Wall clock time and date at job start Tue Mar 31 2020 21:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46642 * 2 1 4 4 H 1.08997 * 109.47120 * 55.00237 * 3 2 1 5 5 C 1.50694 * 109.46843 * 175.00125 * 3 2 1 6 6 H 1.07999 * 119.99982 * 120.00135 * 5 3 2 7 7 C 1.37884 * 120.00170 * 300.00003 * 5 3 2 8 8 N 1.31512 * 119.99803 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99723 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47363 * 90.00072 * 9 7 5 11 11 H 1.48509 * 109.46994 * 210.00155 * 9 7 5 12 12 H 1.48502 * 109.47014 * 329.99975 * 9 7 5 13 13 N 1.46499 * 109.47255 * 295.00091 * 3 2 1 14 14 C 1.34779 * 120.00207 * 84.99928 * 13 3 2 15 15 O 1.21282 * 119.99595 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00047 * 179.97438 * 14 13 3 17 17 H 1.09000 * 110.86138 * 307.34497 * 16 14 13 18 18 C 1.54907 * 110.84964 * 71.35147 * 16 14 13 19 19 C 1.51682 * 102.47702 * 142.59520 * 18 16 14 20 20 C 1.47492 * 125.87419 * 164.48693 * 19 18 16 21 21 C 1.39854 * 120.17873 * 89.44218 * 20 19 18 22 22 F 1.35094 * 120.09833 * 0.25518 * 21 20 19 23 23 C 1.38208 * 119.81170 * 180.29868 * 21 20 19 24 24 C 1.38315 * 120.18198 * 359.95712 * 23 21 20 25 25 C 1.38311 * 120.37250 * 0.03981 * 24 23 21 26 26 C 1.38205 * 120.18239 * 359.97438 * 25 24 23 27 27 F 1.35102 * 120.09696 * 179.97438 * 26 25 24 28 28 N 1.29160 * 108.25894 * 344.22784 * 19 18 16 29 29 O 1.41393 * 112.85341 * 359.93798 * 28 19 18 30 30 H 1.08999 * 109.47326 * 299.99874 * 1 2 3 31 31 H 1.08999 * 109.47108 * 60.00165 * 1 2 3 32 32 H 1.09004 * 109.46585 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47028 * 240.00435 * 2 1 3 34 34 H 1.08991 * 109.47452 * 119.99832 * 2 1 3 35 35 H 0.97002 * 119.99166 * 179.97438 * 8 7 5 36 36 H 0.96999 * 119.99585 * 265.00324 * 13 3 2 37 37 H 1.09005 * 110.92826 * 24.30776 * 18 16 14 38 38 H 1.09000 * 110.73584 * 260.79715 * 18 16 14 39 39 H 1.08003 * 119.91226 * 179.97438 * 23 21 20 40 40 H 1.08007 * 119.81281 * 180.02562 * 24 23 21 41 41 H 1.08004 * 119.91255 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1470 1.8891 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3362 9 14 3.0964 0.1089 2.5700 10 1 2.8756 -1.3272 2.2633 11 1 3.7937 0.2349 3.8752 12 1 1.7876 0.8073 2.6386 13 7 1.6523 2.0976 -1.2518 14 6 0.4349 2.6644 -1.3670 15 8 -0.3394 2.6326 -0.4341 16 6 0.0365 3.3386 -2.6544 17 1 0.7841 4.0723 -2.9560 18 6 -0.2057 2.2937 -3.7720 19 6 -1.3853 2.8831 -4.5217 20 6 -1.8428 2.4827 -5.8655 21 6 -2.7805 1.4555 -6.0118 22 9 -3.2750 0.8292 -4.9217 23 6 -3.1993 1.0822 -7.2749 24 6 -2.6943 1.7221 -8.3923 25 6 -1.7666 2.7390 -8.2564 26 6 -1.3371 3.1243 -7.0006 27 9 -0.4305 4.1174 -6.8698 28 7 -1.9237 3.7921 -3.7787 29 8 -1.2656 3.9470 -2.5368 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.8769 0.4828 2.1132 36 1 2.2718 2.1232 -1.9977 37 1 -0.4625 1.3228 -3.3483 38 1 0.6656 2.2149 -4.4221 39 1 -3.9231 0.2889 -7.3898 40 1 -3.0260 1.4259 -9.3766 41 1 -1.3775 3.2339 -9.1339 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279151146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:35 Heat of formation + Delta-G solvation = -92.101335 kcal Electronic energy + Delta-G solvation = -29157.876985 eV Core-core repulsion = 24675.478687 eV Total energy + Delta-G solvation = -4482.398298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.18552 -50.14483 -41.93027 -40.38832 -39.60304 -37.19088 -35.00918 -34.51429 -33.63961 -31.90475 -31.42869 -31.42497 -29.42943 -26.04457 -25.02736 -24.52586 -23.90775 -22.57774 -21.51362 -21.39081 -19.50357 -19.25891 -18.52081 -18.24332 -18.09221 -17.41660 -17.28677 -16.81648 -16.79335 -16.74684 -16.46340 -16.20562 -16.00750 -15.53449 -15.40669 -15.11045 -14.66507 -14.54147 -14.18142 -14.05810 -13.85148 -13.79649 -13.66360 -13.32413 -13.07194 -13.01457 -12.85703 -12.81215 -12.69059 -12.45812 -12.20945 -11.90112 -11.45668 -11.29411 -11.20715 -10.89302 -10.60898 -10.12522 -9.92499 -9.86430 -8.40481 -6.46058 -0.34381 -0.10410 0.28006 1.24402 1.29728 1.34181 1.43188 1.54827 2.21666 2.23736 2.25325 2.62172 2.83228 2.95215 3.14650 3.18756 3.28784 3.56531 3.71378 3.74012 3.81927 4.11042 4.15119 4.16897 4.26300 4.34958 4.38424 4.45011 4.65213 4.71854 4.77538 4.92101 4.95234 5.02508 5.05019 5.14907 5.15480 5.33887 5.45602 5.53218 5.65205 5.89356 6.09992 6.54724 6.70238 7.12874 7.28847 8.74400 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.002805 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.172081 B = 9980.835439 C =10249.729569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 C 0.250 3.750 4 H 0.021 0.979 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.931 3.069 10 H -0.256 1.256 11 H -0.294 1.294 12 H -0.264 1.264 13 N -0.685 5.685 14 C 0.511 3.489 15 O -0.565 6.565 16 C 0.028 3.972 17 H 0.139 0.861 18 C -0.129 4.129 19 C 0.139 3.861 20 C -0.135 4.135 21 C 0.134 3.866 22 F -0.140 7.140 23 C -0.151 4.151 24 C -0.026 4.026 25 C -0.149 4.149 26 C 0.142 3.858 27 F -0.134 7.134 28 N -0.293 5.293 29 O -0.197 6.197 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.271 0.729 36 H 0.411 0.589 37 H 0.110 0.890 38 H 0.153 0.847 39 H 0.176 0.824 40 H 0.196 0.804 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.698 -1.543 -27.043 31.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.175 4.175 3 C 0.145 3.855 4 H 0.038 0.962 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.569 5.569 9 Si 0.759 3.241 10 H -0.182 1.182 11 H -0.221 1.221 12 H -0.189 1.189 13 N -0.336 5.336 14 C 0.295 3.705 15 O -0.443 6.443 16 C -0.034 4.034 17 H 0.157 0.843 18 C -0.168 4.168 19 C -0.055 4.055 20 C -0.137 4.137 21 C 0.114 3.886 22 F -0.119 7.119 23 C -0.170 4.170 24 C -0.044 4.044 25 C -0.167 4.167 26 C 0.122 3.878 27 F -0.113 7.113 28 N -0.033 5.033 29 O -0.215 6.215 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.248 0.752 37 H 0.129 0.871 38 H 0.170 0.830 39 H 0.193 0.807 40 H 0.213 0.787 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.927 -0.729 -25.870 30.924 hybrid contribution 1.151 -0.491 1.573 2.010 sum -15.777 -1.220 -24.297 28.995 Atomic orbital electron populations 1.21777 0.95625 1.00657 1.01239 1.22210 0.95361 0.98310 1.01580 1.18860 0.93573 0.89733 0.83303 0.96153 1.21224 0.89918 1.38713 1.07172 0.91980 1.25481 0.95657 0.95869 0.99669 1.69959 1.10140 1.45988 1.30829 0.86114 0.79240 0.80156 0.78599 1.18206 1.22119 1.18918 1.45843 1.14724 1.55496 1.17546 1.20278 0.82418 0.78968 0.88800 1.90714 1.52401 1.59889 1.41345 1.23743 0.89164 0.96540 0.93920 0.84340 1.23090 0.98912 1.00056 0.94728 1.24214 0.95303 0.91827 0.94114 1.17848 1.04784 1.02626 0.88492 1.17775 0.94076 0.92086 0.84666 1.91547 1.85833 1.80599 1.53915 1.21599 1.03068 1.03425 0.88878 1.21585 0.91430 0.90924 1.00443 1.21615 0.99830 1.00047 0.95252 1.17644 0.89899 0.87095 0.93187 1.91550 1.64328 1.58588 1.96789 1.78612 1.16653 1.15702 0.92371 1.91360 1.26941 1.76757 1.26447 0.94825 0.93223 0.91948 0.90471 0.93582 0.92001 0.75229 0.87142 0.82953 0.80669 0.78717 0.80268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 8.51 71.98 0.61 -4.71 16 2 C -0.14 -5.76 5.11 30.60 0.16 -5.61 16 3 C 0.25 11.62 1.83 44.25 0.08 11.70 16 4 H 0.02 1.09 6.64 -2.39 -0.02 1.08 16 5 C -0.53 -28.32 9.31 25.60 0.24 -28.08 16 6 H 0.06 3.47 7.98 -2.91 -0.02 3.45 16 7 C 0.03 1.86 5.45 84.66 0.46 2.33 16 8 N -0.93 -55.07 13.96 21.45 0.30 -54.77 16 9 Si 0.93 44.58 24.41 68.60 1.67 46.25 16 10 H -0.26 -11.45 6.83 99.48 0.68 -10.77 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.26 -12.77 6.53 99.48 0.65 -12.12 16 13 N -0.69 -25.91 5.02 -446.10 -2.24 -28.15 16 14 C 0.51 19.54 5.70 87.66 0.50 20.04 16 15 O -0.56 -26.67 13.73 14.98 0.21 -26.47 16 16 C 0.03 0.86 4.24 30.50 0.13 0.99 16 17 H 0.14 3.45 8.14 -2.39 -0.02 3.43 16 18 C -0.13 -3.04 6.60 30.81 0.20 -2.84 16 19 C 0.14 3.59 6.06 45.71 0.28 3.86 16 20 C -0.13 -2.62 5.85 -20.06 -0.12 -2.74 16 21 C 0.13 2.26 7.29 22.65 0.17 2.43 16 22 F -0.14 -3.17 16.83 44.97 0.76 -2.41 16 23 C -0.15 -1.14 10.01 22.28 0.22 -0.91 16 24 C -0.03 -0.07 10.03 22.31 0.22 0.16 16 25 C -0.15 -0.94 10.01 22.28 0.22 -0.71 16 26 C 0.14 2.13 7.29 22.65 0.17 2.29 16 27 F -0.13 -2.49 16.83 44.97 0.76 -1.73 16 28 N -0.29 -9.69 12.54 -42.31 -0.53 -10.22 16 29 O -0.20 -7.42 11.82 -20.31 -0.24 -7.66 16 30 H 0.03 1.44 7.85 -2.39 -0.02 1.42 16 31 H 0.05 1.92 5.65 -2.39 -0.01 1.91 16 32 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.05 2.05 3.21 -2.39 -0.01 2.04 16 35 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.41 12.94 8.54 -92.71 -0.79 12.15 16 37 H 0.11 2.71 7.91 -2.38 -0.02 2.70 16 38 H 0.15 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 40 H 0.20 -1.17 8.06 -2.91 -0.02 -1.19 16 41 H 0.18 0.11 8.06 -2.91 -0.02 0.08 16 Total: -1.00 -78.40 351.71 4.45 -73.95 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.23 Total: 13.00 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 3.54 Total: -1.81 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -2.47 Total: -93.14 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.03 Total: -34.12 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 1.51 Total: -4.14 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.67 Total: 46.25 kcal Total: -78.40 4.45 -73.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279151146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.150 kcal (2) G-P(sol) polarization free energy of solvation -78.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds