Wall clock time and date at job start Tue Mar 31 2020 20:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86810 * 119.99914 * 2 1 4 4 H 1.48504 * 109.47094 * 270.00211 * 3 2 1 5 5 H 1.48498 * 109.46655 * 30.00228 * 3 2 1 6 6 H 1.48493 * 109.47014 * 150.00443 * 3 2 1 7 7 C 1.38803 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99999 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99497 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99632 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.47021 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99843 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99830 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99681 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47005 * 179.97438 * 14 13 11 16 16 C 1.53787 * 113.61726 * 185.00021 * 15 14 13 17 17 C 1.53782 * 87.08282 * 220.02254 * 16 15 14 18 18 N 1.46498 * 113.61292 * 139.98206 * 17 16 15 19 19 C 1.34780 * 120.00016 * 156.53107 * 18 17 16 20 20 O 1.21600 * 119.99391 * 359.97438 * 19 18 17 21 21 C 1.47409 * 119.99816 * 179.97438 * 19 18 17 22 22 N 1.31611 * 125.86435 * 359.95211 * 21 19 18 23 23 C 1.33106 * 109.09112 * 180.02562 * 22 21 19 24 24 C 1.35560 * 108.35180 * 359.73955 * 23 22 21 25 25 N 1.35405 * 107.16078 * 0.42180 * 24 23 22 26 26 H 0.97001 * 126.44288 * 179.85167 * 25 24 23 27 27 C 1.53784 * 87.17365 * 25.38792 * 17 16 15 28 28 H 0.96998 * 120.00113 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47550 * 60.00114 * 10 9 7 30 30 H 1.09000 * 109.47433 * 299.99496 * 10 9 7 31 31 H 0.96998 * 120.00153 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.47101 * 60.00192 * 14 13 11 33 33 H 1.08995 * 109.47202 * 300.00207 * 14 13 11 34 34 H 1.09000 * 112.85140 * 316.19891 * 15 14 13 35 35 H 1.08999 * 113.61644 * 105.46828 * 16 15 14 36 36 H 1.08998 * 113.68480 * 334.58262 * 16 15 14 37 37 H 1.08997 * 113.61165 * 270.79872 * 17 16 15 38 38 H 0.96999 * 119.99973 * 336.52118 * 18 17 16 39 39 H 1.08001 * 125.82303 * 180.02562 * 23 22 21 40 40 H 1.08000 * 126.42103 * 180.26842 * 24 23 22 41 41 H 1.09001 * 113.61350 * 89.15840 * 27 17 16 42 42 H 1.08994 * 113.61634 * 220.05816 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0466 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8444 -6.3430 -0.0003 14 6 2.3306 -7.7150 -0.0003 15 6 3.5027 -8.6984 -0.0014 16 6 3.0723 -10.1697 -0.1243 17 6 4.1669 -10.4941 0.9060 18 7 3.7653 -11.5008 1.8916 19 6 4.7022 -12.2249 2.5355 20 8 5.8807 -12.0428 2.2979 21 6 4.2980 -13.2375 3.5276 22 7 3.0618 -13.5279 3.8732 23 6 3.0815 -14.4891 4.7938 24 6 4.3731 -14.8225 5.0351 25 7 5.1429 -14.0355 4.2468 26 1 6.1117 -14.0401 4.1985 27 6 4.0177 -9.0478 1.4068 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1246 -3.7313 -0.8905 31 1 3.8011 -6.1834 -0.0006 32 1 1.7217 -7.8750 -0.8901 33 1 1.7224 -7.8752 0.8899 34 1 4.2924 -8.4149 -0.6972 35 1 3.2586 -10.5984 -1.1090 36 1 2.0620 -10.3620 0.2368 37 1 5.1388 -10.7033 0.4592 38 1 2.8251 -11.6462 2.0809 39 1 2.2159 -14.9314 5.2644 40 1 4.7227 -15.5734 5.7282 41 1 3.2662 -8.9315 2.1878 42 1 4.9660 -8.5721 1.6564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285194038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:32 Heat of formation + Delta-G solvation = -28.449361 kcal Electronic energy + Delta-G solvation = -24740.642074 eV Core-core repulsion = 20847.137071 eV Total energy + Delta-G solvation = -3893.505004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.20942 -41.20911 -40.45367 -39.26809 -35.83014 -34.60173 -34.55336 -33.54689 -31.43037 -30.70556 -28.28659 -27.57662 -26.68314 -25.24610 -22.96331 -22.53936 -21.84463 -21.48711 -20.82457 -19.83591 -19.56041 -17.91204 -17.62928 -17.49668 -16.87592 -16.78035 -16.68267 -16.66209 -16.15202 -15.69964 -15.36122 -15.25737 -14.90189 -14.67028 -14.65448 -14.53907 -14.39515 -13.61659 -13.42187 -13.23236 -13.15718 -12.96142 -12.87713 -12.62184 -12.28920 -11.81324 -11.66240 -11.47219 -11.39674 -11.34305 -11.32717 -11.13627 -10.89528 -10.26625 -10.20714 -10.04734 -9.56588 -8.65780 -8.33983 -6.12030 0.28615 1.28210 1.42991 1.47917 1.55491 1.59097 1.60033 1.64521 2.27151 2.30946 2.34000 2.54427 3.00121 3.24869 3.32751 3.46987 3.57886 3.80787 3.83115 4.03021 4.05032 4.29323 4.31531 4.35914 4.46202 4.47506 4.52931 4.71653 4.79351 4.83757 4.87119 4.96414 5.02800 5.09432 5.22543 5.42508 5.47152 5.55049 5.61955 6.13291 6.20495 6.31310 6.54892 6.77679 7.00663 7.07312 7.28390 8.75253 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025804 B = 0.001516 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.832852 B =18461.368888 C =18524.854786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.711 5.711 14 C 0.132 3.868 15 C -0.106 4.106 16 C -0.123 4.123 17 C 0.121 3.879 18 N -0.686 5.686 19 C 0.605 3.395 20 O -0.574 6.574 21 C 0.104 3.896 22 N -0.462 5.462 23 C -0.053 4.053 24 C 0.005 3.995 25 N -0.520 5.520 26 H 0.439 0.561 27 C -0.146 4.146 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.416 0.584 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.418 0.582 39 H 0.201 0.799 40 H 0.232 0.768 41 H 0.083 0.917 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.278 -32.849 7.118 36.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.365 5.365 14 C 0.009 3.991 15 C -0.126 4.126 16 C -0.162 4.162 17 C 0.017 3.983 18 N -0.336 5.336 19 C 0.391 3.609 20 O -0.453 6.453 21 C -0.155 4.155 22 N -0.186 5.186 23 C -0.206 4.206 24 C -0.136 4.136 25 N -0.123 5.123 26 H 0.280 0.720 27 C -0.185 4.185 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.253 0.747 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.132 0.868 38 H 0.256 0.744 39 H 0.218 0.782 40 H 0.248 0.752 41 H 0.101 0.899 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.288 -32.550 6.563 35.406 hybrid contribution 2.442 0.904 0.528 2.657 sum 14.730 -31.646 7.091 35.620 Atomic orbital electron populations 1.70183 1.07975 1.28601 1.48000 1.26126 0.95957 1.03301 0.93719 0.84952 0.78176 0.76026 0.78806 1.19265 1.20300 1.18253 1.23217 0.95366 0.92058 1.58895 0.89917 1.85568 1.10684 0.99257 1.97052 1.23383 1.03485 0.94517 1.06759 1.20059 0.86260 0.86740 0.75199 1.90689 1.17482 1.86150 1.50345 1.45755 1.10257 1.05190 1.75269 1.21385 0.96466 0.79507 1.01772 1.22569 0.97590 0.94044 0.98354 1.23303 0.99076 0.93823 1.00001 1.22663 1.00201 0.86145 0.89321 1.45671 1.10245 1.37279 1.40384 1.16708 0.85268 0.79484 0.79480 1.90816 1.18135 1.69681 1.66711 1.22503 0.86515 1.02508 1.03966 1.70145 1.19402 1.15183 1.13840 1.23106 0.98328 0.98888 1.00267 1.23783 0.91545 0.99221 0.99016 1.43070 1.11561 1.27676 1.29996 0.72044 1.23608 1.02320 0.95551 0.97019 0.91994 0.87356 0.87154 0.74682 0.91891 0.92385 0.86197 0.88595 0.88387 0.86789 0.74430 0.78214 0.75191 0.89880 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 2 C 0.01 0.79 5.50 84.86 0.47 1.25 16 3 Si 1.00 43.76 29.55 68.60 2.03 45.78 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.55 -31.45 9.50 67.96 0.65 -30.81 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 10 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 11 C 0.53 19.47 7.85 87.66 0.69 20.16 16 12 O -0.57 -26.38 15.86 -3.02 -0.05 -26.43 16 13 N -0.71 -17.11 5.56 -463.06 -2.57 -19.69 16 14 C 0.13 2.67 5.51 86.38 0.48 3.15 16 15 C -0.11 -1.31 3.75 -10.21 -0.04 -1.35 16 16 C -0.12 -1.28 7.39 31.12 0.23 -1.05 16 17 C 0.12 1.61 4.21 45.52 0.19 1.80 16 18 N -0.69 -10.48 5.36 -443.32 -2.38 -12.86 16 19 C 0.61 11.69 7.81 86.66 0.68 12.36 16 20 O -0.57 -13.82 16.71 -4.03 -0.07 -13.89 16 21 C 0.10 1.78 7.95 136.28 1.08 2.86 16 22 N -0.46 -7.92 10.90 -189.53 -2.06 -9.98 16 23 C -0.05 -0.57 11.85 83.88 0.99 0.42 16 24 C 0.00 0.03 12.00 83.52 1.00 1.03 16 25 N -0.52 -5.50 6.15 -188.02 -1.16 -6.65 16 26 H 0.44 2.99 8.96 -92.71 -0.83 2.16 16 27 C -0.15 -2.02 7.45 31.18 0.23 -1.79 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 30 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 31 H 0.42 7.15 8.47 -92.71 -0.79 6.37 16 32 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.06 1.33 7.85 -2.39 -0.02 1.31 16 34 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.10 0.98 8.07 -2.39 -0.02 0.96 16 37 H 0.11 1.67 7.50 -2.39 -0.02 1.65 16 38 H 0.42 5.67 8.39 -92.71 -0.78 4.89 16 39 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.23 -0.82 8.06 -2.91 -0.02 -0.85 16 41 H 0.08 1.31 7.90 -2.39 -0.02 1.29 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -86.33 380.36 -1.35 -87.68 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -1.31 Total: 18.38 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 7.09 Total: 3.33 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -7.88 Total: -105.15 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.12 Total: -40.32 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -86.33 -1.35 -87.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285194038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.229 kcal (2) G-P(sol) polarization free energy of solvation -86.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds