Wall clock time and date at job start Tue Mar 31 2020 20:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00138 * 2 1 4 4 H 1.48507 * 109.46754 * 269.99541 * 3 2 1 5 5 H 1.48495 * 109.47248 * 29.99093 * 3 2 1 6 6 H 1.48493 * 109.47168 * 149.99820 * 3 2 1 7 7 C 1.38950 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00076 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00071 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00334 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99647 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00300 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.47187 * 180.02562 * 12 10 9 14 14 C 1.47446 * 111.00031 * 55.55885 * 13 12 10 15 15 C 1.54320 * 107.23418 * 123.25942 * 14 13 12 16 16 C 1.55266 * 103.08265 * 22.20449 * 15 14 13 17 17 C 1.47842 * 111.00303 * 176.40270 * 13 12 10 18 18 H 1.08997 * 110.37101 * 332.57668 * 17 13 12 19 19 C 1.53002 * 110.37257 * 94.80376 * 17 13 12 20 20 N 1.46500 * 109.47455 * 298.45015 * 19 17 13 21 21 C 1.34772 * 120.00052 * 173.45599 * 20 19 17 22 22 O 1.21619 * 120.00100 * 0.02562 * 21 20 19 23 23 C 1.47260 * 119.99941 * 180.02562 * 21 20 19 24 24 N 1.30552 * 125.54318 * 180.02562 * 23 21 20 25 25 C 1.30696 * 115.90903 * 180.02562 * 24 23 21 26 26 C 1.34232 * 115.78270 * 359.97438 * 25 24 23 27 27 S 1.71067 * 109.09133 * 0.02562 * 26 25 24 28 28 H 0.97001 * 119.99685 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00289 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47152 * 60.00065 * 12 10 9 31 31 H 1.09006 * 109.47049 * 299.99950 * 12 10 9 32 32 H 1.08994 * 109.89075 * 242.66555 * 14 13 12 33 33 H 1.08997 * 109.88479 * 3.69261 * 14 13 12 34 34 H 1.08994 * 110.71116 * 140.66417 * 15 14 13 35 35 H 1.09001 * 110.70587 * 263.72672 * 15 14 13 36 36 H 1.09000 * 111.08695 * 206.38733 * 16 15 14 37 37 H 1.08999 * 110.94550 * 82.53695 * 16 15 14 38 38 H 1.09001 * 109.46902 * 178.44445 * 19 17 13 39 39 H 1.08999 * 109.47124 * 58.45165 * 19 17 13 40 40 H 0.97005 * 119.99528 * 353.46031 * 20 19 17 41 41 H 1.08001 * 122.10887 * 179.72996 * 25 24 23 42 42 H 1.08004 * 125.45122 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4002 5 1 1.4456 2.6527 0.6998 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0021 11 8 3.4473 -3.4210 0.0021 12 6 5.5607 -2.3706 0.0021 13 7 6.0504 -3.7556 0.0027 14 6 5.4925 -4.5138 -1.1322 15 6 6.6839 -5.0671 -1.9421 16 6 7.8415 -5.0695 -0.9073 17 6 7.5257 -3.7960 -0.0838 18 1 7.9001 -2.9100 -0.5965 19 6 8.1387 -3.9001 1.3142 20 7 7.7693 -2.7192 2.0986 21 6 8.0865 -2.6530 3.4067 22 8 8.6797 -3.5733 3.9360 23 6 7.7148 -1.4661 4.1953 24 7 7.9670 -1.2883 5.4638 25 6 7.5499 -0.1607 5.9764 26 6 6.9170 0.6667 5.1299 27 16 6.8573 -0.0562 3.5806 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3633 0.0014 30 1 5.9241 -1.8560 0.8916 31 1 5.9241 -1.8576 -0.8884 32 1 4.8807 -5.3369 -0.7633 33 1 4.8898 -3.8552 -1.7575 34 1 6.4761 -6.0786 -2.2911 35 1 6.9171 -4.4117 -2.7812 36 1 8.8094 -4.9848 -1.4015 37 1 7.8017 -5.9600 -0.2801 38 1 9.2241 -3.9567 1.2317 39 1 7.7647 -4.7965 1.8090 40 1 7.2965 -1.9850 1.6763 41 1 7.7013 0.0878 7.0165 42 1 6.5098 1.6337 5.3862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731835310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:10 Heat of formation + Delta-G solvation = 1.431395 kcal Electronic energy + Delta-G solvation = -27214.336718 eV Core-core repulsion = 23322.127441 eV Total energy + Delta-G solvation = -3892.209277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43778 -39.79039 -38.88306 -37.77930 -34.84290 -34.07373 -32.16274 -31.66499 -31.15643 -29.98217 -27.07633 -26.81035 -24.94691 -23.97539 -22.06731 -21.30710 -20.56516 -19.79773 -19.43611 -19.00649 -18.28912 -17.10554 -16.60955 -16.12610 -15.82043 -15.59874 -15.38027 -15.06646 -14.90952 -14.50074 -14.29354 -14.05413 -13.66030 -13.61888 -13.49175 -12.98153 -12.65496 -12.42000 -12.34561 -12.17396 -11.85906 -11.74653 -11.41448 -11.36914 -11.17380 -10.99652 -10.68464 -10.64967 -10.58921 -10.04947 -9.96201 -9.87009 -9.63292 -9.36472 -9.12450 -8.60308 -8.25827 -8.14541 -6.38170 -3.89844 0.00329 0.91700 1.35222 2.16021 2.63971 2.92712 2.98308 3.06818 3.07591 3.60703 3.79072 4.02312 4.15593 4.39151 4.57624 4.67456 4.74235 4.83770 4.91211 5.01865 5.06926 5.13375 5.17606 5.32840 5.44046 5.47921 5.57560 5.71573 5.73125 5.75347 5.78014 5.88741 5.99618 6.13962 6.20741 6.49694 7.04390 7.06368 7.09367 7.38784 7.49933 7.90075 8.05945 8.51304 8.87343 9.33764 9.72850 10.74818 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.007543 B = 0.005172 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3711.187320 B = 5412.641387 C = 8571.522037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.043 3.957 3 Si 0.875 3.125 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.588 5.588 10 C 0.449 3.551 11 O -0.556 6.556 12 C 0.036 3.964 13 N -0.503 5.503 14 C 0.062 3.938 15 C -0.147 4.147 16 C -0.116 4.116 17 C 0.052 3.948 18 H 0.062 0.938 19 C 0.138 3.862 20 N -0.714 5.714 21 C 0.597 3.403 22 O -0.502 6.502 23 C -0.008 4.008 24 N -0.400 5.400 25 C 0.026 3.974 26 C -0.259 4.259 27 S 0.187 5.813 28 H 0.274 0.726 29 H 0.369 0.631 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.396 0.604 41 H 0.182 0.818 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.788 1.822 1.339 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.160 4.160 3 Si 0.702 3.298 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.228 5.228 10 C 0.235 3.765 11 O -0.437 6.437 12 C -0.096 4.096 13 N -0.227 5.227 14 C -0.065 4.065 15 C -0.185 4.185 16 C -0.155 4.155 17 C -0.057 4.057 18 H 0.080 0.920 19 C 0.015 3.985 20 N -0.369 5.369 21 C 0.378 3.622 22 O -0.376 6.376 23 C -0.284 4.284 24 N -0.116 5.116 25 C -0.131 4.131 26 C -0.400 4.400 27 S 0.441 5.559 28 H 0.084 0.916 29 H 0.202 0.798 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.234 0.766 41 H 0.198 0.802 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 18.300 0.172 1.477 18.360 hybrid contribution 0.463 2.800 0.200 2.845 sum 18.762 2.972 1.677 19.070 Atomic orbital electron populations 1.69617 1.05634 1.27528 1.49079 1.25030 0.95462 0.97898 0.97632 0.86736 0.79864 0.84256 0.78966 1.19572 1.20100 1.19394 1.19418 0.79089 0.96654 1.48138 0.86201 1.42192 1.07586 1.05987 1.67022 1.19498 0.87802 0.84731 0.84495 1.90588 1.69133 1.30652 1.53309 1.22222 0.96168 0.90717 1.00494 1.63269 1.03914 1.11099 1.44448 1.22708 0.95265 0.98697 0.89869 1.22928 0.95692 1.01986 0.97907 1.22645 0.98591 0.97117 0.97117 1.22921 0.89145 0.99033 0.94553 0.92024 1.21514 0.98832 0.88164 0.89994 1.45951 1.59689 1.22340 1.08926 1.16633 0.79749 0.84331 0.81494 1.90844 1.39790 1.36740 1.70230 1.27552 1.06425 1.00009 0.94416 1.66616 1.17163 1.19488 1.08322 1.21873 0.99856 0.88885 1.02467 1.26823 1.08034 1.07395 0.97747 1.84086 1.49658 1.11360 1.10818 0.91555 0.79830 0.90595 0.92910 0.89558 0.91959 0.90587 0.91747 0.90588 0.90000 0.90758 0.89584 0.76584 0.80155 0.79588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.91 13.96 55.50 0.77 -24.14 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 18.31 27.74 -169.99 -4.72 13.59 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -4.95 6.52 56.52 0.37 -4.58 16 7 C -0.30 -8.23 10.16 -14.94 -0.15 -8.38 16 8 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 9 N -0.59 -13.15 5.09 -10.96 -0.06 -13.20 16 10 C 0.45 9.53 7.10 -10.98 -0.08 9.46 16 11 O -0.56 -13.99 13.97 5.55 0.08 -13.92 16 12 C 0.04 0.55 5.03 -4.98 -0.03 0.52 16 13 N -0.50 -7.27 4.70 -224.82 -1.06 -8.33 16 14 C 0.06 0.91 5.14 -2.83 -0.01 0.90 16 15 C -0.15 -1.52 6.94 -24.84 -0.17 -1.70 16 16 C -0.12 -1.05 6.51 -24.53 -0.16 -1.21 16 17 C 0.05 0.56 2.68 -66.19 -0.18 0.38 16 18 H 0.06 0.57 7.72 -51.93 -0.40 0.17 16 19 C 0.14 1.54 5.39 -4.04 -0.02 1.52 16 20 N -0.71 -8.76 5.34 -61.44 -0.33 -9.08 16 21 C 0.60 8.80 7.81 -12.60 -0.10 8.70 16 22 O -0.50 -8.96 17.05 5.26 0.09 -8.87 16 23 C -0.01 -0.11 7.46 -14.43 -0.11 -0.22 16 24 N -0.40 -5.70 10.59 -11.51 -0.12 -5.82 16 25 C 0.03 0.28 11.24 -19.45 -0.22 0.06 16 26 C -0.26 -2.43 11.09 29.32 0.33 -2.10 16 27 S 0.19 2.01 22.31 -107.50 -2.40 -0.38 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.37 7.14 5.76 -40.82 -0.24 6.90 16 30 H 0.08 1.02 5.35 -51.93 -0.28 0.74 16 31 H 0.05 0.68 8.00 -51.93 -0.42 0.26 16 32 H 0.09 1.45 8.00 -51.93 -0.42 1.03 16 33 H 0.06 1.05 6.61 -51.93 -0.34 0.70 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.74 8.06 -51.93 -0.42 0.33 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 40 H 0.40 4.42 4.63 -40.82 -0.19 4.23 16 41 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.19 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -34.59 360.15 -8.51 -43.10 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -5.21 Total: 12.66 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -1.00 Total: 8.97 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.79 Total: -60.58 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.17 Total: -22.79 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -4.72 Total: 13.59 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.40 Total: -0.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.59 -8.51 -43.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731835310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.534 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds