Wall clock time and date at job start Tue Mar 31 2020 21:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47445 * 2 1 4 4 C 1.53001 * 109.47306 * 119.99881 * 2 1 3 5 5 C 1.52997 * 109.47204 * 174.99825 * 4 2 1 6 6 H 1.08999 * 109.47365 * 55.00444 * 5 4 2 7 7 N 1.46498 * 109.47380 * 294.99803 * 5 4 2 8 8 C 1.34784 * 119.99843 * 84.99984 * 7 5 4 9 9 O 1.21559 * 119.99780 * 0.02562 * 8 7 5 10 10 C 1.47778 * 119.99894 * 180.02562 * 8 7 5 11 11 C 1.39623 * 120.12817 * 180.02562 * 10 8 7 12 12 C 1.37892 * 119.86396 * 180.23387 * 11 10 8 13 13 C 1.38510 * 120.13195 * 359.51258 * 12 11 10 14 14 Cl 1.73598 * 119.86612 * 180.21090 * 13 12 11 15 15 C 1.38515 * 120.26688 * 0.47107 * 13 12 11 16 16 C 1.37891 * 120.12598 * 359.78483 * 15 13 12 17 17 C 1.50703 * 109.46868 * 175.00241 * 5 4 2 18 18 O 1.21287 * 120.00194 * 120.00619 * 17 5 4 19 19 N 1.34773 * 119.99859 * 299.99689 * 17 5 4 20 20 C 1.37099 * 120.00249 * 180.02562 * 19 17 5 21 21 H 1.08000 * 119.99766 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00579 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00231 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99542 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47500 * 90.00310 * 24 22 20 26 26 H 1.48508 * 109.47144 * 210.00007 * 24 22 20 27 27 H 1.48501 * 109.47248 * 329.99767 * 24 22 20 28 28 H 1.09004 * 109.46954 * 300.00389 * 1 2 3 29 29 H 1.09003 * 109.47186 * 59.99884 * 1 2 3 30 30 H 1.08997 * 109.47426 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46932 * 240.00127 * 2 1 3 32 32 H 1.08992 * 109.47494 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47024 * 300.00215 * 3 2 1 34 34 H 1.08995 * 109.47201 * 59.99244 * 3 2 1 35 35 H 1.08996 * 109.47037 * 54.99730 * 4 2 1 36 36 H 1.09002 * 109.46966 * 294.99892 * 4 2 1 37 37 H 0.96995 * 120.00276 * 265.00288 * 7 5 4 38 38 H 1.08002 * 120.06404 * 359.95207 * 11 10 8 39 39 H 1.08004 * 119.92952 * 179.72547 * 12 11 10 40 40 H 1.07994 * 119.93603 * 179.77195 * 15 13 12 41 41 H 1.08009 * 120.06279 * 179.97438 * 16 15 13 42 42 H 0.97005 * 120.00077 * 0.02562 * 19 17 5 43 43 H 0.96993 * 119.99537 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9954 0.1611 1.0527 7 7 3.9479 -1.6872 0.0626 8 6 4.0651 -1.1631 -1.1736 9 8 3.8534 0.0201 -1.3546 10 6 4.4511 -2.0269 -2.3088 11 6 4.5738 -1.4866 -3.5904 12 6 4.9295 -2.2986 -4.6467 13 6 5.1747 -3.6455 -4.4364 14 17 5.6274 -4.6603 -5.7702 15 6 5.0549 -4.1871 -3.1672 16 6 4.6948 -3.3862 -2.1041 17 6 4.0773 -1.4303 2.4722 18 8 4.7012 -2.4701 2.4497 19 7 3.8424 -0.8106 3.6458 20 6 4.3090 -1.3554 4.8141 21 1 4.8652 -2.2810 4.7940 22 6 4.0665 -0.7169 6.0241 23 7 4.5133 -1.2394 7.1440 24 14 3.1051 0.8843 6.0588 25 1 1.6574 0.5895 6.2085 26 1 3.5626 1.7117 7.2040 27 1 3.3310 1.6249 4.7916 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6054 -1.7197 1.2952 36 1 1.7517 -0.1582 2.1370 37 1 4.1172 -2.6313 0.2072 38 1 4.3861 -0.4359 -3.7549 39 1 5.0204 -1.8827 -5.6393 40 1 5.2438 -5.2388 -3.0100 41 1 4.6012 -3.8097 -1.1149 42 1 3.3432 0.0209 3.6638 43 1 4.3436 -0.7938 7.9887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126877592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:24 Heat of formation + Delta-G solvation = -79.786046 kcal Electronic energy + Delta-G solvation = -27041.671796 eV Core-core repulsion = 23111.604208 eV Total energy + Delta-G solvation = -3930.067587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78270 -40.46671 -39.43313 -37.56592 -37.19653 -36.25039 -35.14208 -33.84597 -32.38382 -32.08111 -30.34598 -27.93029 -27.12182 -25.70000 -24.31422 -23.71066 -21.54550 -21.31772 -20.93456 -20.49184 -19.24449 -17.94638 -17.44656 -17.24061 -16.97769 -16.70595 -16.08234 -15.93437 -15.56747 -15.36219 -15.27342 -14.84961 -14.75068 -14.52000 -14.49005 -14.33661 -14.15728 -13.59695 -13.38093 -13.12818 -12.99835 -12.92294 -12.60678 -12.58303 -12.46898 -12.44692 -12.04731 -11.86774 -11.84360 -11.62079 -11.56056 -11.39530 -10.92806 -10.57603 -10.31872 -10.16744 -10.09211 -9.80244 -8.45697 -6.07073 -0.40622 0.21442 1.01979 1.29439 1.31819 1.41736 1.69413 1.78829 1.95995 2.19350 2.69154 2.81991 3.09887 3.58936 3.68559 3.81389 3.82526 3.92450 3.99223 4.16141 4.20383 4.24622 4.28597 4.52216 4.58926 4.70568 4.84454 4.88087 4.91089 4.98721 5.02180 5.09614 5.12187 5.14615 5.21925 5.31171 5.37182 5.48429 5.55826 5.60883 5.63935 5.88696 6.46842 6.49311 6.78586 7.12415 7.29660 7.78092 8.70790 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.002824 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.220616 B = 9911.610032 C =11159.045871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.120 4.120 5 C 0.146 3.854 6 H 0.110 0.890 7 N -0.699 5.699 8 C 0.557 3.443 9 O -0.544 6.544 10 C -0.140 4.140 11 C -0.050 4.050 12 C -0.116 4.116 13 C -0.017 4.017 14 Cl -0.059 7.059 15 C -0.118 4.118 16 C -0.075 4.075 17 C 0.447 3.553 18 O -0.612 6.612 19 N -0.576 5.576 20 C -0.329 4.329 21 H 0.064 0.936 22 C -0.006 4.006 23 N -0.925 5.925 24 Si 0.951 3.049 25 H -0.252 1.252 26 H -0.273 1.273 27 H -0.235 1.235 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.410 0.590 38 H 0.150 0.850 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.143 0.857 42 H 0.389 0.611 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.692 1.240 -24.096 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.195 4.195 4 C -0.158 4.158 5 C 0.037 3.963 6 H 0.128 0.872 7 N -0.352 5.352 8 C 0.346 3.654 9 O -0.423 6.423 10 C -0.143 4.143 11 C -0.069 4.069 12 C -0.134 4.134 13 C -0.044 4.044 14 Cl -0.030 7.030 15 C -0.136 4.136 16 C -0.094 4.094 17 C 0.234 3.766 18 O -0.498 6.498 19 N -0.215 5.215 20 C -0.458 4.458 21 H 0.082 0.918 22 C -0.206 4.206 23 N -0.565 5.565 24 Si 0.771 3.229 25 H -0.176 1.176 26 H -0.198 1.198 27 H -0.158 1.158 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.248 0.752 38 H 0.168 0.832 39 H 0.179 0.821 40 H 0.174 0.826 41 H 0.161 0.839 42 H 0.225 0.775 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.362 1.297 -24.087 24.711 hybrid contribution 0.043 -0.030 0.857 0.858 sum -5.319 1.267 -23.231 23.865 Atomic orbital electron populations 1.21828 0.94329 1.01756 1.02175 1.21090 0.95915 0.96753 0.96752 1.21824 1.01671 0.95149 1.00899 1.22088 0.91586 1.02043 1.00128 1.20696 0.96911 0.95230 0.83449 0.87231 1.45639 1.69465 1.13632 1.06420 1.18400 0.76718 0.87661 0.82646 1.90761 1.50870 1.16114 1.84599 1.20021 1.05853 0.94283 0.94193 1.21329 0.94373 1.01111 0.90059 1.21255 1.00017 0.91234 1.00912 1.21350 1.01105 0.92370 0.89563 1.98392 1.90667 1.68209 1.45771 1.21215 1.00276 1.01840 0.90290 1.21492 0.95721 0.92170 0.99996 1.20574 0.84141 0.86396 0.85531 1.90525 1.45818 1.26343 1.87122 1.41952 1.50390 1.23615 1.05563 1.19021 1.34274 1.08520 0.83937 0.91783 1.26014 0.98232 1.02593 0.93784 1.69775 1.46004 1.41707 0.99004 0.85559 0.79474 0.77711 0.80179 1.17639 1.19792 1.15807 0.92270 0.92061 0.92786 0.91497 0.92427 0.92933 0.92981 0.91124 0.90158 0.75216 0.83232 0.82080 0.82567 0.83940 0.77513 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.19 71.98 0.66 -2.25 16 2 C -0.09 -2.11 2.38 -10.79 -0.03 -2.14 16 3 C -0.14 -3.38 8.03 71.98 0.58 -2.80 16 4 C -0.12 -3.29 4.30 30.59 0.13 -3.16 16 5 C 0.15 4.74 2.58 44.25 0.11 4.86 16 6 H 0.11 3.55 5.92 -2.39 -0.01 3.54 16 7 N -0.70 -20.49 4.85 -449.04 -2.18 -22.67 16 8 C 0.56 15.11 6.33 86.77 0.55 15.66 16 9 O -0.54 -16.19 11.30 -3.90 -0.04 -16.23 16 10 C -0.14 -3.11 5.87 -20.09 -0.12 -3.23 16 11 C -0.05 -0.93 9.59 22.52 0.22 -0.71 16 12 C -0.12 -1.78 9.81 22.25 0.22 -1.56 16 13 C -0.02 -0.27 6.33 22.40 0.14 -0.13 16 14 Cl -0.06 -0.88 28.95 -2.72 -0.08 -0.96 16 15 C -0.12 -1.96 9.81 22.25 0.22 -1.74 16 16 C -0.07 -1.46 9.54 22.52 0.21 -1.24 16 17 C 0.45 19.36 7.17 87.66 0.63 19.99 16 18 O -0.61 -31.26 15.41 -3.05 -0.05 -31.31 16 19 N -0.58 -26.30 4.95 -306.99 -1.52 -27.82 16 20 C -0.33 -18.49 10.16 84.04 0.85 -17.63 16 21 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 22 C -0.01 -0.33 5.50 84.93 0.47 0.14 16 23 N -0.93 -54.02 13.96 21.66 0.30 -53.72 16 24 Si 0.95 37.72 27.74 68.60 1.90 39.62 16 25 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 26 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 27 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.78 5.19 -2.39 -0.01 1.76 16 32 H 0.06 1.61 4.75 -2.39 -0.01 1.60 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.08 2.12 7.43 -2.39 -0.02 2.11 16 37 H 0.41 11.89 5.82 -92.71 -0.54 11.35 16 38 H 0.15 2.66 7.65 -2.91 -0.02 2.64 16 39 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 40 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.14 2.64 6.40 -2.91 -0.02 2.62 16 42 H 0.39 15.15 5.12 -92.70 -0.47 14.67 16 43 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -68.41 363.44 3.18 -65.22 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: 0.00 Total: 43.82 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 4.85 Total: 4.04 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -3.40 Total: -104.20 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -0.09 Total: -47.53 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 1.90 Total: 39.62 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -68.41 3.18 -65.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126877592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.561 kcal (2) G-P(sol) polarization free energy of solvation -68.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds