Wall clock time and date at job start Tue Mar 31 2020 21:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47302 * 299.99971 * 16 14 13 18 18 C 1.53001 * 109.46988 * 59.99963 * 16 14 13 19 19 N 1.46506 * 109.47414 * 179.97438 * 16 14 13 20 20 C 1.34770 * 120.00177 * 154.99892 * 19 16 14 21 21 O 1.21560 * 120.00111 * 0.02562 * 20 19 16 22 22 C 1.47784 * 120.00218 * 180.02562 * 20 19 16 23 23 C 1.39622 * 120.12871 * 359.72086 * 22 20 19 24 24 C 1.37886 * 119.86548 * 179.78869 * 23 22 20 25 25 C 1.38516 * 120.13477 * 0.47084 * 24 23 22 26 26 Cl 1.73598 * 119.86991 * 179.76401 * 25 24 23 27 27 C 1.38510 * 120.26011 * 359.78724 * 25 24 23 28 28 C 1.37895 * 120.13367 * 359.97438 * 27 25 24 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 35 35 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 36 36 H 1.08993 * 109.47148 * 60.00540 * 18 16 14 37 37 H 1.09005 * 109.47217 * 179.97438 * 18 16 14 38 38 H 1.08998 * 109.47361 * 299.99673 * 18 16 14 39 39 H 0.97003 * 119.99246 * 335.00396 * 19 16 14 40 40 H 1.08000 * 120.06237 * 0.02562 * 23 22 20 41 41 H 1.08006 * 119.93495 * 180.20953 * 24 23 22 42 42 H 1.08001 * 119.93126 * 179.97438 * 27 25 24 43 43 H 1.07999 * 120.06623 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.7280 4.1542 -2.8665 18 6 0.0806 2.3224 -3.7971 19 7 -1.3224 3.8708 -2.5267 20 6 -1.7146 4.9084 -3.2921 21 8 -0.9408 5.4025 -4.0888 22 6 -3.0853 5.4454 -3.1630 23 6 -3.9782 4.8762 -2.2530 24 6 -5.2544 5.3844 -2.1338 25 6 -5.6545 6.4512 -2.9216 26 17 -7.2648 7.0817 -2.7703 27 6 -4.7748 7.0166 -3.8300 28 6 -3.4944 6.5202 -3.9546 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8293 -0.0605 2.9501 35 1 2.2718 2.1232 -1.9978 36 1 -0.6108 1.5070 -3.5850 37 1 -0.2081 2.8100 -4.7283 38 1 1.0915 1.9262 -3.8923 39 1 -1.9400 3.4762 -1.8911 40 1 -3.6685 4.0420 -1.6409 41 1 -5.9449 4.9471 -1.4278 42 1 -5.0925 7.8480 -4.4418 43 1 -2.8096 6.9616 -4.6635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183853091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:42 Heat of formation + Delta-G solvation = -82.018052 kcal Electronic energy + Delta-G solvation = -26426.397602 eV Core-core repulsion = 22496.233228 eV Total energy + Delta-G solvation = -3930.164374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67264 -40.68430 -39.44825 -37.47757 -37.12541 -36.00580 -34.40462 -33.25367 -32.41990 -32.12216 -30.84336 -28.82926 -26.05596 -25.14231 -24.33865 -23.75643 -22.06616 -21.45876 -21.08035 -19.83122 -18.62339 -17.91056 -17.61993 -17.07197 -16.88237 -16.55016 -16.32261 -15.98475 -15.89378 -15.68094 -14.99539 -14.67864 -14.61042 -14.53486 -14.44145 -14.18177 -13.54210 -13.38100 -13.31717 -13.26211 -13.15264 -12.90014 -12.66744 -12.64532 -12.60792 -12.48917 -12.16717 -12.02824 -11.87412 -11.55225 -11.21773 -11.04486 -10.76586 -10.51665 -10.29084 -10.18770 -9.84212 -9.65764 -8.15474 -6.32106 -0.44951 0.19292 1.00644 1.46013 1.46932 1.54392 1.61191 1.73120 1.83539 2.38235 2.61623 2.67926 3.14300 3.52998 3.65985 3.79862 3.82272 4.04523 4.13248 4.13667 4.23210 4.49620 4.53600 4.60957 4.64863 4.77417 4.79791 4.86494 4.99486 5.07595 5.09083 5.16865 5.17119 5.22537 5.31107 5.46153 5.56977 5.58009 5.61137 5.81526 5.91914 6.18909 6.36994 6.75167 6.88542 7.03989 7.32645 7.49646 8.89221 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.002137 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.615501 B =13101.959927 C =13571.984136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.001 0.999 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.966 3.034 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.697 5.697 14 C 0.500 3.500 15 O -0.575 6.575 16 C 0.131 3.869 17 H 0.111 0.889 18 C -0.150 4.150 19 N -0.700 5.700 20 C 0.562 3.438 21 O -0.568 6.568 22 C -0.144 4.144 23 C -0.070 4.070 24 C -0.117 4.117 25 C -0.016 4.016 26 Cl -0.058 7.058 27 C -0.116 4.116 28 C -0.052 4.052 29 H 0.027 0.973 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.413 0.587 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.915 8.959 -13.267 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.019 0.981 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.345 5.345 14 C 0.286 3.714 15 O -0.456 6.456 16 C 0.022 3.978 17 H 0.129 0.871 18 C -0.208 4.208 19 N -0.353 5.353 20 C 0.351 3.649 21 O -0.448 6.448 22 C -0.147 4.147 23 C -0.089 4.089 24 C -0.136 4.136 25 C -0.043 4.043 26 Cl -0.029 7.029 27 C -0.134 4.134 28 C -0.071 4.071 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.252 0.748 40 H 0.166 0.834 41 H 0.177 0.823 42 H 0.179 0.821 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.008 9.206 -12.945 23.272 hybrid contribution 0.913 -0.230 0.643 1.140 sum -16.095 8.976 -12.302 22.157 Atomic orbital electron populations 1.21679 0.96688 0.99223 1.00452 1.21777 0.94026 0.98886 1.01342 1.18393 0.93497 0.89321 0.81137 0.98081 1.21558 0.91611 1.38926 1.06673 0.91116 1.25706 1.02988 0.94469 0.95123 1.70028 1.36973 1.38290 1.09788 0.85488 0.79541 0.78335 0.77513 1.19894 1.21318 1.18966 1.46195 1.15144 1.55412 1.17775 1.20796 0.82467 0.78809 0.89337 1.90650 1.52263 1.61050 1.41630 1.20790 0.85619 0.98230 0.93157 0.87146 1.22074 1.04302 0.97862 0.96577 1.45678 1.14076 1.33934 1.41646 1.18460 0.87629 0.78889 0.79968 1.90753 1.55410 1.60495 1.38136 1.19983 0.93307 1.00069 1.01380 1.21493 0.92578 0.98947 0.95898 1.21247 0.96702 0.95711 0.99891 1.21374 0.87436 0.96818 0.98655 1.98397 1.21313 1.86127 1.97097 1.21253 0.92203 1.01329 0.98644 1.21329 0.95697 0.93292 0.96758 0.95393 0.93721 0.93304 0.91160 0.93961 0.92635 0.76020 0.91533 0.90666 0.89381 0.74802 0.83430 0.82309 0.82077 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 8.51 71.98 0.61 -4.46 16 2 C -0.12 -5.62 5.45 30.59 0.17 -5.45 16 3 C 0.28 13.52 2.24 44.24 0.10 13.62 16 4 H 0.00 0.08 7.58 -2.38 -0.02 0.06 16 5 C -0.55 -27.98 8.73 25.60 0.22 -27.75 16 6 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -50.74 11.29 21.45 0.24 -50.50 16 9 Si 0.97 41.20 29.54 68.60 2.03 43.22 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 13 N -0.70 -26.37 4.91 -446.09 -2.19 -28.56 16 14 C 0.50 17.71 5.79 87.66 0.51 18.21 16 15 O -0.58 -23.87 12.98 -3.03 -0.04 -23.91 16 16 C 0.13 3.58 2.99 44.24 0.13 3.72 16 17 H 0.11 3.10 7.58 -2.39 -0.02 3.09 16 18 C -0.15 -3.33 9.38 71.98 0.68 -2.65 16 19 N -0.70 -18.00 4.90 -449.04 -2.20 -20.20 16 20 C 0.56 14.63 7.74 86.77 0.67 15.30 16 21 O -0.57 -17.75 16.01 -3.91 -0.06 -17.81 16 22 C -0.14 -3.01 5.87 -20.09 -0.12 -3.13 16 23 C -0.07 -1.21 9.54 22.52 0.21 -0.99 16 24 C -0.12 -1.73 9.81 22.25 0.22 -1.52 16 25 C -0.02 -0.24 6.33 22.40 0.14 -0.10 16 26 Cl -0.06 -0.80 28.95 -2.72 -0.08 -0.88 16 27 C -0.12 -1.68 9.81 22.25 0.22 -1.46 16 28 C -0.05 -0.94 9.59 22.52 0.22 -0.72 16 29 H 0.03 1.24 7.85 -2.39 -0.02 1.23 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.87 5.65 -2.38 -0.01 1.86 16 32 H 0.07 3.71 5.95 -2.39 -0.01 3.69 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.26 14.04 8.31 -92.70 -0.77 13.27 16 35 H 0.40 13.01 7.96 -92.71 -0.74 12.27 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.09 1.74 7.56 -2.39 -0.02 1.72 16 39 H 0.41 10.02 5.82 -92.71 -0.54 9.48 16 40 H 0.15 2.24 6.40 -2.91 -0.02 2.22 16 41 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.15 2.60 7.65 -2.91 -0.02 2.57 16 Total: -1.00 -64.39 371.69 1.91 -62.48 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -0.22 Total: 32.17 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.43 Total: 3.99 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -4.15 Total: -99.25 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -0.10 Total: -41.73 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -64.39 1.91 -62.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183853091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.537 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds