Wall clock time and date at job start Tue Mar 31 2020 21:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47445 * 2 1 4 4 C 1.53001 * 109.47306 * 119.99881 * 2 1 3 5 5 C 1.52997 * 109.47204 * 174.99825 * 4 2 1 6 6 H 1.08999 * 109.47365 * 55.00444 * 5 4 2 7 7 N 1.46498 * 109.47380 * 294.99803 * 5 4 2 8 8 C 1.34784 * 119.99843 * 84.99984 * 7 5 4 9 9 O 1.21559 * 119.99780 * 0.02562 * 8 7 5 10 10 C 1.47778 * 119.99894 * 180.02562 * 8 7 5 11 11 C 1.39623 * 120.12817 * 180.02562 * 10 8 7 12 12 C 1.37892 * 119.86396 * 180.23387 * 11 10 8 13 13 C 1.38510 * 120.13195 * 359.51258 * 12 11 10 14 14 Cl 1.73598 * 119.86612 * 180.21090 * 13 12 11 15 15 C 1.38515 * 120.26688 * 0.47107 * 13 12 11 16 16 C 1.37891 * 120.12598 * 359.78483 * 15 13 12 17 17 C 1.50703 * 109.46868 * 175.00241 * 5 4 2 18 18 O 1.21287 * 120.00194 * 120.00619 * 17 5 4 19 19 N 1.34773 * 119.99859 * 299.99689 * 17 5 4 20 20 C 1.37099 * 120.00249 * 180.02562 * 19 17 5 21 21 H 1.08000 * 119.99766 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00579 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00231 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99542 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47500 * 90.00310 * 24 22 20 26 26 H 1.48508 * 109.47144 * 210.00007 * 24 22 20 27 27 H 1.48501 * 109.47248 * 329.99767 * 24 22 20 28 28 H 1.09004 * 109.46954 * 300.00389 * 1 2 3 29 29 H 1.09003 * 109.47186 * 59.99884 * 1 2 3 30 30 H 1.08997 * 109.47426 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46932 * 240.00127 * 2 1 3 32 32 H 1.08992 * 109.47494 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47024 * 300.00215 * 3 2 1 34 34 H 1.08995 * 109.47201 * 59.99244 * 3 2 1 35 35 H 1.08996 * 109.47037 * 54.99730 * 4 2 1 36 36 H 1.09002 * 109.46966 * 294.99892 * 4 2 1 37 37 H 0.96995 * 120.00276 * 265.00288 * 7 5 4 38 38 H 1.08002 * 120.06404 * 359.95207 * 11 10 8 39 39 H 1.08004 * 119.92952 * 179.72547 * 12 11 10 40 40 H 1.07994 * 119.93603 * 179.77195 * 15 13 12 41 41 H 1.08009 * 120.06279 * 179.97438 * 16 15 13 42 42 H 0.97005 * 120.00077 * 0.02562 * 19 17 5 43 43 H 0.96993 * 119.99537 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9954 0.1611 1.0527 7 7 3.9479 -1.6872 0.0626 8 6 4.0651 -1.1631 -1.1736 9 8 3.8534 0.0201 -1.3546 10 6 4.4511 -2.0269 -2.3088 11 6 4.5738 -1.4866 -3.5904 12 6 4.9295 -2.2986 -4.6467 13 6 5.1747 -3.6455 -4.4364 14 17 5.6274 -4.6603 -5.7702 15 6 5.0549 -4.1871 -3.1672 16 6 4.6948 -3.3862 -2.1041 17 6 4.0773 -1.4303 2.4722 18 8 4.7012 -2.4701 2.4497 19 7 3.8424 -0.8106 3.6458 20 6 4.3090 -1.3554 4.8141 21 1 4.8652 -2.2810 4.7940 22 6 4.0665 -0.7169 6.0241 23 7 4.5133 -1.2394 7.1440 24 14 3.1051 0.8843 6.0588 25 1 1.6574 0.5895 6.2085 26 1 3.5626 1.7117 7.2040 27 1 3.3310 1.6249 4.7916 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6054 -1.7197 1.2952 36 1 1.7517 -0.1582 2.1370 37 1 4.1172 -2.6313 0.2072 38 1 4.3861 -0.4359 -3.7549 39 1 5.0204 -1.8827 -5.6393 40 1 5.2438 -5.2388 -3.0100 41 1 4.6012 -3.8097 -1.1149 42 1 3.3432 0.0209 3.6638 43 1 4.3436 -0.7938 7.9887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126877592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:25 Heat of formation + Delta-G solvation = -61.149403 kcal Electronic energy + Delta-G solvation = -27040.863650 eV Core-core repulsion = 23111.604208 eV Total energy + Delta-G solvation = -3929.259442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.63586 -39.23827 -38.15242 -36.77696 -36.08224 -34.51476 -33.76957 -31.89905 -31.47371 -31.27991 -29.14110 -26.94445 -25.39487 -24.54060 -23.26410 -22.78736 -20.41238 -19.87780 -19.60351 -18.82510 -18.01966 -16.94098 -16.23703 -15.92898 -15.62708 -15.29578 -14.98554 -14.81785 -14.34765 -14.18234 -13.99833 -13.79478 -13.65172 -13.41498 -13.23456 -12.91160 -12.51522 -12.37397 -12.23982 -12.09464 -11.90191 -11.83039 -11.74270 -11.49755 -11.27355 -11.15533 -10.78553 -10.66001 -10.50382 -10.35018 -10.07205 -9.82663 -9.71673 -9.43395 -9.13194 -8.97984 -8.58617 -8.32432 -6.43146 -3.95462 0.41557 0.94808 1.73283 2.65784 2.96796 3.01036 3.08842 3.13399 3.50134 3.59180 4.00934 4.38229 4.44486 4.50760 4.62043 4.91535 4.99380 5.00923 5.09552 5.11661 5.20220 5.24123 5.44060 5.58186 5.65279 5.68953 5.76754 5.81573 5.83171 5.89141 5.94509 5.99917 6.03254 6.09860 6.21797 6.33860 6.36534 6.54279 6.58768 6.69760 7.41627 7.62757 7.98213 8.24867 8.43309 8.79602 9.27606 9.61326 10.69064 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.002824 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.220616 B = 9911.610032 C =11159.045871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.123 4.123 5 C 0.132 3.868 6 H 0.106 0.894 7 N -0.694 5.694 8 C 0.555 3.445 9 O -0.529 6.529 10 C -0.123 4.123 11 C -0.048 4.048 12 C -0.121 4.121 13 C -0.015 4.015 14 Cl -0.068 7.068 15 C -0.117 4.117 16 C -0.071 4.071 17 C 0.441 3.559 18 O -0.578 6.578 19 N -0.574 5.574 20 C -0.309 4.309 21 H 0.122 0.878 22 C 0.046 3.954 23 N -0.874 5.874 24 Si 0.875 3.125 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.266 1.266 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.408 0.592 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.373 0.627 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 -0.386 -21.905 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.162 4.162 5 C 0.023 3.977 6 H 0.124 0.876 7 N -0.347 5.347 8 C 0.342 3.658 9 O -0.408 6.408 10 C -0.127 4.127 11 C -0.067 4.067 12 C -0.140 4.140 13 C -0.042 4.042 14 Cl -0.039 7.039 15 C -0.136 4.136 16 C -0.090 4.090 17 C 0.227 3.773 18 O -0.462 6.462 19 N -0.212 5.212 20 C -0.438 4.438 21 H 0.139 0.861 22 C -0.158 4.158 23 N -0.512 5.512 24 Si 0.701 3.299 25 H -0.193 1.193 26 H -0.199 1.199 27 H -0.192 1.192 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.207 0.793 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.744 -0.324 -21.855 22.176 hybrid contribution -0.566 0.632 0.294 0.898 sum -4.310 0.309 -21.561 21.990 Atomic orbital electron populations 1.21862 0.95985 1.01214 1.01358 1.21162 0.94625 0.97156 0.98167 1.21859 1.02790 0.95012 1.00121 1.22077 0.93550 1.01594 0.98942 1.20868 0.95500 0.95532 0.85753 0.87621 1.45620 1.68824 1.13789 1.06437 1.18084 0.77506 0.87562 0.82653 1.90774 1.50198 1.15399 1.84401 1.20132 1.03970 0.94011 0.94544 1.21246 0.94447 1.00718 0.90335 1.21040 1.01123 0.91511 1.00292 1.21200 1.01685 0.92017 0.89301 1.98384 1.90817 1.68448 1.46275 1.21026 1.00894 1.01094 0.90559 1.21439 0.95655 0.92503 0.99443 1.19623 0.86035 0.87340 0.84341 1.90541 1.44752 1.24652 1.86226 1.42146 1.49690 1.22875 1.06444 1.19438 1.33306 1.09470 0.81558 0.86066 1.25051 0.97495 0.98248 0.95017 1.69613 1.44246 1.39374 0.98016 0.86731 0.80935 0.83451 0.78801 1.19319 1.19909 1.19181 0.92892 0.93062 0.93133 0.90586 0.90756 0.93494 0.93977 0.91095 0.90743 0.75331 0.83579 0.84322 0.84202 0.84126 0.79331 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.19 37.16 0.34 -1.35 16 2 C -0.09 -1.23 2.38 -90.62 -0.22 -1.44 16 3 C -0.14 -1.89 8.03 37.16 0.30 -1.59 16 4 C -0.12 -1.79 4.30 -26.73 -0.11 -1.90 16 5 C 0.13 2.19 2.58 -69.08 -0.18 2.01 16 6 H 0.11 1.77 5.92 -51.93 -0.31 1.46 16 7 N -0.69 -10.24 4.85 -55.90 -0.27 -10.51 16 8 C 0.55 7.69 6.33 -12.36 -0.08 7.61 16 9 O -0.53 -8.12 11.30 5.31 0.06 -8.06 16 10 C -0.12 -1.42 5.87 -104.97 -0.62 -2.03 16 11 C -0.05 -0.49 9.59 -39.19 -0.38 -0.86 16 12 C -0.12 -1.06 9.81 -39.61 -0.39 -1.45 16 13 C -0.02 -0.14 6.33 -39.38 -0.25 -0.39 16 14 Cl -0.07 -0.58 28.95 -51.86 -1.50 -2.08 16 15 C -0.12 -1.06 9.81 -39.61 -0.39 -1.45 16 16 C -0.07 -0.72 9.54 -39.20 -0.37 -1.10 16 17 C 0.44 9.44 7.17 -10.99 -0.08 9.36 16 18 O -0.58 -14.20 15.41 5.55 0.09 -14.12 16 19 N -0.57 -13.07 4.95 -10.96 -0.05 -13.12 16 20 C -0.31 -8.38 10.16 -14.93 -0.15 -8.53 16 21 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 22 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 23 N -0.87 -24.68 13.96 55.50 0.77 -23.91 16 24 Si 0.87 18.75 27.74 -169.99 -4.71 14.03 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.07 5.19 -51.93 -0.27 0.80 16 32 H 0.07 1.10 4.75 -51.93 -0.25 0.86 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.08 7.43 -51.93 -0.39 0.69 16 37 H 0.41 5.85 5.82 -40.82 -0.24 5.62 16 38 H 0.15 1.40 7.65 -52.49 -0.40 1.00 16 39 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.14 1.31 6.40 -52.48 -0.34 0.97 16 42 H 0.37 7.58 5.12 -40.82 -0.21 7.38 16 43 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -30.30 363.44 -8.14 -38.44 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -5.33 Total: 15.83 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.67 Total: -1.99 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.45 Total: -47.54 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.15 Total: -22.17 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.71 Total: 14.03 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.30 -8.14 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126877592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.711 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds