 16 19 C 0.59 14.33 7.80 86.62 0.68 15.01 16 20 O -0.57 -17.14 16.71 -4.10 -0.07 -17.21 16 21 C -0.03 -0.51 6.70 40.56 0.27 -0.23 16 22 C -0.24 -3.53 10.62 67.12 0.71 -2.81 16 23 S 0.30 2.01 22.97 -56.49 -1.30 0.71 16 24 C -0.01 -0.08 12.17 130.71 1.59 1.51 16 25 N -0.47 -8.37 10.12 -193.02 -1.95 -10.33 16 26 C -0.11 -2.22 7.44 31.12 0.23 -1.99 16 27 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 28 H 0.40 19.36 7.90 -92.70 -0.73 18.63 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.10 3.22 8.13 -2.39 -0.02 3.20 16 31 H 0.34 11.33 7.79 -89.69 -0.70 10.63 16 32 H 0.10 1.94 7.88 -2.39 -0.02 1.92 16 33 H 0.10 1.61 7.91 -2.39 -0.02 1.59 16 34 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 36 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.07 1.40 7.86 -2.39 -0.02 1.38 16 38 H 0.41 8.14 7.99 -92.71 -0.74 7.40 16 39 H 0.19 2.58 8.03 -2.91 -0.02 2.56 16 40 H 0.24 0.56 8.06 -2.91 -0.02 0.53 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.11 1.63 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -75.50 376.41 -2.58 -78.09 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -1.08 Total: 43.20 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 6.82 Total: 17.03 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -8.94 Total: -131.96 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -0.12 Total: -52.14 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.30 Total: 0.71 kcal Total: -75.50 -2.58 -78.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100178708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.138 kcal (2) G-P(sol) polarization free energy of solvation -75.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds