Wall clock time and date at job start Tue Mar 31 2020 20:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86810 * 119.99914 * 2 1 4 4 H 1.48504 * 109.47094 * 270.00211 * 3 2 1 5 5 H 1.48498 * 109.46655 * 30.00228 * 3 2 1 6 6 H 1.48493 * 109.47014 * 150.00443 * 3 2 1 7 7 C 1.38803 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99999 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99497 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99632 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.47021 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99843 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99830 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99681 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47005 * 179.97438 * 14 13 11 16 16 C 1.53787 * 113.61726 * 185.00021 * 15 14 13 17 17 C 1.53782 * 87.08282 * 220.02254 * 16 15 14 18 18 N 1.46498 * 113.61292 * 139.98206 * 17 16 15 19 19 C 1.34780 * 120.00016 * 156.53107 * 18 17 16 20 20 O 1.21600 * 119.99391 * 359.97438 * 19 18 17 21 21 C 1.47409 * 119.99816 * 179.97438 * 19 18 17 22 22 N 1.31611 * 125.86435 * 359.95211 * 21 19 18 23 23 C 1.33106 * 109.09112 * 180.02562 * 22 21 19 24 24 C 1.35560 * 108.35180 * 359.73955 * 23 22 21 25 25 N 1.35405 * 107.16078 * 0.42180 * 24 23 22 26 26 H 0.97001 * 126.44288 * 179.85167 * 25 24 23 27 27 C 1.53784 * 87.17365 * 25.38792 * 17 16 15 28 28 H 0.96998 * 120.00113 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47550 * 60.00114 * 10 9 7 30 30 H 1.09000 * 109.47433 * 299.99496 * 10 9 7 31 31 H 0.96998 * 120.00153 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.47101 * 60.00192 * 14 13 11 33 33 H 1.08995 * 109.47202 * 300.00207 * 14 13 11 34 34 H 1.09000 * 112.85140 * 316.19891 * 15 14 13 35 35 H 1.08999 * 113.61644 * 105.46828 * 16 15 14 36 36 H 1.08998 * 113.68480 * 334.58262 * 16 15 14 37 37 H 1.08997 * 113.61165 * 270.79872 * 17 16 15 38 38 H 0.96999 * 119.99973 * 336.52118 * 18 17 16 39 39 H 1.08001 * 125.82303 * 180.02562 * 23 22 21 40 40 H 1.08000 * 126.42103 * 180.26842 * 24 23 22 41 41 H 1.09001 * 113.61350 * 89.15840 * 27 17 16 42 42 H 1.08994 * 113.61634 * 220.05816 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0466 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8444 -6.3430 -0.0003 14 6 2.3306 -7.7150 -0.0003 15 6 3.5027 -8.6984 -0.0014 16 6 3.0723 -10.1697 -0.1243 17 6 4.1669 -10.4941 0.9060 18 7 3.7653 -11.5008 1.8916 19 6 4.7022 -12.2249 2.5355 20 8 5.8807 -12.0428 2.2979 21 6 4.2980 -13.2375 3.5276 22 7 3.0618 -13.5279 3.8732 23 6 3.0815 -14.4891 4.7938 24 6 4.3731 -14.8225 5.0351 25 7 5.1429 -14.0355 4.2468 26 1 6.1117 -14.0401 4.1985 27 6 4.0177 -9.0478 1.4068 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1246 -3.7313 -0.8905 31 1 3.8011 -6.1834 -0.0006 32 1 1.7217 -7.8750 -0.8901 33 1 1.7224 -7.8752 0.8899 34 1 4.2924 -8.4149 -0.6972 35 1 3.2586 -10.5984 -1.1090 36 1 2.0620 -10.3620 0.2368 37 1 5.1388 -10.7033 0.4592 38 1 2.8251 -11.6462 2.0809 39 1 2.2159 -14.9314 5.2644 40 1 4.7227 -15.5734 5.7282 41 1 3.2662 -8.9315 2.1878 42 1 4.9660 -8.5721 1.6564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285194038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:32 Heat of formation + Delta-G solvation = 1.345932 kcal Electronic energy + Delta-G solvation = -24739.350054 eV Core-core repulsion = 20847.137071 eV Total energy + Delta-G solvation = -3892.212983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.73657 -40.49644 -39.23409 -38.39401 -34.81530 -33.71735 -32.97786 -32.41348 -30.45909 -29.73071 -27.21917 -26.11054 -25.46365 -24.57233 -22.26987 -22.10339 -20.90352 -20.60346 -20.02846 -19.06128 -17.84142 -17.05496 -16.78167 -16.26639 -16.14696 -15.81315 -15.50486 -15.11902 -14.79047 -14.67348 -14.64593 -14.43497 -14.12422 -13.90906 -13.65745 -13.14056 -12.85680 -12.64270 -12.54666 -12.34194 -11.84689 -11.55876 -11.08515 -11.05151 -11.00874 -10.87978 -10.83049 -10.78490 -10.74380 -10.64723 -9.79905 -9.55734 -9.36652 -9.12290 -9.05584 -8.84017 -8.21737 -6.48230 -6.20235 -3.90632 0.82736 2.05515 2.07233 2.91152 2.99042 3.07776 3.13317 3.23464 3.29208 3.33698 3.71803 3.78678 4.07287 4.21906 4.24192 4.40792 4.42451 4.46547 4.68936 4.82163 4.96332 5.13264 5.14933 5.19891 5.33929 5.37003 5.38104 5.46689 5.58230 5.64558 5.69547 5.82348 5.91822 5.94963 5.99654 6.14992 6.16553 6.54073 6.65631 6.90142 7.28167 7.61029 7.63494 7.74351 8.36681 8.64738 9.25094 10.87189 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025804 B = 0.001516 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.832852 B =18461.368888 C =18524.854786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.738 5.738 14 C 0.133 3.867 15 C -0.119 4.119 16 C -0.134 4.134 17 C 0.121 3.879 18 N -0.692 5.692 19 C 0.609 3.391 20 O -0.542 6.542 21 C 0.141 3.859 22 N -0.442 5.442 23 C -0.027 4.027 24 C -0.022 4.022 25 N -0.525 5.525 26 H 0.431 0.569 27 C -0.146 4.146 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.414 0.586 39 H 0.180 0.820 40 H 0.188 0.812 41 H 0.091 0.909 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.975 -31.654 6.667 34.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.009 3.991 15 C -0.139 4.139 16 C -0.172 4.172 17 C 0.017 3.983 18 N -0.343 5.343 19 C 0.393 3.607 20 O -0.419 6.419 21 C -0.120 4.120 22 N -0.164 5.164 23 C -0.180 4.180 24 C -0.162 4.162 25 N -0.127 5.127 26 H 0.270 0.730 27 C -0.185 4.185 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.136 0.864 38 H 0.251 0.749 39 H 0.198 0.802 40 H 0.205 0.795 41 H 0.109 0.891 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.939 -31.328 6.126 33.433 hybrid contribution 3.141 0.738 0.591 3.280 sum 13.080 -30.590 6.717 33.941 Atomic orbital electron populations 1.70018 1.05948 1.27435 1.46890 1.24990 0.95018 0.99008 0.94542 0.86171 0.79410 0.81592 0.78340 1.20273 1.20755 1.19716 1.22875 0.94921 0.91692 1.58920 0.90932 1.85392 1.04999 0.96318 1.96714 1.23533 1.06523 0.95471 1.04896 1.20306 0.86533 0.86318 0.75161 1.90701 1.15399 1.85640 1.47575 1.45986 1.09918 1.05471 1.77879 1.21230 0.95035 0.80367 1.02438 1.22633 0.98643 0.94463 0.98126 1.23332 0.99266 0.95050 0.99601 1.22674 0.99931 0.86540 0.89175 1.45671 1.10237 1.37635 1.40710 1.16502 0.85532 0.79315 0.79393 1.90850 1.17057 1.68502 1.65470 1.22681 0.85876 1.01034 1.02437 1.70214 1.19022 1.14233 1.12970 1.22553 0.96500 0.98820 1.00116 1.23055 0.92396 1.00292 1.00430 1.42966 1.11090 1.28153 1.30445 0.72970 1.23626 1.02579 0.95214 0.97076 0.92194 0.89262 0.89245 0.76822 0.91377 0.91428 0.87989 0.90032 0.88760 0.86388 0.74884 0.80240 0.79484 0.89060 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.11 5.50 -17.43 -0.10 2.01 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 11 C 0.53 9.86 7.85 -10.98 -0.09 9.77 16 12 O -0.52 -11.81 15.86 5.56 0.09 -11.72 16 13 N -0.74 -9.51 5.56 -60.29 -0.33 -9.84 16 14 C 0.13 1.43 5.51 -4.04 -0.02 1.41 16 15 C -0.12 -0.86 3.75 -89.71 -0.34 -1.19 16 16 C -0.13 -0.81 7.39 -25.92 -0.19 -1.00 16 17 C 0.12 0.86 4.21 -67.12 -0.28 0.58 16 18 N -0.69 -5.35 5.36 -54.10 -0.29 -5.64 16 19 C 0.61 5.82 7.81 -12.53 -0.10 5.72 16 20 O -0.54 -6.45 16.71 5.28 0.09 -6.36 16 21 C 0.14 1.22 7.95 -154.52 -1.23 -0.01 16 22 N -0.44 -3.88 10.90 -11.26 -0.12 -4.00 16 23 C -0.03 -0.17 11.85 -17.96 -0.21 -0.38 16 24 C -0.02 -0.10 12.00 -16.93 -0.20 -0.30 16 25 N -0.52 -3.09 6.15 -10.78 -0.07 -3.16 16 26 H 0.43 1.70 8.96 -40.82 -0.37 1.33 16 27 C -0.15 -1.10 7.45 -25.82 -0.19 -1.29 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 31 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 37 H 0.12 0.92 7.50 -51.93 -0.39 0.53 16 38 H 0.41 2.82 8.39 -40.82 -0.34 2.47 16 39 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.19 0.06 8.06 -52.49 -0.42 -0.36 16 41 H 0.09 0.75 7.90 -51.93 -0.41 0.34 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -38.22 380.36 -9.45 -47.67 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.61 Total: 2.87 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.43 Total: -2.60 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.08 Total: -48.18 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.18 Total: -18.08 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.22 -9.45 -47.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285194038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.017 kcal (2) G-P(sol) polarization free energy of solvation -38.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds