Wall clock time and date at job start Tue Mar 31 2020 21:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47099 * 89.99658 * 9 7 5 11 11 H 1.48495 * 109.47152 * 209.99607 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99717 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 18 18 C 1.53004 * 109.46779 * 300.00319 * 16 14 13 19 19 N 1.46500 * 109.47299 * 180.02562 * 16 14 13 20 20 C 1.34768 * 120.00033 * 205.00037 * 19 16 14 21 21 O 1.21565 * 119.99724 * 359.97438 * 20 19 16 22 22 C 1.47781 * 120.00354 * 180.02562 * 20 19 16 23 23 C 1.39616 * 120.12712 * 359.72183 * 22 20 19 24 24 C 1.37902 * 119.86893 * 179.78979 * 23 22 20 25 25 C 1.38512 * 120.12416 * 0.49012 * 24 23 22 26 26 Cl 1.73607 * 119.86459 * 179.71901 * 25 24 23 27 27 C 1.38508 * 120.26806 * 359.74104 * 25 24 23 28 28 C 1.37895 * 120.13445 * 0.02562 * 27 25 24 29 29 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 31 31 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 32 32 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 33 33 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 34 34 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 36 36 H 1.09001 * 109.47281 * 60.00049 * 18 16 14 37 37 H 1.09002 * 109.46837 * 179.97438 * 18 16 14 38 38 H 1.08993 * 109.47257 * 299.99745 * 18 16 14 39 39 H 0.97000 * 119.99631 * 25.00301 * 19 16 14 40 40 H 1.08005 * 120.06899 * 0.02575 * 23 22 20 41 41 H 1.07997 * 119.93531 * 180.22927 * 24 23 22 42 42 H 1.08001 * 119.93326 * 180.02562 * 27 25 24 43 43 H 1.08001 * 120.06793 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 1 0.7332 4.1557 2.8675 18 6 0.0762 2.3253 3.7942 19 7 -1.3177 3.8812 2.5229 20 6 -1.7071 4.9194 3.2889 21 8 -0.9329 5.4092 4.0880 22 6 -3.0757 5.4616 3.1584 23 6 -3.9655 4.9041 2.2382 24 6 -5.2427 5.4115 2.1239 25 6 -5.6400 6.4786 2.9126 26 17 -7.2471 7.1166 2.7580 27 6 -4.7601 7.0388 3.8239 28 6 -3.4820 6.5370 3.9506 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0617 -2.9496 35 1 2.2720 2.1230 1.9979 36 1 1.0853 1.9248 3.8910 37 1 -0.2116 2.8130 4.7256 38 1 -0.6180 1.5130 3.5795 39 1 -1.9355 3.4900 1.8855 40 1 -3.6555 4.0747 1.6198 41 1 -5.9331 4.9787 1.4151 42 1 -5.0757 7.8705 4.4364 43 1 -2.7967 6.9750 4.6611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183853820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:53 Heat of formation + Delta-G solvation = -82.199759 kcal Electronic energy + Delta-G solvation = -26425.172607 eV Core-core repulsion = 22495.000353 eV Total energy + Delta-G solvation = -3930.172254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67185 -40.68262 -39.44759 -37.47702 -37.12685 -36.00563 -34.40462 -33.25318 -32.42059 -32.12190 -30.84371 -28.83138 -26.05634 -25.14454 -24.33789 -23.75665 -22.06543 -21.45870 -21.08217 -19.83121 -18.62552 -17.91076 -17.62091 -17.07326 -16.88362 -16.54649 -16.32161 -15.97853 -15.89850 -15.67878 -14.99623 -14.67823 -14.61465 -14.53628 -14.44145 -14.18380 -13.54525 -13.38220 -13.31699 -13.26206 -13.15583 -12.89916 -12.66861 -12.65454 -12.60886 -12.48812 -12.15239 -12.02901 -11.87433 -11.56040 -11.21733 -11.03448 -10.76746 -10.52379 -10.29088 -10.18735 -9.84263 -9.65865 -8.15749 -6.32297 -0.44942 0.19255 1.00616 1.44999 1.46196 1.55639 1.61238 1.73166 1.83504 2.38071 2.61502 2.67920 3.14089 3.52988 3.66011 3.79864 3.82281 4.04544 4.13205 4.13651 4.23197 4.49640 4.53564 4.60860 4.64835 4.77455 4.79743 4.86504 4.99461 5.07590 5.09067 5.16855 5.17122 5.22540 5.31066 5.46059 5.56898 5.58007 5.61274 5.81459 5.91800 6.18859 6.36987 6.75291 6.88478 7.03982 7.32591 7.49574 8.89129 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022646 B = 0.002137 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.105426 B =13101.523446 C =13567.656425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.267 1.267 13 N -0.696 5.696 14 C 0.501 3.499 15 O -0.575 6.575 16 C 0.131 3.869 17 H 0.111 0.889 18 C -0.150 4.150 19 N -0.700 5.700 20 C 0.562 3.438 21 O -0.568 6.568 22 C -0.144 4.144 23 C -0.070 4.070 24 C -0.117 4.117 25 C -0.016 4.016 26 Cl -0.059 7.059 27 C -0.116 4.116 28 C -0.052 4.052 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.413 0.587 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 9.033 13.240 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.019 0.981 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.345 5.345 14 C 0.286 3.714 15 O -0.456 6.456 16 C 0.022 3.978 17 H 0.129 0.871 18 C -0.208 4.208 19 N -0.353 5.353 20 C 0.350 3.650 21 O -0.448 6.448 22 C -0.147 4.147 23 C -0.089 4.089 24 C -0.135 4.135 25 C -0.043 4.043 26 Cl -0.029 7.029 27 C -0.134 4.134 28 C -0.071 4.071 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.252 0.748 40 H 0.166 0.834 41 H 0.177 0.823 42 H 0.179 0.821 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.995 9.285 12.920 23.280 hybrid contribution 0.913 -0.245 -0.647 1.146 sum -16.082 9.039 12.272 22.157 Atomic orbital electron populations 1.21674 0.96694 0.99237 1.00436 1.21778 0.94025 0.98880 1.01348 1.18398 0.93505 0.89332 0.81148 0.98051 1.21585 0.91610 1.38839 1.06617 0.91125 1.25708 1.02977 0.94499 0.95121 1.70035 1.36888 1.38321 1.09860 0.85431 0.79570 0.78793 0.77063 1.19722 1.21409 1.19122 1.46197 1.15284 1.55256 1.17785 1.20797 0.82465 0.78794 0.89348 1.90650 1.52294 1.61126 1.41540 1.20791 0.85693 0.98160 0.93155 0.87148 1.22074 1.04311 0.97840 0.96587 1.45675 1.14262 1.33876 1.41518 1.18462 0.87597 0.78900 0.79993 1.90755 1.55287 1.60726 1.38029 1.19980 0.93383 1.00100 1.01270 1.21497 0.92578 0.98986 0.95861 1.21248 0.96667 0.95715 0.99916 1.21374 0.87485 0.96761 0.98656 1.98397 1.21648 1.85824 1.97072 1.21252 0.92216 1.01351 0.98610 1.21330 0.95715 0.93196 0.96831 0.93704 0.93325 0.95390 0.91158 0.93954 0.92645 0.76020 0.89384 0.90667 0.91531 0.74803 0.83436 0.82308 0.82076 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 8.52 71.98 0.61 -4.46 16 2 C -0.12 -5.61 5.45 30.59 0.17 -5.45 16 3 C 0.28 13.50 2.24 44.24 0.10 13.60 16 4 H 0.00 0.09 7.57 -2.39 -0.02 0.07 16 5 C -0.55 -27.91 8.73 25.60 0.22 -27.69 16 6 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -50.73 11.29 21.45 0.24 -50.49 16 9 Si 0.97 41.23 29.54 68.60 2.03 43.25 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 13 N -0.70 -26.36 4.91 -446.09 -2.19 -28.55 16 14 C 0.50 17.71 5.79 87.66 0.51 18.22 16 15 O -0.58 -23.88 13.01 -3.03 -0.04 -23.92 16 16 C 0.13 3.58 2.98 44.25 0.13 3.72 16 17 H 0.11 3.10 7.58 -2.39 -0.02 3.09 16 18 C -0.15 -3.33 9.38 71.98 0.68 -2.65 16 19 N -0.70 -18.00 4.90 -449.03 -2.20 -20.20 16 20 C 0.56 14.63 7.74 86.77 0.67 15.30 16 21 O -0.57 -17.75 16.01 -3.92 -0.06 -17.81 16 22 C -0.14 -3.01 5.87 -20.09 -0.12 -3.13 16 23 C -0.07 -1.21 9.54 22.52 0.21 -1.00 16 24 C -0.12 -1.73 9.81 22.26 0.22 -1.51 16 25 C -0.02 -0.24 6.33 22.40 0.14 -0.09 16 26 Cl -0.06 -0.81 28.95 -2.72 -0.08 -0.88 16 27 C -0.12 -1.68 9.81 22.25 0.22 -1.46 16 28 C -0.05 -0.94 9.59 22.52 0.22 -0.72 16 29 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.05 1.86 5.67 -2.39 -0.01 1.85 16 31 H 0.03 1.24 7.85 -2.39 -0.02 1.23 16 32 H 0.07 3.71 5.95 -2.38 -0.01 3.69 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.26 14.00 8.31 -92.71 -0.77 13.22 16 35 H 0.40 13.01 7.97 -92.70 -0.74 12.27 16 36 H 0.09 1.74 7.57 -2.39 -0.02 1.72 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.41 10.03 5.82 -92.71 -0.54 9.49 16 40 H 0.15 2.24 6.40 -2.91 -0.02 2.22 16 41 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.15 2.60 7.65 -2.91 -0.02 2.57 16 Total: -1.00 -64.41 371.76 1.91 -62.50 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.22 Total: 32.08 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 4.43 Total: 4.02 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -4.15 Total: -99.24 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.10 Total: -41.73 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.88 kcal Total: -64.41 1.91 -62.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183853820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.698 kcal (2) G-P(sol) polarization free energy of solvation -64.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds