Wall clock time and date at job start Tue Mar 31 2020 21:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38106 * 120.07699 * 2 1 4 4 Cl 1.73597 * 119.94292 * 359.97438 * 3 2 1 5 5 C 1.38446 * 120.11362 * 179.97438 * 3 2 1 6 6 C 1.38360 * 120.28327 * 359.72499 * 5 3 2 7 7 C 1.37950 * 120.15565 * 0.54985 * 6 5 3 8 8 C 1.39534 * 120.08141 * 179.97438 * 2 1 3 9 9 C 1.47851 * 120.14114 * 0.02562 * 8 2 1 10 10 O 1.21550 * 119.99746 * 353.80127 * 9 8 2 11 11 N 1.34776 * 120.00232 * 173.79285 * 9 8 2 12 12 C 1.46501 * 119.99780 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46645 * 180.02562 * 12 11 9 14 14 O 1.42899 * 110.64488 * 66.68457 * 13 12 11 15 15 C 1.55160 * 110.71720 * 190.02460 * 13 12 11 16 16 C 1.54905 * 101.58101 * 153.86079 * 15 13 12 17 17 N 1.47413 * 104.83516 * 322.98788 * 16 15 13 18 18 C 1.36944 * 125.65354 * 204.16525 * 17 16 15 19 19 H 1.07994 * 120.00379 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99653 * 359.95730 * 18 17 16 21 21 N 1.31623 * 119.99813 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00127 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46822 * 89.99985 * 22 20 18 24 24 H 1.48501 * 109.47009 * 209.99869 * 22 20 18 25 25 H 1.48498 * 109.46872 * 329.99837 * 22 20 18 26 26 C 1.47026 * 108.70329 * 24.13092 * 17 16 15 27 27 H 1.08995 * 109.47393 * 263.46076 * 1 2 3 28 28 H 1.08997 * 109.46955 * 23.46518 * 1 2 3 29 29 H 1.09003 * 109.46750 * 143.46140 * 1 2 3 30 30 H 1.08001 * 119.85565 * 180.02562 * 5 3 2 31 31 H 1.07999 * 119.92338 * 180.30007 * 6 5 3 32 32 H 1.07997 * 120.05529 * 179.71825 * 7 6 5 33 33 H 0.96995 * 119.99957 * 0.02562 * 11 9 8 34 34 H 1.09007 * 109.46981 * 299.99655 * 12 11 9 35 35 H 1.08997 * 109.47336 * 60.00113 * 12 11 9 36 36 H 0.96694 * 114.00032 * 300.70045 * 14 13 12 37 37 H 1.09005 * 110.99944 * 271.93860 * 15 13 12 38 38 H 1.09000 * 111.00563 * 35.78555 * 15 13 12 39 39 H 1.09003 * 110.36552 * 204.14701 * 16 15 13 40 40 H 1.08999 * 110.36695 * 81.83096 * 16 15 13 41 41 H 0.97008 * 119.99922 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.88008 * 239.52360 * 26 17 16 43 43 H 1.08996 * 109.88327 * 118.35677 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1951 0.0000 4 17 1.3317 2.6988 -0.0007 5 6 3.5836 1.1960 0.0005 6 6 4.2821 0.0017 0.0068 7 6 3.6023 -1.1987 0.0011 8 6 2.2064 -1.2074 0.0005 9 6 1.4721 -2.4907 0.0005 10 8 0.2619 -2.4984 0.1137 11 7 2.1446 -3.6519 -0.1251 12 6 1.4169 -4.9234 -0.1257 13 6 2.4085 -6.0784 -0.2803 14 8 3.2489 -6.1784 0.8711 15 6 1.6605 -7.4134 -0.5364 16 6 2.7298 -8.2258 -1.3085 17 7 3.4115 -7.2365 -2.1626 18 6 4.0805 -7.5118 -3.3253 19 1 4.5485 -6.7130 -3.8813 20 6 4.1573 -8.8179 -3.7891 21 7 3.5876 -9.7916 -3.1111 22 14 5.0704 -9.1938 -5.3748 23 1 6.4949 -9.4815 -5.0694 24 1 4.4564 -10.3758 -6.0313 25 1 4.9858 -8.0229 -6.2842 26 6 3.2537 -5.9048 -1.5597 27 1 -0.3634 -0.1170 1.0209 28 1 -0.3633 0.9427 -0.4092 29 1 -0.3633 -0.8257 -0.6119 30 1 4.1207 2.1330 0.0010 31 1 5.3620 0.0091 0.0121 32 1 4.1492 -2.1300 0.0014 33 1 3.1103 -3.6458 -0.2152 34 1 0.8759 -5.0328 0.8143 35 1 0.7102 -4.9373 -0.9554 36 1 3.7672 -5.3819 1.0501 37 1 1.4010 -7.9022 0.4027 38 1 0.7737 -7.2530 -1.1495 39 1 2.2548 -8.9924 -1.9208 40 1 3.4371 -8.6786 -0.6136 41 1 3.6410 -10.7043 -3.4354 42 1 2.7405 -5.2413 -2.2558 43 1 4.2310 -5.4947 -1.3056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671998521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:22 Heat of formation + Delta-G solvation = -34.258730 kcal Electronic energy + Delta-G solvation = -26859.649522 eV Core-core repulsion = 22931.556147 eV Total energy + Delta-G solvation = -3928.093375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 3.30 seconds Orbital eigenvalues (eV) -40.73891 -39.19961 -38.24563 -36.76910 -35.25140 -34.49453 -32.92483 -32.21878 -31.46142 -29.59526 -28.31042 -27.24627 -25.80815 -24.32338 -23.36890 -21.89985 -21.02355 -20.10442 -19.94760 -18.42454 -17.01088 -16.67558 -16.46496 -15.93634 -15.72075 -15.37350 -15.30668 -14.77482 -14.53604 -14.09095 -13.98065 -13.78124 -13.59850 -13.26556 -12.98778 -12.66665 -12.60844 -12.31831 -12.17714 -12.14721 -11.94053 -11.80776 -11.62792 -11.08071 -11.05283 -10.91638 -10.82622 -10.39587 -10.18586 -10.10075 -9.75844 -9.74807 -9.47631 -9.41402 -9.11499 -9.00988 -8.69365 -6.90701 -5.70559 -3.13196 0.38851 0.77140 1.72820 2.55194 2.97043 3.36653 3.39704 3.41407 3.43684 4.28372 4.35113 4.41229 4.42485 4.48069 4.60056 4.80687 4.87509 5.11127 5.14004 5.30889 5.33168 5.38544 5.44778 5.58272 5.61090 5.71259 5.81534 5.84689 5.91040 5.91742 6.09329 6.18533 6.26653 6.34336 6.35917 6.44767 6.54135 6.57413 7.29197 7.51712 7.56381 7.79750 7.87419 8.02699 8.29928 9.15763 9.76191 10.40139 11.33170 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.002471 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.620010 B =11330.663342 C =12057.765303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.013 4.013 3 C -0.051 4.051 4 Cl -0.062 7.062 5 C -0.082 4.082 6 C -0.121 4.121 7 C -0.076 4.076 8 C -0.127 4.127 9 C 0.558 3.442 10 O -0.527 6.527 11 N -0.720 5.720 12 C 0.105 3.895 13 C 0.104 3.896 14 O -0.542 6.542 15 C -0.128 4.128 16 C 0.156 3.844 17 N -0.599 5.599 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.916 3.084 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.281 1.281 26 C 0.116 3.884 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.398 0.602 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.364 0.636 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.019 0.981 41 H 0.253 0.747 42 H 0.031 0.969 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 21.521 8.787 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.015 4.015 3 C -0.077 4.077 4 Cl -0.033 7.033 5 C -0.101 4.101 6 C -0.140 4.140 7 C -0.095 4.095 8 C -0.130 4.130 9 C 0.346 3.654 10 O -0.405 6.405 11 N -0.373 5.373 12 C -0.019 4.019 13 C 0.063 3.937 14 O -0.347 6.347 15 C -0.167 4.167 16 C 0.031 3.969 17 N -0.325 5.325 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.746 3.254 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.011 4.011 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.234 0.766 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.210 0.790 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.912 20.820 8.745 22.769 hybrid contribution 1.405 0.590 -0.843 1.742 sum -1.507 21.410 7.901 22.871 Atomic orbital electron populations 1.21191 0.88990 1.03948 1.04203 1.19876 0.97643 0.89876 0.94058 1.20731 0.92440 0.86961 1.07586 1.98365 1.76888 1.31129 1.96943 1.21259 0.91833 0.99578 0.97430 1.21062 1.00641 0.91247 1.01007 1.21455 0.92879 0.99105 0.96047 1.19747 0.93544 0.92988 1.06729 1.18073 0.87094 0.83415 0.76830 1.90741 1.13486 1.87000 1.49306 1.45940 1.11035 1.06061 1.74224 1.22150 0.95313 0.81168 1.03281 1.22577 0.90110 0.95268 0.85751 1.86638 1.59733 1.41624 1.46660 1.23058 0.99262 0.93547 1.00800 1.21947 0.91017 0.92099 0.91829 1.44406 1.63061 1.00650 1.24410 1.19047 1.26334 0.92945 0.97137 0.90529 1.24803 1.00942 0.95524 0.99233 1.69793 1.48312 0.99609 1.39101 0.86059 0.79155 0.77633 0.82551 1.21582 1.21565 1.20675 1.21920 0.96082 0.90719 0.92379 0.90102 0.91623 0.88069 0.84468 0.84241 0.84817 0.76613 0.90418 0.90021 0.79031 0.91006 0.90524 0.87392 0.96344 0.93599 0.95130 0.96030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.44 36.01 0.30 -1.09 16 2 C -0.01 -0.14 5.92 -104.19 -0.62 -0.76 16 3 C -0.05 -0.48 6.31 -39.55 -0.25 -0.73 16 4 Cl -0.06 -0.55 27.17 -51.86 -1.41 -1.96 16 5 C -0.08 -0.63 9.82 -39.46 -0.39 -1.02 16 6 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 7 C -0.08 -0.64 9.52 -39.18 -0.37 -1.01 16 8 C -0.13 -1.38 5.87 -104.97 -0.62 -1.99 16 9 C 0.56 7.17 7.70 -12.33 -0.09 7.07 16 10 O -0.53 -8.15 13.34 5.32 0.07 -8.08 16 11 N -0.72 -8.50 5.08 -61.24 -0.31 -8.81 16 12 C 0.10 1.45 4.80 -4.04 -0.02 1.43 16 13 C 0.10 1.71 0.93 -88.78 -0.08 1.63 16 14 O -0.54 -8.60 13.10 -35.23 -0.46 -9.06 16 15 C -0.13 -2.38 6.26 -24.58 -0.15 -2.53 16 16 C 0.16 3.75 5.88 -2.54 -0.01 3.74 16 17 N -0.60 -14.95 3.39 -170.08 -0.58 -15.53 16 18 C -0.23 -6.19 10.27 -15.06 -0.15 -6.34 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 22 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.12 2.24 5.76 -3.06 -0.02 2.22 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.64 6.64 -51.93 -0.34 0.29 16 29 H 0.10 1.29 5.85 -51.93 -0.30 0.98 16 30 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 32 H 0.13 0.84 6.45 -52.49 -0.34 0.50 16 33 H 0.40 3.88 5.54 -40.82 -0.23 3.66 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.21 8.03 -51.93 -0.42 0.80 16 36 H 0.36 4.17 8.44 45.56 0.38 4.55 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 39 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.03 0.59 7.82 -51.93 -0.41 0.19 16 43 H 0.02 0.40 8.07 -51.93 -0.42 -0.02 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -32.36 361.57 -9.55 -41.91 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.87 Total: 6.32 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.97 Total: -1.00 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.33 Total: -50.29 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.39 Total: -17.14 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.41 Total: -1.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.36 -9.55 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671998521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.649 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.30 seconds