Wall clock time and date at job start Tue Mar 31 2020 21:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34775 * 120.00282 * 84.99902 * 13 3 2 15 15 O 1.21285 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00356 * 180.02562 * 14 13 3 17 17 H 1.09004 * 110.85833 * 52.65563 * 16 14 13 18 18 C 1.54737 * 110.97118 * 288.82348 * 16 14 13 19 19 C 1.51682 * 102.55561 * 217.64633 * 18 16 14 20 20 C 1.47491 * 125.87331 * 195.37499 * 19 18 16 21 21 C 1.39857 * 120.17977 * 89.72132 * 20 19 18 22 22 F 1.35102 * 120.09539 * 359.97438 * 21 20 19 23 23 C 1.38210 * 119.81016 * 179.76790 * 21 20 19 24 24 C 1.38317 * 120.18437 * 0.48769 * 23 21 20 25 25 C 1.38317 * 120.36831 * 359.76804 * 24 23 21 26 26 C 1.38213 * 120.18208 * 359.97438 * 25 24 23 27 27 F 1.35100 * 120.09055 * 179.97438 * 26 25 24 28 28 N 1.29153 * 108.25796 * 15.39077 * 19 18 16 29 29 O 1.41393 * 112.86275 * 0.32413 * 28 19 18 30 30 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 31 31 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 32 32 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47669 * 240.00169 * 2 1 3 34 34 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 35 35 H 0.97000 * 120.00114 * 354.93313 * 8 7 5 36 36 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 37 37 H 1.09001 * 110.78599 * 335.90963 * 18 16 14 38 38 H 1.08997 * 110.79420 * 99.37803 * 18 16 14 39 39 H 1.08003 * 119.90927 * 180.23381 * 23 21 20 40 40 H 1.08000 * 119.81534 * 179.74344 * 24 23 21 41 41 H 1.07995 * 119.90744 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6599 -1.3861 15 8 -0.3353 2.6306 -0.4609 16 6 0.0616 3.3288 -2.6799 17 1 0.2163 2.6581 -3.5251 18 6 0.8392 4.6526 -2.8730 19 6 -0.2007 5.5565 -3.5072 20 6 0.0680 6.8326 -4.1963 21 6 0.3264 6.8487 -5.5707 22 9 0.3312 5.6944 -6.2727 23 6 0.5725 8.0493 -6.2095 24 6 0.5737 9.2316 -5.4915 25 6 0.3244 9.2238 -4.1310 26 6 0.0712 8.0324 -3.4778 27 9 -0.1716 8.0269 -2.1488 28 7 -1.3620 5.0167 -3.3400 29 8 -1.3027 3.7936 -2.6331 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.8788 0.5739 0.4635 36 1 2.2909 2.1165 -1.9977 37 1 1.1660 5.0528 -1.9132 38 1 1.6873 4.5091 -3.5425 39 1 0.7684 8.0641 -7.2715 40 1 0.7709 10.1660 -5.9960 41 1 0.3276 10.1512 -3.5777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279151149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:39 Heat of formation + Delta-G solvation = -77.573198 kcal Electronic energy + Delta-G solvation = -29019.919635 eV Core-core repulsion = 24538.151324 eV Total energy + Delta-G solvation = -4481.768311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.50252 -49.43261 -40.68042 -39.29331 -38.60514 -35.33814 -34.01811 -32.67245 -31.90424 -30.92471 -30.68518 -30.48481 -27.31351 -24.70875 -24.25021 -23.36113 -22.37724 -20.95754 -20.44929 -19.65336 -18.63383 -18.13089 -17.74857 -17.26867 -16.89781 -16.50752 -16.12686 -15.95980 -15.74951 -15.65849 -15.45392 -14.88549 -14.65725 -14.53399 -13.63654 -13.45699 -13.32991 -13.28186 -12.97039 -12.67819 -12.58511 -12.47680 -12.42848 -12.38216 -12.14376 -11.93536 -11.61640 -11.19545 -10.83263 -10.75436 -10.50134 -10.00703 -9.86703 -9.73616 -9.52003 -9.33455 -9.19650 -9.13911 -8.37469 -8.20587 -6.64432 -4.27681 0.21924 0.40298 1.30332 2.53322 2.71174 3.01484 3.20430 3.38387 3.43201 3.47402 3.58418 3.81928 3.96141 4.10033 4.21612 4.27886 4.35793 4.39986 4.52324 4.75305 4.91720 5.07977 5.11379 5.19284 5.21742 5.34164 5.40374 5.44652 5.55910 5.57507 6.04128 6.07344 6.11807 6.24352 6.65169 6.76362 6.89373 6.99142 7.01120 7.29192 7.31581 7.57068 8.18053 8.31756 8.60836 8.82506 9.39302 10.74395 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.002877 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.377692 B = 9730.788171 C =10148.792438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.249 3.751 4 H 0.045 0.955 5 C -0.624 4.624 6 H 0.063 0.937 7 C 0.046 3.954 8 N -0.891 5.891 9 Si 1.032 2.968 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.283 1.283 13 N -0.694 5.694 14 C 0.507 3.493 15 O -0.521 6.521 16 C 0.024 3.976 17 H 0.111 0.889 18 C -0.132 4.132 19 C 0.116 3.884 20 C -0.104 4.104 21 C 0.159 3.841 22 F -0.121 7.121 23 C -0.163 4.163 24 C -0.047 4.047 25 C -0.163 4.163 26 C 0.161 3.839 27 F -0.118 7.118 28 N -0.258 5.258 29 O -0.155 6.155 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.271 0.729 36 H 0.393 0.607 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 16.977 -17.033 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.146 3.854 4 H 0.063 0.937 5 C -0.661 4.661 6 H 0.081 0.919 7 C -0.162 4.162 8 N -0.523 5.523 9 Si 0.859 3.141 10 H -0.209 1.209 11 H -0.193 1.193 12 H -0.209 1.209 13 N -0.343 5.343 14 C 0.289 3.711 15 O -0.398 6.398 16 C -0.038 4.038 17 H 0.128 0.872 18 C -0.171 4.171 19 C -0.077 4.077 20 C -0.107 4.107 21 C 0.138 3.862 22 F -0.099 7.099 23 C -0.182 4.182 24 C -0.066 4.066 25 C -0.182 4.182 26 C 0.140 3.860 27 F -0.096 7.096 28 N 0.005 4.995 29 O -0.176 6.176 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.226 0.774 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.954 16.480 -14.745 23.857 hybrid contribution 1.158 -0.121 -1.808 2.151 sum -7.796 16.359 -16.553 24.544 Atomic orbital electron populations 1.21905 0.97278 0.99067 1.02054 1.22214 0.93795 0.99540 1.01270 1.19186 0.95917 0.88616 0.81658 0.93703 1.22016 0.89491 1.49765 1.04852 0.91914 1.25630 0.96830 0.91901 1.01796 1.70836 1.10483 1.39936 1.31085 0.84206 0.76465 0.77519 0.75940 1.20914 1.19259 1.20883 1.46214 1.13803 1.55750 1.18582 1.19740 0.83453 0.80079 0.87833 1.90733 1.50461 1.58540 1.40029 1.23701 0.83936 0.96586 0.99572 0.87151 1.22970 0.99437 0.91036 1.03687 1.23679 0.93519 0.94320 0.96221 1.17719 1.10676 0.90070 0.92281 1.17364 0.98972 0.82609 0.87267 1.91579 1.93348 1.47080 1.77910 1.21181 1.04591 0.90486 1.01972 1.21023 0.94494 0.98329 0.92706 1.21212 1.04075 0.97156 0.95712 1.17417 0.98005 0.92444 0.78111 1.91610 1.90991 1.97131 1.29874 1.78564 1.20370 0.95790 1.04744 1.91393 1.24451 1.29733 1.72037 0.92853 0.93377 0.94905 0.93048 0.91978 0.91904 0.77371 0.86768 0.86823 0.83176 0.83245 0.83124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.53 37.16 0.32 -2.69 16 2 C -0.13 -2.86 5.03 -26.73 -0.13 -2.99 16 3 C 0.25 5.81 1.78 -69.08 -0.12 5.69 16 4 H 0.05 1.15 5.99 -51.93 -0.31 0.84 16 5 C -0.62 -16.30 8.97 -34.44 -0.31 -16.61 16 6 H 0.06 1.70 7.96 -52.49 -0.42 1.28 16 7 C 0.05 1.27 5.25 -17.82 -0.09 1.17 16 8 N -0.89 -25.93 13.70 55.43 0.76 -25.17 16 9 Si 1.03 24.71 26.33 -169.99 -4.48 20.23 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.14 5.88 56.52 0.33 -5.80 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 N -0.69 -13.46 5.03 -54.93 -0.28 -13.74 16 14 C 0.51 9.76 5.73 -10.99 -0.06 9.70 16 15 O -0.52 -12.08 13.73 -13.29 -0.18 -12.26 16 16 C 0.02 0.38 4.23 -26.97 -0.11 0.27 16 17 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 18 C -0.13 -1.72 6.60 -26.48 -0.17 -1.90 16 19 C 0.12 1.57 6.06 -79.47 -0.48 1.09 16 20 C -0.10 -1.13 5.85 -104.92 -0.61 -1.74 16 21 C 0.16 1.41 7.29 -38.99 -0.28 1.13 16 22 F -0.12 -1.23 16.83 2.25 0.04 -1.20 16 23 C -0.16 -0.91 10.01 -39.56 -0.40 -1.31 16 24 C -0.05 -0.20 10.03 -39.52 -0.40 -0.60 16 25 C -0.16 -0.99 10.01 -39.56 -0.40 -1.38 16 26 C 0.16 1.56 7.29 -38.99 -0.28 1.28 16 27 F -0.12 -1.42 16.83 2.25 0.04 -1.38 16 28 N -0.26 -4.23 12.54 35.27 0.44 -3.79 16 29 O -0.16 -2.85 11.82 -30.21 -0.36 -3.21 16 30 H 0.05 1.16 7.88 -51.93 -0.41 0.75 16 31 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16 32 H 0.03 0.59 8.14 -51.94 -0.42 0.17 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.42 5.64 -51.93 -0.29 1.13 16 35 H 0.27 7.76 8.73 -40.82 -0.36 7.41 16 36 H 0.39 6.58 8.53 -40.82 -0.35 6.23 16 37 H 0.11 1.58 7.90 -51.93 -0.41 1.17 16 38 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.15 0.48 8.06 -52.48 -0.42 0.05 16 40 H 0.15 0.14 8.06 -52.49 -0.42 -0.28 16 41 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -33.57 354.55 -6.88 -40.45 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.66 Total: 3.62 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -3.55 Total: -8.90 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.93 Total: -42.70 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.54 Total: -15.47 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.57 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -4.48 Total: 20.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.57 -6.88 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279151149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.125 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds