Wall clock time and date at job start Tue Mar 31 2020 21:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46966 * 2 1 4 4 H 1.09000 * 109.47603 * 304.99920 * 3 2 1 5 5 C 1.50701 * 109.46901 * 184.99807 * 3 2 1 6 6 H 1.08000 * 120.00334 * 239.99928 * 5 3 2 7 7 C 1.37874 * 119.99828 * 60.00521 * 5 3 2 8 8 N 1.31511 * 120.00140 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99982 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47146 * 59.99602 * 9 7 5 11 11 H 1.48503 * 109.47243 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47210 * 299.99895 * 9 7 5 13 13 N 1.46502 * 109.47178 * 64.99976 * 3 2 1 14 14 C 1.34773 * 120.00267 * 274.99990 * 13 3 2 15 15 O 1.21284 * 119.99930 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00240 * 179.97438 * 14 13 3 17 17 H 1.09002 * 110.88749 * 52.63736 * 16 14 13 18 18 C 1.54907 * 111.20434 * 288.85271 * 16 14 13 19 19 C 1.51682 * 102.47702 * 266.40657 * 18 16 14 20 20 C 1.47492 * 125.87419 * 164.48693 * 19 18 16 21 21 C 1.39854 * 120.17873 * 89.44218 * 20 19 18 22 22 F 1.35094 * 120.09833 * 0.25518 * 21 20 19 23 23 C 1.38208 * 119.81170 * 180.29868 * 21 20 19 24 24 C 1.38315 * 120.18198 * 359.95712 * 23 21 20 25 25 C 1.38311 * 120.37250 * 0.03981 * 24 23 21 26 26 C 1.38205 * 120.18239 * 359.97438 * 25 24 23 27 27 F 1.35102 * 120.09696 * 179.97438 * 26 25 24 28 28 N 1.29160 * 108.25894 * 344.22784 * 19 18 16 29 29 O 1.41393 * 112.85341 * 359.93798 * 28 19 18 30 30 H 1.08988 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47155 * 300.00265 * 1 2 3 32 32 H 1.09003 * 109.46591 * 59.99400 * 1 2 3 33 33 H 1.08994 * 109.46924 * 240.00275 * 2 1 3 34 34 H 1.08998 * 109.47050 * 120.00068 * 2 1 3 35 35 H 0.97001 * 120.00031 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99765 * 94.99922 * 13 3 2 37 37 H 1.09005 * 110.92826 * 148.11913 * 18 16 14 38 38 H 1.09000 * 110.73584 * 24.60852 * 18 16 14 39 39 H 1.08003 * 119.91226 * 179.97438 * 23 21 20 40 40 H 1.08007 * 119.81281 * 180.02562 * 24 23 21 41 41 H 1.08004 * 119.91220 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3368 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1474 -0.2349 11 1 6.3979 0.2168 -2.6504 12 1 6.4995 2.2815 -1.3820 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3393 2.6327 0.4342 16 6 0.0363 3.3377 2.6549 17 1 0.7838 4.0708 2.9579 18 6 -0.2037 2.2992 3.7790 19 6 -1.6975 2.0535 3.6847 20 6 -2.4283 0.9270 4.2948 21 6 -2.9374 1.0396 5.5926 22 9 -2.7660 2.1834 6.2907 23 6 -3.6157 -0.0230 6.1592 24 6 -3.7923 -1.1949 5.4462 25 6 -3.2921 -1.3145 4.1622 26 6 -2.6112 -0.2616 3.5809 27 9 -2.1228 -0.3805 2.3269 28 7 -2.2204 3.0034 2.9829 29 8 -1.2657 3.9464 2.5374 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3632 0.5140 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8293 -0.0616 -2.9495 36 1 2.2720 2.1232 1.9978 37 1 0.0599 2.7118 4.7529 38 1 0.3524 1.3826 3.5827 39 1 -4.0091 0.0621 7.1614 40 1 -4.3237 -2.0214 5.8946 41 1 -3.4339 -2.2332 3.6123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279151144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:32 Heat of formation + Delta-G solvation = -77.332060 kcal Electronic energy + Delta-G solvation = -29929.658612 eV Core-core repulsion = 25447.900758 eV Total energy + Delta-G solvation = -4481.757855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.38746 -49.17162 -40.62296 -39.11380 -38.25138 -35.07175 -33.88101 -32.57637 -31.42526 -30.76786 -30.54847 -30.24966 -27.02350 -24.64658 -24.13822 -23.19993 -22.89215 -20.75530 -20.24695 -19.42448 -18.44343 -17.84719 -17.51613 -17.05195 -16.34124 -16.19980 -15.94821 -15.74942 -15.54632 -15.42604 -14.97043 -14.80719 -14.69030 -14.35730 -13.93633 -13.48164 -13.15706 -13.10149 -12.69515 -12.62703 -12.45926 -12.27928 -12.17092 -11.97190 -11.76430 -11.43892 -11.26086 -11.01923 -10.97281 -10.83704 -10.36579 -10.19804 -10.05136 -9.62706 -9.37514 -9.17357 -9.08666 -8.80181 -8.51970 -7.89641 -6.14475 -4.24698 0.37181 0.55707 1.50096 2.74679 2.88264 3.23371 3.28540 3.29245 3.29892 3.38508 3.73271 3.89614 3.98663 4.23156 4.32444 4.34445 4.40858 4.47005 4.66322 4.96505 5.09567 5.16807 5.23352 5.35789 5.36914 5.45533 5.50469 5.56421 5.69972 5.70736 6.27490 6.39951 6.47034 6.66791 7.03358 7.14853 7.21153 7.33678 7.39809 7.58565 7.68741 7.86655 8.15027 8.56467 8.72973 9.02821 9.42366 10.90686 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.003289 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.674283 B = 8510.476205 C = 9188.827113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.485 3.515 15 O -0.520 6.520 16 C 0.022 3.978 17 H 0.138 0.862 18 C -0.132 4.132 19 C 0.111 3.889 20 C -0.105 4.105 21 C 0.157 3.843 22 F -0.123 7.123 23 C -0.167 4.167 24 C -0.048 4.048 25 C -0.164 4.164 26 C 0.163 3.837 27 F -0.109 7.109 28 N -0.246 5.246 29 O -0.160 6.160 30 H 0.022 0.978 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.030 0.970 35 H 0.265 0.735 36 H 0.388 0.612 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.337 -3.909 19.564 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.352 5.352 14 C 0.267 3.733 15 O -0.396 6.396 16 C -0.041 4.041 17 H 0.156 0.844 18 C -0.171 4.171 19 C -0.082 4.082 20 C -0.108 4.108 21 C 0.137 3.863 22 F -0.101 7.101 23 C -0.186 4.186 24 C -0.066 4.066 25 C -0.183 4.183 26 C 0.142 3.858 27 F -0.087 7.087 28 N 0.017 4.983 29 O -0.180 6.180 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.220 0.780 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.795 -3.317 18.108 22.419 hybrid contribution 2.358 -0.086 0.350 2.386 sum -10.437 -3.402 18.458 21.475 Atomic orbital electron populations 1.21841 0.98108 0.98107 1.01289 1.21932 0.92684 0.99644 1.02240 1.18821 0.94245 0.89196 0.80690 0.93263 1.21171 0.90566 1.39327 1.06413 0.92105 1.24883 0.98621 0.94761 0.95343 1.69885 1.35258 1.37340 1.09318 0.86511 0.84798 0.78327 0.77471 1.20162 1.21113 1.20172 1.46465 1.14103 1.55892 1.18770 1.20362 0.83636 0.80363 0.88891 1.90739 1.51135 1.58192 1.39529 1.23851 0.89337 0.96671 0.94221 0.84427 1.23013 0.92418 1.01230 1.00477 1.23629 0.94734 0.94625 0.95254 1.17723 1.05930 0.92786 0.94322 1.17347 0.97492 0.83159 0.88334 1.91559 1.93211 1.47569 1.77754 1.21135 1.02434 0.92701 1.02327 1.20999 0.95944 0.97010 0.92674 1.21233 1.00941 0.99145 0.96990 1.17519 0.95005 0.92762 0.80495 1.91692 1.84774 1.95947 1.36267 1.78542 1.15029 0.98963 1.05781 1.91310 1.12288 1.30979 1.83403 0.95855 0.94114 0.93371 0.88251 0.95111 0.92453 0.78005 0.86793 0.87124 0.83353 0.83376 0.83152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.52 37.16 0.32 -2.80 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.93 16 9 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.70 -14.18 5.02 -54.93 -0.28 -14.46 16 14 C 0.49 9.83 5.72 -10.99 -0.06 9.77 16 15 O -0.52 -12.91 13.73 -13.28 -0.18 -13.09 16 16 C 0.02 0.34 4.22 -26.88 -0.11 0.23 16 17 H 0.14 1.66 8.14 -51.93 -0.42 1.24 16 18 C -0.13 -1.69 6.61 -26.39 -0.17 -1.86 16 19 C 0.11 1.66 6.06 -79.46 -0.48 1.18 16 20 C -0.10 -1.30 5.85 -104.92 -0.61 -1.92 16 21 C 0.16 1.58 7.29 -38.99 -0.28 1.30 16 22 F -0.12 -1.34 16.83 2.25 0.04 -1.30 16 23 C -0.17 -1.13 10.01 -39.56 -0.40 -1.52 16 24 C -0.05 -0.28 10.03 -39.53 -0.40 -0.67 16 25 C -0.16 -1.33 10.01 -39.57 -0.40 -1.73 16 26 C 0.16 1.97 7.29 -38.99 -0.28 1.68 16 27 F -0.11 -1.70 15.89 2.25 0.04 -1.66 16 28 N -0.25 -4.42 12.54 35.27 0.44 -3.98 16 29 O -0.16 -2.97 11.82 -30.21 -0.36 -3.33 16 30 H 0.02 0.47 8.14 -51.94 -0.42 0.05 16 31 H 0.04 0.90 4.69 -51.93 -0.24 0.66 16 32 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 33 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.39 6.54 8.54 -40.82 -0.35 6.19 16 37 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.11 1.37 7.92 -51.93 -0.41 0.96 16 39 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 40 H 0.15 0.34 8.06 -52.48 -0.42 -0.08 16 41 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -33.88 356.60 -7.52 -41.40 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.61 Total: 5.08 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -3.58 Total: -5.45 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.79 Total: -42.36 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.54 Total: -16.42 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.07 Total: -2.96 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.88 -7.52 -41.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279151144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.934 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds