Wall clock time and date at job start Tue Mar 31 2020 20:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 120.00077 * 2 1 4 4 H 1.48504 * 109.46627 * 240.00032 * 3 2 1 5 5 H 1.48494 * 109.46777 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47265 * 119.99926 * 3 2 1 7 7 C 1.38802 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00258 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99723 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00087 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47056 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00386 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99724 * 180.02562 * 11 10 9 14 14 C 1.47217 * 136.37868 * 359.96438 * 13 11 10 15 15 C 1.53916 * 87.74139 * 152.04786 * 14 13 11 16 16 H 1.09000 * 115.07191 * 141.23935 * 15 14 13 17 17 C 1.53145 * 111.80883 * 274.01107 * 15 14 13 18 18 C 1.53097 * 108.80594 * 138.91426 * 17 15 14 19 19 N 1.46397 * 109.07841 * 297.74076 * 18 17 15 20 20 C 1.46899 * 111.00153 * 190.43786 * 19 18 17 21 21 C 1.50707 * 109.46986 * 66.04301 * 20 19 18 22 22 C 1.40901 * 125.30067 * 95.00313 * 21 20 19 23 23 N 1.29948 * 109.38952 * 179.97438 * 22 21 20 24 24 O 1.41882 * 107.41391 * 359.97438 * 23 22 21 25 25 N 1.29948 * 125.30338 * 274.69667 * 21 20 19 26 26 C 1.45489 * 113.12841 * 64.89047 * 19 18 17 27 27 C 1.46638 * 136.38091 * 179.97438 * 13 11 10 28 28 H 1.09004 * 111.72770 * 95.92685 * 27 13 11 29 29 H 0.97003 * 120.00164 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47027 * 59.99931 * 10 9 7 31 31 H 1.09001 * 109.46915 * 300.00267 * 10 9 7 32 32 H 1.08998 * 113.50967 * 266.76738 * 14 13 11 33 33 H 1.08999 * 113.50506 * 37.33814 * 14 13 11 34 34 H 1.08993 * 109.50649 * 19.15764 * 17 15 14 35 35 H 1.09004 * 109.65880 * 258.75278 * 17 15 14 36 36 H 1.09002 * 109.55149 * 177.83492 * 18 17 15 37 37 H 1.09003 * 109.54804 * 57.64284 * 18 17 15 38 38 H 1.08995 * 109.47227 * 186.04280 * 20 19 18 39 39 H 1.09004 * 109.46854 * 306.04921 * 20 19 18 40 40 H 1.08000 * 125.30642 * 359.97438 * 22 21 20 41 41 H 1.09002 * 108.57981 * 71.68128 * 26 19 18 42 42 H 1.09004 * 108.57622 * 189.34464 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9873 -5.3027 0.0036 12 8 0.7911 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0049 14 6 4.3056 -6.5201 0.0054 15 6 4.0818 -7.8607 0.7278 16 1 4.7404 -8.6703 0.4134 17 6 3.9805 -7.6795 2.2451 18 6 2.8635 -8.5816 2.7764 19 7 1.5910 -8.1680 2.1824 20 6 0.4606 -8.8348 2.8422 21 6 0.3611 -8.3608 4.2693 22 6 -0.4661 -7.3147 4.7240 23 7 -0.3094 -7.1667 6.0055 24 8 0.6414 -8.1300 6.4310 25 7 1.0207 -8.8568 5.2731 26 6 1.5427 -8.3631 0.7415 27 6 2.7380 -7.8056 0.0063 28 1 2.8135 -8.2167 -1.0004 29 1 -0.4850 0.8401 -0.0004 30 1 3.1244 -3.7306 0.8927 31 1 3.1245 -3.7321 -0.8872 32 1 4.7307 -6.6295 -0.9923 33 1 4.8326 -5.7828 0.6110 34 1 3.7492 -6.6390 2.4727 35 1 4.9262 -7.9559 2.7113 36 1 2.8063 -8.4910 3.8611 37 1 3.0721 -9.6172 2.5074 38 1 -0.4620 -8.5938 2.3142 39 1 0.6164 -9.9136 2.8277 40 1 -1.1274 -6.7274 4.1042 41 1 1.4769 -9.4319 0.5378 42 1 0.6430 -7.8834 0.3561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221291908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:07 Heat of formation + Delta-G solvation = 116.607315 kcal Electronic energy + Delta-G solvation = -27079.147354 eV Core-core repulsion = 23191.932480 eV Total energy + Delta-G solvation = -3887.214874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67378 -41.16494 -38.13018 -37.03072 -33.78359 -32.82972 -32.42993 -32.16996 -30.59283 -28.97099 -27.82080 -25.85888 -25.47411 -23.93033 -23.50303 -22.15080 -21.09210 -20.45396 -18.22525 -17.66594 -17.45414 -16.86317 -16.39086 -16.22895 -15.73601 -15.38079 -15.15438 -14.99031 -14.80264 -14.51681 -14.19439 -14.03408 -13.75364 -13.52829 -13.01040 -12.87070 -12.63284 -12.53919 -12.31019 -11.98924 -11.94331 -11.88806 -11.65552 -11.31822 -11.29920 -11.07691 -11.03992 -11.03787 -10.91797 -10.76265 -10.41771 -9.82135 -9.24998 -9.05787 -8.57000 -8.52002 -8.24031 -6.49431 -6.21666 -3.91851 0.33181 1.78367 2.48221 2.78100 2.99903 3.13715 3.23534 3.24763 3.28820 3.51093 3.57920 3.79233 3.99767 4.20898 4.43906 4.48156 4.64207 4.66175 4.84284 4.90746 4.97643 5.02055 5.11374 5.12800 5.14182 5.21248 5.26837 5.27825 5.33131 5.44363 5.54781 5.56347 5.60167 5.75469 5.84628 5.93159 6.03587 6.14472 6.18368 6.64254 6.71782 6.84810 7.59359 7.94948 8.35045 8.63069 9.23773 10.85693 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.003285 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.716783 B = 8522.201443 C =10011.786555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.917 3.083 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.071 0.929 9 S -0.058 6.058 10 C -0.144 4.144 11 C 0.569 3.431 12 O -0.512 6.512 13 N -0.639 5.639 14 C 0.101 3.899 15 C -0.124 4.124 16 H 0.099 0.901 17 C -0.095 4.095 18 C 0.055 3.945 19 N -0.533 5.533 20 C 0.125 3.875 21 C 0.088 3.912 22 C 0.068 3.932 23 N -0.272 5.272 24 O 0.019 5.981 25 N -0.276 5.276 26 C 0.063 3.937 27 C 0.142 3.858 28 H 0.090 0.910 29 H 0.269 0.731 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.217 0.783 41 H 0.039 0.961 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 -21.812 2.356 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.134 4.134 3 Si 0.743 3.257 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.089 0.911 9 S 0.169 5.831 10 C -0.295 4.295 11 C 0.359 3.641 12 O -0.386 6.386 13 N -0.379 5.379 14 C -0.022 4.022 15 C -0.143 4.143 16 H 0.117 0.883 17 C -0.133 4.133 18 C -0.072 4.072 19 N -0.259 5.259 20 C -0.003 4.003 21 C -0.095 4.095 22 C -0.135 4.135 23 N -0.016 5.016 24 O -0.122 6.122 25 N -0.021 5.021 26 C -0.065 4.065 27 C 0.038 3.962 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.131 0.869 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.057 0.943 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.076 -21.506 3.786 22.419 hybrid contribution 1.866 0.753 -1.016 2.254 sum 6.942 -20.752 2.770 22.057 Atomic orbital electron populations 1.70002 1.05930 1.27545 1.46833 1.24968 0.95007 0.98945 0.94507 0.86247 0.79282 0.81313 0.78813 1.19949 1.20781 1.19930 1.22823 0.94856 0.91719 1.59036 0.91083 1.85310 1.04922 0.96185 1.96705 1.23464 1.06407 0.95056 1.04542 1.19738 0.85243 0.84530 0.74560 1.90660 1.14664 1.84808 1.48426 1.49545 1.07448 1.05203 1.75655 1.23126 0.82871 0.96013 1.00206 1.22953 0.96969 0.98300 0.96127 0.88278 1.21394 0.97703 1.01491 0.92673 1.22034 0.88713 0.96781 0.99689 1.60315 1.01885 1.59681 1.04014 1.20618 0.97160 0.96973 0.85581 1.24538 0.93273 0.93776 0.97898 1.26150 0.98650 0.96241 0.92445 1.79985 1.03257 1.05985 1.12341 1.93394 1.51631 1.40512 1.26649 1.79857 1.15379 1.13485 0.93422 1.21377 1.00587 0.98676 0.85875 1.21918 0.93842 0.81989 0.98447 0.89208 0.92141 0.89618 0.89679 0.89921 0.90182 0.90301 0.90749 0.90269 0.94398 0.86929 0.91744 0.76703 0.94268 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 2 C 0.08 2.13 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.14 -2.94 6.00 36.00 0.22 -2.73 16 11 C 0.57 10.49 8.02 -10.99 -0.09 10.40 16 12 O -0.51 -10.98 15.25 5.56 0.08 -10.89 16 13 N -0.64 -8.48 3.37 -184.65 -0.62 -9.10 16 14 C 0.10 0.94 7.78 -10.48 -0.08 0.86 16 15 C -0.12 -0.95 4.61 -90.26 -0.42 -1.37 16 16 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 17 C -0.09 -0.84 5.76 -26.61 -0.15 -1.00 16 18 C 0.06 0.51 5.33 -4.05 -0.02 0.49 16 19 N -0.53 -5.42 4.55 -238.88 -1.09 -6.51 16 20 C 0.13 1.03 5.50 -4.97 -0.03 1.01 16 21 C 0.09 0.90 5.98 -82.38 -0.49 0.41 16 22 C 0.07 0.72 11.90 -17.34 -0.21 0.51 16 23 N -0.27 -3.59 12.98 30.70 0.40 -3.19 16 24 O 0.02 0.26 13.71 12.02 0.16 0.43 16 25 N -0.28 -3.34 11.67 33.74 0.39 -2.94 16 26 C 0.06 0.61 4.97 -5.59 -0.03 0.58 16 27 C 0.14 1.39 4.10 -76.36 -0.31 1.07 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.08 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 34 H 0.08 0.93 7.69 -51.93 -0.40 0.53 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.84 6.03 -51.93 -0.31 0.53 16 37 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.11 0.76 8.03 -51.93 -0.42 0.34 16 39 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 40 H 0.22 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 42 H 0.10 1.23 6.98 -51.93 -0.36 0.87 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -35.56 365.29 -8.75 -44.32 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.68 Total: -2.24 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.41 Total: -2.68 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.18 Total: -47.04 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.25 Total: -10.47 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.56 -8.75 -44.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221291908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.925 kcal (2) G-P(sol) polarization free energy of solvation -35.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds