Wall clock time and date at job start Tue Mar 31 2020 20:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47305 * 270.00274 * 3 2 1 5 5 H 1.48504 * 109.46816 * 29.99973 * 3 2 1 6 6 H 1.48498 * 109.46959 * 149.99930 * 3 2 1 7 7 C 1.38799 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99641 * 359.97438 * 7 2 1 9 9 S 1.76195 * 119.99978 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99987 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47198 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00404 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99618 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99750 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47364 * 180.02562 * 14 13 11 16 16 N 1.46500 * 109.47364 * 179.97438 * 15 14 13 17 17 C 1.34779 * 120.00169 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99922 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00037 * 180.02562 * 17 16 15 20 20 C 1.53006 * 109.46866 * 180.02562 * 19 17 16 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 19 17 22 22 N 1.31801 * 119.12215 * 269.73180 * 21 20 19 23 23 C 1.32335 * 120.81552 * 179.76366 * 22 21 20 24 24 C 1.38590 * 119.10544 * 0.49753 * 23 22 21 25 25 C 1.38597 * 118.40108 * 359.75909 * 24 23 22 26 26 N 1.31795 * 119.12448 * 90.00034 * 21 20 19 27 27 H 0.97009 * 120.00154 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47060 * 59.99729 * 10 9 7 29 29 H 1.09004 * 109.46955 * 299.99812 * 10 9 7 30 30 H 0.97003 * 120.00717 * 0.02562 * 13 11 10 31 31 H 1.08992 * 109.47324 * 60.00066 * 14 13 11 32 32 H 1.09004 * 109.47042 * 300.00299 * 14 13 11 33 33 H 1.09004 * 109.47694 * 59.99746 * 15 14 13 34 34 H 1.09004 * 109.46785 * 299.99845 * 15 14 13 35 35 H 0.96996 * 119.99986 * 359.97438 * 16 15 14 36 36 H 1.09000 * 109.47247 * 60.00371 * 19 17 16 37 37 H 1.09001 * 109.47358 * 299.99798 * 19 17 16 38 38 H 1.08993 * 109.46955 * 300.00219 * 20 19 17 39 39 H 1.09000 * 109.47050 * 60.00048 * 20 19 17 40 40 H 1.08001 * 120.44769 * 180.23152 * 23 22 21 41 41 H 1.08002 * 120.80185 * 179.77126 * 24 23 22 42 42 H 1.08002 * 120.44883 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9844 -0.0001 11 6 5.5731 -3.2324 -0.0002 12 8 6.3441 -2.2962 0.0003 13 7 6.0456 -4.4946 0.0001 14 6 7.4907 -4.7357 -0.0006 15 6 7.7564 -6.2424 -0.0007 16 7 9.2014 -6.4835 -0.0020 17 6 9.6741 -7.7456 -0.0018 18 8 8.9031 -8.6819 -0.0010 19 6 11.1606 -7.9936 -0.0026 20 6 11.4262 -9.5004 -0.0028 21 6 12.9127 -9.7484 -0.0042 22 7 13.5434 -9.8592 -1.1562 23 6 14.8488 -10.0724 -1.1965 24 6 15.5499 -10.1892 -0.0067 25 6 14.8511 -10.0720 1.1844 26 7 13.5464 -9.8539 1.1465 27 1 -0.4851 0.8401 -0.0004 28 1 3.6440 -3.4313 -0.8904 29 1 3.6434 -3.4317 0.8896 30 1 5.4291 -5.2434 0.0000 31 1 7.9341 -4.2883 0.8889 32 1 7.9331 -4.2890 -0.8911 33 1 7.3131 -6.6896 -0.8905 34 1 7.3139 -6.6894 0.8895 35 1 9.8180 -5.7347 -0.0030 36 1 11.6040 -7.5463 0.8870 37 1 11.6030 -7.5469 -0.8930 38 1 10.9837 -9.9475 0.8873 39 1 10.9828 -9.9474 -0.8926 40 1 15.3603 -10.1586 -2.1438 41 1 16.6152 -10.3670 -0.0077 42 1 15.3645 -10.1571 2.1308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001740481237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:31 Heat of formation + Delta-G solvation = -33.333562 kcal Electronic energy + Delta-G solvation = -24054.734022 eV Core-core repulsion = 20161.017223 eV Total energy + Delta-G solvation = -3893.716799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59822 -40.14703 -39.30289 -36.15421 -34.75166 -34.26221 -34.06492 -32.44931 -31.59618 -30.35945 -28.30779 -26.07868 -25.60426 -25.11097 -23.24307 -22.44443 -21.00426 -20.37727 -18.11452 -18.09039 -17.83526 -17.13461 -16.71623 -16.39838 -16.05150 -15.83064 -15.62254 -15.59379 -15.26190 -14.95755 -14.63089 -14.24292 -14.13064 -13.80678 -13.49618 -13.36965 -13.28263 -12.80932 -12.64391 -12.47138 -12.10557 -11.79766 -11.63826 -11.42688 -11.38153 -11.28200 -11.01908 -10.63952 -10.39010 -10.06723 -9.87420 -9.79474 -9.62410 -9.52110 -9.12174 -9.00679 -8.52500 -6.93783 -6.29825 -4.02048 0.28998 0.51490 2.24707 2.43069 2.84273 2.89499 3.17887 3.29702 3.32559 3.44850 3.49342 3.59824 3.69258 4.02374 4.22286 4.32020 4.37175 4.44939 4.50603 4.59592 4.60227 4.72034 4.76505 4.87482 5.05924 5.09272 5.11903 5.11951 5.26445 5.47419 5.54377 5.56376 5.64623 5.74366 5.83650 5.95224 5.99344 6.38413 6.42589 7.02432 7.49153 7.53544 7.79518 7.93125 8.39287 8.41029 9.16219 10.79393 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.043196 B = 0.001307 C = 0.001287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.055546 B =21413.957533 C =21758.825887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.735 5.735 14 C 0.111 3.889 15 C 0.108 3.892 16 N -0.728 5.728 17 C 0.519 3.481 18 O -0.536 6.536 19 C -0.131 4.131 20 C -0.037 4.037 21 C 0.321 3.679 22 N -0.515 5.515 23 C 0.150 3.850 24 C -0.235 4.235 25 C 0.150 3.850 26 N -0.515 5.515 27 H 0.271 0.729 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.403 0.597 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.404 0.596 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.170 0.830 41 H 0.149 0.851 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.926 -21.962 0.071 38.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.390 5.390 14 C -0.014 4.014 15 C -0.016 4.016 16 N -0.381 5.381 17 C 0.306 3.694 18 O -0.412 6.412 19 C -0.172 4.172 20 C -0.077 4.077 21 C 0.054 3.946 22 N -0.229 5.229 23 C -0.016 4.016 24 C -0.257 4.257 25 C -0.016 4.016 26 N -0.229 5.229 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.237 0.763 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.239 0.761 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.187 0.813 41 H 0.166 0.834 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 31.492 -20.816 0.077 37.750 hybrid contribution 0.342 -0.469 -0.037 0.582 sum 31.834 -21.286 0.039 38.295 Atomic orbital electron populations 1.69939 1.05924 1.27782 1.47995 1.24707 0.94436 0.98946 0.93148 0.86738 0.81882 0.83306 0.79933 1.19200 1.19915 1.15948 1.22318 0.88215 0.97583 1.58881 0.89333 1.84780 1.09378 0.99928 1.97445 1.23279 0.93689 1.04510 1.06021 1.20295 0.90720 0.81996 0.75062 1.90704 1.58776 1.42148 1.47607 1.45764 1.06772 1.08455 1.78032 1.21330 0.82804 0.94096 1.03165 1.21465 0.81339 0.95341 1.03469 1.45790 1.07873 1.08230 1.76161 1.20474 0.90809 0.82490 0.75675 1.90744 1.59174 1.42320 1.48950 1.21540 0.93122 0.97360 1.05188 1.20132 0.85896 0.95538 1.06102 1.23222 0.97622 0.90319 0.83476 1.68315 1.10347 1.13783 1.30491 1.23306 0.89663 0.89657 0.98980 1.22957 1.03251 1.04436 0.95009 1.23308 0.89692 0.89645 0.98960 1.68311 1.10270 1.13789 1.30565 0.91920 0.88317 0.88267 0.76279 0.90885 0.90900 0.90518 0.90510 0.76105 0.88273 0.88285 0.88135 0.88137 0.81333 0.83361 0.81332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.46 13.97 55.49 0.78 -25.69 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.63 27.74 -169.99 -4.71 16.92 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 7 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 10 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 11 C 0.53 9.04 7.85 -10.99 -0.09 8.95 16 12 O -0.52 -10.73 15.86 5.56 0.09 -10.64 16 13 N -0.73 -8.58 5.56 -60.30 -0.34 -8.92 16 14 C 0.11 1.05 5.79 -4.04 -0.02 1.03 16 15 C 0.11 0.86 5.79 -4.04 -0.02 0.84 16 16 N -0.73 -5.02 5.56 -60.29 -0.33 -5.36 16 17 C 0.52 4.41 7.83 -10.99 -0.09 4.32 16 18 O -0.54 -6.60 15.98 5.56 0.09 -6.51 16 19 C -0.13 -0.80 5.68 -27.88 -0.16 -0.95 16 20 C -0.04 -0.28 4.94 -27.88 -0.14 -0.42 16 21 C 0.32 2.57 6.90 -157.19 -1.08 1.49 16 22 N -0.52 -4.02 10.34 -10.73 -0.11 -4.13 16 23 C 0.15 0.74 11.30 -17.20 -0.19 0.55 16 24 C -0.23 -0.84 10.17 -39.32 -0.40 -1.24 16 25 C 0.15 0.74 11.30 -17.20 -0.19 0.55 16 26 N -0.52 -4.02 10.33 -10.72 -0.11 -4.13 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 29 H 0.10 1.73 8.14 -51.91 -0.42 1.30 16 30 H 0.40 3.62 8.47 -40.82 -0.35 3.28 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.40 1.82 8.47 -40.82 -0.35 1.47 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.17 0.32 8.06 -52.49 -0.42 -0.11 16 41 H 0.15 0.07 8.06 -52.49 -0.42 -0.35 16 42 H 0.17 0.32 8.06 -52.49 -0.42 -0.11 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -38.43 382.88 -8.59 -47.02 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.76 Total: 0.14 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.95 Total: 1.06 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.12 Total: -48.22 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.18 Total: -17.16 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.43 -8.59 -47.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740481237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.690 kcal (2) G-P(sol) polarization free energy of solvation -38.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds