Wall clock time and date at job start Tue Mar 31 2020 21:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 18 18 C 1.53008 * 109.46978 * 300.00009 * 16 14 13 19 19 N 1.46496 * 109.46791 * 180.02562 * 16 14 13 20 20 C 1.34783 * 119.99735 * 204.99971 * 19 16 14 21 21 O 1.21557 * 119.99723 * 359.97438 * 20 19 16 22 22 C 1.47790 * 120.00070 * 180.02562 * 20 19 16 23 23 C 1.39617 * 120.12627 * 359.71853 * 22 20 19 24 24 C 1.37897 * 119.86032 * 179.79043 * 23 22 20 25 25 C 1.38516 * 120.13305 * 0.48649 * 24 23 22 26 26 Cl 1.73598 * 119.86882 * 179.71956 * 25 24 23 27 27 C 1.38511 * 120.26134 * 359.75005 * 25 24 23 28 28 C 1.37894 * 120.13808 * 0.02562 * 27 25 24 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 36 36 H 1.08996 * 109.46807 * 59.99819 * 18 16 14 37 37 H 1.08991 * 109.46791 * 180.02562 * 18 16 14 38 38 H 1.08998 * 109.46647 * 299.99988 * 18 16 14 39 39 H 0.97000 * 120.00397 * 24.99949 * 19 16 14 40 40 H 1.07996 * 120.07150 * 0.03052 * 23 22 20 41 41 H 1.07997 * 119.93538 * 180.23362 * 24 23 22 42 42 H 1.07999 * 119.92944 * 179.97438 * 27 25 24 43 43 H 1.07997 * 120.06975 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.0674 2.6131 -3.4685 18 6 1.0069 4.4822 -2.9537 19 7 -1.3221 3.8710 -2.5266 20 6 -2.0804 4.0548 -3.6257 21 8 -1.6368 3.7785 -4.7232 22 6 -3.4506 4.5933 -3.4965 23 6 -3.9644 4.9070 -2.2368 24 6 -5.2420 5.4132 -2.1230 25 6 -6.0188 5.6011 -3.2543 26 17 -7.6290 6.2319 -3.1024 27 6 -5.5162 5.2870 -4.5062 28 6 -4.2384 4.7845 -4.6331 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0605 2.9503 35 1 2.2720 2.1232 -1.9977 36 1 2.0178 4.0858 -3.0488 37 1 0.7182 4.9695 -3.8849 38 1 0.9758 5.2068 -2.1401 39 1 -1.6759 4.0918 -1.6508 40 1 -3.3610 4.7572 -1.3536 41 1 -5.6393 5.6598 -1.1495 42 1 -6.1267 5.4352 -5.3847 43 1 -3.8478 4.5396 -5.6097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183853802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:50 Heat of formation + Delta-G solvation = -64.205971 kcal Electronic energy + Delta-G solvation = -26419.148011 eV Core-core repulsion = 22489.756027 eV Total energy + Delta-G solvation = -3929.391984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61281 -39.44153 -38.45580 -36.80655 -35.53355 -34.66618 -32.71797 -31.98463 -31.42443 -30.99370 -29.72054 -27.03323 -24.97018 -23.76378 -23.17964 -22.73258 -20.73664 -20.22569 -19.45671 -18.72654 -17.28318 -16.85749 -16.33547 -15.63690 -15.59133 -15.41545 -15.01418 -14.91482 -14.63131 -14.28853 -14.03097 -13.77025 -13.66014 -13.46426 -12.74365 -12.69417 -12.55367 -12.32414 -12.01505 -11.95947 -11.82561 -11.55983 -11.43730 -11.31080 -11.22723 -11.02304 -10.89453 -10.37484 -10.28310 -10.13042 -9.69588 -9.51973 -9.42054 -9.16553 -9.12442 -8.96776 -8.56015 -7.95450 -6.18225 -4.27940 0.31412 0.86275 1.66356 2.52713 2.89899 3.18030 3.21001 3.28259 3.29819 3.45746 3.96643 4.30580 4.32705 4.41602 4.48262 4.81988 4.91784 5.11112 5.13398 5.16352 5.17337 5.30704 5.49980 5.62980 5.70940 5.74804 5.80937 5.91309 6.15940 6.23444 6.32388 6.33194 6.38722 6.58848 6.97226 7.10993 7.26372 7.32620 7.40703 7.54207 7.64413 7.81787 8.04586 8.10865 8.52660 8.68242 8.96101 9.39294 10.87017 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024311 B = 0.002131 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.469817 B =13135.126059 C =13655.967058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.699 5.699 14 C 0.499 3.501 15 O -0.547 6.547 16 C 0.120 3.880 17 H 0.110 0.890 18 C -0.157 4.157 19 N -0.701 5.701 20 C 0.560 3.440 21 O -0.538 6.538 22 C -0.126 4.126 23 C -0.070 4.070 24 C -0.117 4.117 25 C -0.014 4.014 26 Cl -0.066 7.066 27 C -0.120 4.120 28 C -0.047 4.047 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.023 0.977 32 H 0.100 0.900 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.391 0.609 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.409 0.591 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.634 10.380 -11.142 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.346 5.346 14 C 0.283 3.717 15 O -0.427 6.427 16 C 0.012 3.988 17 H 0.128 0.872 18 C -0.216 4.216 19 N -0.354 5.354 20 C 0.347 3.653 21 O -0.416 6.416 22 C -0.129 4.129 23 C -0.089 4.089 24 C -0.136 4.136 25 C -0.041 4.041 26 Cl -0.037 7.037 27 C -0.139 4.139 28 C -0.067 4.067 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.118 0.882 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.223 0.777 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.248 0.752 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.944 10.080 -11.004 21.839 hybrid contribution 0.955 0.067 0.286 0.999 sum -14.990 10.147 -10.718 21.036 Atomic orbital electron populations 1.21834 0.98356 0.98140 1.01075 1.21945 0.92590 0.99766 1.02432 1.18831 0.94337 0.89189 0.80696 0.93184 1.21211 0.90585 1.39199 1.06368 0.92002 1.24885 0.98659 0.94725 0.95384 1.69888 1.35192 1.37505 1.09301 0.86447 0.84763 0.77664 0.78233 1.20564 1.21071 1.19820 1.46464 1.14152 1.55222 1.18785 1.20227 0.83300 0.79651 0.88545 1.90660 1.51375 1.60382 1.40250 1.20913 0.82493 0.97258 0.98141 0.87200 1.22102 0.98873 0.98006 1.02589 1.45670 1.14585 1.64971 1.10176 1.18124 0.84762 0.78059 0.84336 1.90774 1.73474 1.51394 1.26006 1.20074 0.94896 1.03587 0.94387 1.21412 0.95019 0.95415 0.97073 1.21036 0.93894 1.00433 0.98188 1.21218 0.87241 1.00314 0.95280 1.98390 1.21857 1.85191 1.98262 1.21054 0.96101 1.00440 0.96291 1.21253 0.92095 0.94247 0.99061 0.94439 0.93145 0.95794 0.88187 0.94937 0.92512 0.77653 0.90554 0.91343 0.91753 0.75229 0.84150 0.84098 0.84184 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.52 37.16 0.32 -2.62 16 2 C -0.13 -3.00 5.45 -26.74 -0.15 -3.15 16 3 C 0.27 6.43 2.24 -69.09 -0.15 6.28 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.49 8.73 -34.44 -0.30 -13.79 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.92 11.29 55.43 0.63 -23.30 16 9 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 13 N -0.70 -13.32 4.91 -54.94 -0.27 -13.59 16 14 C 0.50 8.90 5.79 -10.98 -0.06 8.84 16 15 O -0.55 -11.24 12.98 5.56 0.07 -11.17 16 16 C 0.12 1.71 2.99 -69.08 -0.21 1.50 16 17 H 0.11 1.57 7.58 -51.93 -0.39 1.18 16 18 C -0.16 -1.93 9.38 37.16 0.35 -1.58 16 19 N -0.70 -9.23 4.90 -55.89 -0.27 -9.50 16 20 C 0.56 7.42 7.74 -12.35 -0.10 7.32 16 21 O -0.54 -8.49 16.01 5.32 0.09 -8.40 16 22 C -0.13 -1.36 5.87 -104.96 -0.62 -1.98 16 23 C -0.07 -0.65 9.54 -39.19 -0.37 -1.02 16 24 C -0.12 -0.97 9.81 -39.60 -0.39 -1.36 16 25 C -0.01 -0.12 6.33 -39.38 -0.25 -0.36 16 26 Cl -0.07 -0.52 28.95 -51.86 -1.50 -2.02 16 27 C -0.12 -0.98 9.81 -39.61 -0.39 -1.37 16 28 C -0.05 -0.45 9.59 -39.19 -0.38 -0.83 16 29 H 0.04 0.78 5.65 -51.93 -0.29 0.48 16 30 H 0.05 1.14 7.85 -51.93 -0.41 0.74 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.39 6.50 7.96 -40.82 -0.32 6.17 16 36 H 0.08 0.86 7.56 -51.93 -0.39 0.47 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.41 5.09 5.82 -40.82 -0.24 4.86 16 40 H 0.14 1.14 6.40 -52.49 -0.34 0.80 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.15 1.33 7.65 -52.49 -0.40 0.93 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -29.58 371.69 -9.04 -38.62 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.57 Total: 11.23 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.79 Total: -2.47 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.08 Total: -46.39 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.16 Total: -19.57 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.58 -9.04 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183853802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.584 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds