Wall clock time and date at job start Tue Mar 31 2020 20:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00138 * 2 1 4 4 H 1.48507 * 109.46754 * 269.99541 * 3 2 1 5 5 H 1.48495 * 109.47248 * 29.99093 * 3 2 1 6 6 H 1.48493 * 109.47168 * 149.99820 * 3 2 1 7 7 C 1.38950 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00076 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00071 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00334 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99647 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00300 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.47187 * 180.02562 * 12 10 9 14 14 C 1.47446 * 111.00031 * 55.55885 * 13 12 10 15 15 C 1.54320 * 107.23418 * 123.25942 * 14 13 12 16 16 C 1.55266 * 103.08265 * 22.20449 * 15 14 13 17 17 C 1.47842 * 111.00303 * 176.40270 * 13 12 10 18 18 H 1.08997 * 110.37101 * 332.57668 * 17 13 12 19 19 C 1.53002 * 110.37257 * 94.80376 * 17 13 12 20 20 N 1.46500 * 109.47455 * 298.45015 * 19 17 13 21 21 C 1.34772 * 120.00052 * 173.45599 * 20 19 17 22 22 O 1.21619 * 120.00100 * 0.02562 * 21 20 19 23 23 C 1.47260 * 119.99941 * 180.02562 * 21 20 19 24 24 N 1.30552 * 125.54318 * 180.02562 * 23 21 20 25 25 C 1.30696 * 115.90903 * 180.02562 * 24 23 21 26 26 C 1.34232 * 115.78270 * 359.97438 * 25 24 23 27 27 S 1.71067 * 109.09133 * 0.02562 * 26 25 24 28 28 H 0.97001 * 119.99685 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00289 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47152 * 60.00065 * 12 10 9 31 31 H 1.09006 * 109.47049 * 299.99950 * 12 10 9 32 32 H 1.08994 * 109.89075 * 242.66555 * 14 13 12 33 33 H 1.08997 * 109.88479 * 3.69261 * 14 13 12 34 34 H 1.08994 * 110.71116 * 140.66417 * 15 14 13 35 35 H 1.09001 * 110.70587 * 263.72672 * 15 14 13 36 36 H 1.09000 * 111.08695 * 206.38733 * 16 15 14 37 37 H 1.08999 * 110.94550 * 82.53695 * 16 15 14 38 38 H 1.09001 * 109.46902 * 178.44445 * 19 17 13 39 39 H 1.08999 * 109.47124 * 58.45165 * 19 17 13 40 40 H 0.97005 * 119.99528 * 353.46031 * 20 19 17 41 41 H 1.08001 * 122.10887 * 179.72996 * 25 24 23 42 42 H 1.08004 * 125.45122 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4002 5 1 1.4456 2.6527 0.6998 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0021 11 8 3.4473 -3.4210 0.0021 12 6 5.5607 -2.3706 0.0021 13 7 6.0504 -3.7556 0.0027 14 6 5.4925 -4.5138 -1.1322 15 6 6.6839 -5.0671 -1.9421 16 6 7.8415 -5.0695 -0.9073 17 6 7.5257 -3.7960 -0.0838 18 1 7.9001 -2.9100 -0.5965 19 6 8.1387 -3.9001 1.3142 20 7 7.7693 -2.7192 2.0986 21 6 8.0865 -2.6530 3.4067 22 8 8.6797 -3.5733 3.9360 23 6 7.7148 -1.4661 4.1953 24 7 7.9670 -1.2883 5.4638 25 6 7.5499 -0.1607 5.9764 26 6 6.9170 0.6667 5.1299 27 16 6.8573 -0.0562 3.5806 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3633 0.0014 30 1 5.9241 -1.8560 0.8916 31 1 5.9241 -1.8576 -0.8884 32 1 4.8807 -5.3369 -0.7633 33 1 4.8898 -3.8552 -1.7575 34 1 6.4761 -6.0786 -2.2911 35 1 6.9171 -4.4117 -2.7812 36 1 8.8094 -4.9848 -1.4015 37 1 7.8017 -5.9600 -0.2801 38 1 9.2241 -3.9567 1.2317 39 1 7.7647 -4.7965 1.8090 40 1 7.2965 -1.9850 1.6763 41 1 7.7013 0.0878 7.0165 42 1 6.5098 1.6337 5.3862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731835310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:09 Heat of formation + Delta-G solvation = -28.066847 kcal Electronic energy + Delta-G solvation = -27215.615858 eV Core-core repulsion = 23322.127441 eV Total energy + Delta-G solvation = -3893.488417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45674 -40.91364 -40.04369 -39.19196 -36.09766 -35.77340 -33.79903 -33.14393 -32.05298 -30.88368 -28.47792 -27.78095 -26.17252 -25.39412 -23.08236 -22.18437 -21.61321 -21.24633 -20.68590 -20.14365 -19.84500 -18.02868 -17.77788 -17.36774 -17.05218 -16.76137 -16.61284 -16.43225 -15.97237 -15.76279 -15.30222 -15.19917 -15.07783 -14.70243 -14.50529 -14.42342 -14.18222 -13.88485 -13.53090 -13.19112 -12.99806 -12.89367 -12.63833 -12.39700 -12.34191 -12.20648 -11.99526 -11.94233 -11.62118 -11.54551 -11.44724 -10.82402 -10.79531 -10.41889 -10.29744 -10.22385 -9.95862 -9.26475 -8.39306 -6.00552 -0.86620 0.06373 0.54769 1.25827 1.29794 1.36808 1.45913 1.70019 1.94644 2.09568 2.24934 2.59955 3.07647 3.15709 3.30947 3.69031 3.74127 3.81313 3.96520 4.11323 4.23686 4.24493 4.26080 4.31153 4.33006 4.37372 4.61353 4.65258 4.80759 4.96024 4.99180 5.04170 5.14494 5.16708 5.27516 5.41776 5.54059 5.90297 5.98441 6.08550 6.11705 6.54335 6.60382 6.88824 6.89553 7.39703 7.96523 8.78260 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.007543 B = 0.005172 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3711.187320 B = 5412.641387 C = 8571.522037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.957 3.043 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.220 1.220 7 C -0.325 4.325 8 H 0.053 0.947 9 N -0.588 5.588 10 C 0.449 3.551 11 O -0.604 6.604 12 C 0.048 3.952 13 N -0.528 5.528 14 C 0.063 3.937 15 C -0.135 4.135 16 C -0.108 4.108 17 C 0.057 3.943 18 H 0.092 0.908 19 C 0.137 3.863 20 N -0.703 5.703 21 C 0.593 3.407 22 O -0.548 6.548 23 C -0.050 4.050 24 N -0.434 5.434 25 C 0.009 3.991 26 C -0.240 4.240 27 S 0.222 5.778 28 H 0.278 0.722 29 H 0.390 0.610 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.403 0.597 41 H 0.207 0.793 42 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.214 5.061 0.759 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.213 4.213 3 Si 0.776 3.224 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.143 1.143 7 C -0.454 4.454 8 H 0.071 0.929 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.487 6.487 12 C -0.084 4.084 13 N -0.253 5.253 14 C -0.064 4.064 15 C -0.174 4.174 16 C -0.146 4.146 17 C -0.051 4.051 18 H 0.110 0.890 19 C 0.014 3.986 20 N -0.358 5.358 21 C 0.376 3.624 22 O -0.425 6.425 23 C -0.324 4.324 24 N -0.151 5.151 25 C -0.147 4.147 26 C -0.381 4.381 27 S 0.475 5.525 28 H 0.088 0.912 29 H 0.225 0.775 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.241 0.759 41 H 0.223 0.777 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 21.756 3.402 0.869 22.038 hybrid contribution -0.729 1.713 0.407 1.906 sum 21.027 5.115 1.276 21.678 Atomic orbital electron populations 1.69814 1.08284 1.29207 1.50311 1.26118 0.96406 1.02741 0.96047 0.85490 0.80041 0.76731 0.80148 1.18136 1.20194 1.14291 1.18952 0.81404 0.94819 1.50263 0.92879 1.41975 1.05773 1.07416 1.67802 1.20722 0.90554 0.83530 0.81574 1.90580 1.71106 1.32540 1.54503 1.22149 0.90872 0.92051 1.03328 1.63159 1.06622 1.10666 1.44855 1.22524 0.96608 0.97227 0.90081 1.22854 0.94025 1.02454 0.98047 1.22675 0.99484 0.96103 0.96364 1.23035 0.86296 1.01194 0.94577 0.89018 1.21618 1.00168 0.86934 0.89874 1.45914 1.58924 1.22645 1.08306 1.16922 0.79131 0.84326 0.82039 1.90803 1.42061 1.38489 1.71167 1.27361 1.08960 1.01265 0.94769 1.66602 1.18092 1.21351 1.09097 1.22305 1.00196 0.88279 1.03932 1.27333 1.05986 1.08155 0.96624 1.83827 1.48048 1.09364 1.11225 0.91228 0.77479 0.88211 0.89097 0.93289 0.94709 0.89905 0.90002 0.87107 0.90476 0.88437 0.91871 0.75861 0.77658 0.75962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.09 13.96 21.66 0.30 -54.79 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.96 35.97 27.74 68.60 1.90 37.88 16 4 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.22 -6.50 6.52 99.48 0.65 -5.85 16 7 C -0.33 -18.33 10.16 84.04 0.85 -17.47 16 8 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 9 N -0.59 -25.99 5.09 -306.98 -1.56 -27.55 16 10 C 0.45 19.13 7.10 87.66 0.62 19.76 16 11 O -0.60 -32.14 13.97 -3.07 -0.04 -32.19 16 12 C 0.05 1.33 5.03 85.56 0.43 1.76 16 13 N -0.53 -14.59 4.70 -865.20 -4.07 -18.66 16 14 C 0.06 1.88 5.14 86.65 0.45 2.32 16 15 C -0.14 -2.52 6.94 31.82 0.22 -2.30 16 16 C -0.11 -1.59 6.51 32.02 0.21 -1.38 16 17 C 0.06 1.03 2.68 45.39 0.12 1.15 16 18 H 0.09 1.19 7.72 -2.39 -0.02 1.17 16 19 C 0.14 2.78 5.39 86.38 0.47 3.25 16 20 N -0.70 -15.98 5.34 -466.54 -2.49 -18.47 16 21 C 0.59 17.24 7.81 86.62 0.68 17.92 16 22 O -0.55 -19.96 17.05 -4.09 -0.07 -20.03 16 23 C -0.05 -1.32 7.46 87.26 0.65 -0.67 16 24 N -0.43 -12.03 10.59 -190.32 -2.02 -14.05 16 25 C 0.01 0.17 11.24 83.95 0.94 1.12 16 26 C -0.24 -3.58 11.09 66.90 0.74 -2.84 16 27 S 0.22 4.05 22.31 -56.49 -1.26 2.79 16 28 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.39 13.80 5.76 -92.71 -0.53 13.27 16 30 H 0.10 2.32 5.35 -2.39 -0.01 2.30 16 31 H 0.09 1.92 8.00 -2.38 -0.02 1.90 16 32 H 0.05 1.77 8.00 -2.39 -0.02 1.75 16 33 H 0.03 1.19 6.61 -2.39 -0.02 1.18 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.24 8.06 -2.39 -0.02 1.22 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.60 8.11 -2.39 -0.02 1.58 16 40 H 0.40 7.77 4.63 -92.70 -0.43 7.35 16 41 H 0.21 2.59 8.06 -2.91 -0.02 2.56 16 42 H 0.22 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -85.60 360.15 -2.40 -88.00 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.06 Total: 34.76 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 6.85 Total: 22.30 kcal Atomic # 7 Polarization: -123.67 SS G_CDS: -9.84 Total: -133.51 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -0.11 Total: -52.21 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 1.90 Total: 37.88 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.26 Total: 2.79 kcal Total: -85.60 -2.40 -88.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731835310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.930 kcal (2) G-P(sol) polarization free energy of solvation -85.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds