Wall clock time and date at job start Tue Mar 31 2020 21:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 18 18 C 1.53008 * 109.46978 * 300.00009 * 16 14 13 19 19 N 1.46496 * 109.46791 * 180.02562 * 16 14 13 20 20 C 1.34783 * 119.99735 * 204.99971 * 19 16 14 21 21 O 1.21557 * 119.99723 * 359.97438 * 20 19 16 22 22 C 1.47790 * 120.00070 * 180.02562 * 20 19 16 23 23 C 1.39617 * 120.12627 * 359.71853 * 22 20 19 24 24 C 1.37897 * 119.86032 * 179.79043 * 23 22 20 25 25 C 1.38516 * 120.13305 * 0.48649 * 24 23 22 26 26 Cl 1.73598 * 119.86882 * 179.71956 * 25 24 23 27 27 C 1.38511 * 120.26134 * 359.75005 * 25 24 23 28 28 C 1.37894 * 120.13808 * 0.02562 * 27 25 24 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 36 36 H 1.08996 * 109.46807 * 59.99819 * 18 16 14 37 37 H 1.08991 * 109.46791 * 180.02562 * 18 16 14 38 38 H 1.08998 * 109.46647 * 299.99988 * 18 16 14 39 39 H 0.97000 * 120.00397 * 24.99949 * 19 16 14 40 40 H 1.07996 * 120.07150 * 0.03052 * 23 22 20 41 41 H 1.07997 * 119.93538 * 180.23362 * 24 23 22 42 42 H 1.07999 * 119.92944 * 179.97438 * 27 25 24 43 43 H 1.07997 * 120.06975 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.0674 2.6131 -3.4685 18 6 1.0069 4.4822 -2.9537 19 7 -1.3221 3.8710 -2.5266 20 6 -2.0804 4.0548 -3.6257 21 8 -1.6368 3.7785 -4.7232 22 6 -3.4506 4.5933 -3.4965 23 6 -3.9644 4.9070 -2.2368 24 6 -5.2420 5.4132 -2.1230 25 6 -6.0188 5.6011 -3.2543 26 17 -7.6290 6.2319 -3.1024 27 6 -5.5162 5.2870 -4.5062 28 6 -4.2384 4.7845 -4.6331 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0605 2.9503 35 1 2.2720 2.1232 -1.9977 36 1 2.0178 4.0858 -3.0488 37 1 0.7182 4.9695 -3.8849 38 1 0.9758 5.2068 -2.1401 39 1 -1.6759 4.0918 -1.6508 40 1 -3.3610 4.7572 -1.3536 41 1 -5.6393 5.6598 -1.1495 42 1 -6.1267 5.4352 -5.3847 43 1 -3.8478 4.5396 -5.6097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183853802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:49 Heat of formation + Delta-G solvation = -81.946660 kcal Electronic energy + Delta-G solvation = -26419.917305 eV Core-core repulsion = 22489.756027 eV Total energy + Delta-G solvation = -3930.161278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66896 -40.68045 -39.44792 -37.47784 -37.13592 -36.00380 -34.39894 -33.28801 -32.40979 -32.12097 -30.80975 -28.86873 -26.06546 -25.15056 -24.32265 -23.75539 -22.07820 -21.45794 -21.08843 -19.83429 -18.62624 -17.86880 -17.61732 -17.14606 -16.90444 -16.52541 -16.31117 -15.96308 -15.89447 -15.56256 -15.05970 -14.84632 -14.58710 -14.56169 -14.44108 -14.03423 -13.69373 -13.34086 -13.32507 -13.23145 -13.14294 -12.87880 -12.69441 -12.65366 -12.60575 -12.48566 -12.15373 -12.06773 -11.87424 -11.57711 -11.21141 -11.04415 -10.75806 -10.52133 -10.29890 -10.18706 -9.84338 -9.65647 -8.14956 -6.31400 -0.44865 0.19320 1.00697 1.45980 1.47024 1.56665 1.61465 1.72853 1.83800 2.38663 2.61640 2.68077 3.15108 3.53030 3.66081 3.79916 3.82504 4.04419 4.12537 4.13492 4.23249 4.49712 4.50413 4.57429 4.63984 4.75587 4.78238 4.86544 4.99530 5.07474 5.07764 5.16271 5.17075 5.21979 5.28446 5.43592 5.55456 5.58090 5.61862 5.79797 5.91211 6.17731 6.36958 6.76048 6.88616 7.03940 7.33178 7.49915 8.90107 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024311 B = 0.002131 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.469817 B =13135.126059 C =13655.967058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.123 4.123 3 C 0.280 3.720 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.262 1.262 13 N -0.697 5.697 14 C 0.500 3.500 15 O -0.575 6.575 16 C 0.131 3.869 17 H 0.114 0.886 18 C -0.151 4.151 19 N -0.701 5.701 20 C 0.562 3.438 21 O -0.567 6.567 22 C -0.144 4.144 23 C -0.071 4.071 24 C -0.117 4.117 25 C -0.016 4.016 26 Cl -0.059 7.059 27 C -0.116 4.116 28 C -0.051 4.051 29 H 0.042 0.958 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.413 0.587 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.935 11.179 -12.433 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.177 3.823 4 H 0.023 0.977 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.186 1.186 13 N -0.345 5.345 14 C 0.286 3.714 15 O -0.456 6.456 16 C 0.023 3.977 17 H 0.131 0.869 18 C -0.209 4.209 19 N -0.354 5.354 20 C 0.351 3.649 21 O -0.447 6.447 22 C -0.147 4.147 23 C -0.089 4.089 24 C -0.136 4.136 25 C -0.043 4.043 26 Cl -0.029 7.029 27 C -0.134 4.134 28 C -0.070 4.070 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.252 0.748 40 H 0.165 0.835 41 H 0.176 0.824 42 H 0.179 0.821 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.252 10.900 -12.322 23.125 hybrid contribution 0.932 -0.142 0.699 1.174 sum -15.320 10.758 -11.623 22.034 Atomic orbital electron populations 1.21670 0.96937 0.99097 1.00279 1.21806 0.93770 0.99328 1.01304 1.18389 0.93631 0.89066 0.81228 0.97710 1.21573 0.91457 1.38777 1.06597 0.90919 1.25719 1.02992 0.94482 0.95174 1.70036 1.36931 1.38408 1.09825 0.85424 0.79536 0.77325 0.78529 1.20452 1.21253 1.18564 1.46193 1.15153 1.55382 1.17802 1.20797 0.82333 0.78825 0.89453 1.90649 1.52054 1.61153 1.41721 1.20788 0.83583 0.97839 0.95517 0.86875 1.22076 0.98854 0.97148 1.02827 1.45684 1.14281 1.64849 1.10545 1.18456 0.85438 0.77340 0.83666 1.90752 1.74251 1.52832 1.26904 1.19983 0.93913 1.05246 0.95583 1.21492 0.95511 0.95226 0.96709 1.21245 0.93437 0.99797 0.99092 1.21373 0.87564 0.99853 0.95486 1.98397 1.21276 1.85020 1.98250 1.21254 0.95638 0.99462 0.97068 1.21331 0.92565 0.94375 0.98768 0.93918 0.95120 0.93899 0.90968 0.94225 0.92666 0.76016 0.89431 0.90604 0.91829 0.74833 0.83484 0.82352 0.82063 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.52 71.98 0.61 -4.66 16 2 C -0.12 -5.82 5.45 30.59 0.17 -5.65 16 3 C 0.28 13.50 2.24 44.24 0.10 13.60 16 4 H 0.01 0.29 7.58 -2.39 -0.02 0.27 16 5 C -0.55 -27.49 8.73 25.60 0.22 -27.26 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.91 -50.63 11.29 21.45 0.24 -50.38 16 9 Si 0.97 40.87 29.54 68.60 2.03 42.89 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 13 N -0.70 -26.33 4.91 -446.11 -2.19 -28.52 16 14 C 0.50 17.70 5.79 87.66 0.51 18.21 16 15 O -0.57 -23.86 12.98 -3.03 -0.04 -23.90 16 16 C 0.13 3.60 2.99 44.25 0.13 3.73 16 17 H 0.11 3.11 7.58 -2.39 -0.02 3.09 16 18 C -0.15 -3.47 9.38 71.98 0.68 -2.79 16 19 N -0.70 -18.00 4.90 -449.01 -2.20 -20.21 16 20 C 0.56 14.54 7.74 86.77 0.67 15.21 16 21 O -0.57 -17.56 16.01 -3.89 -0.06 -17.62 16 22 C -0.14 -2.99 5.87 -20.09 -0.12 -3.11 16 23 C -0.07 -1.22 9.54 22.52 0.21 -1.00 16 24 C -0.12 -1.74 9.81 22.26 0.22 -1.52 16 25 C -0.02 -0.24 6.33 22.40 0.14 -0.09 16 26 Cl -0.06 -0.80 28.95 -2.72 -0.08 -0.88 16 27 C -0.12 -1.67 9.81 22.25 0.22 -1.45 16 28 C -0.05 -0.92 9.59 22.52 0.22 -0.70 16 29 H 0.04 1.76 5.65 -2.39 -0.01 1.75 16 30 H 0.03 1.41 7.85 -2.39 -0.02 1.39 16 31 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.07 3.86 5.95 -2.39 -0.01 3.84 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.40 12.99 7.96 -92.71 -0.74 12.26 16 36 H 0.09 1.81 7.56 -2.39 -0.02 1.79 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.41 10.10 5.82 -92.71 -0.54 9.56 16 40 H 0.15 2.26 6.40 -2.91 -0.02 2.24 16 41 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.15 2.57 7.65 -2.91 -0.02 2.55 16 Total: -1.00 -63.78 371.69 1.91 -61.87 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.22 Total: 32.93 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 4.43 Total: 3.82 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -4.15 Total: -99.11 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.10 Total: -41.52 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -63.78 1.91 -61.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183853802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.076 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds