Wall clock time and date at job start Tue Mar 31 2020 21:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47229 * 2 1 4 4 C 1.50708 * 109.47007 * 119.99647 * 2 1 3 5 5 O 1.21281 * 119.99904 * 5.48301 * 4 2 1 6 6 N 1.34777 * 119.99915 * 185.47451 * 4 2 1 7 7 C 1.46961 * 120.59144 * 173.76194 * 6 4 2 8 8 C 1.53809 * 108.39772 * 124.76102 * 7 6 4 9 9 N 1.46961 * 108.58139 * 49.63954 * 8 7 6 10 10 C 1.36932 * 120.59735 * 124.62165 * 9 8 7 11 11 H 1.07998 * 120.00406 * 208.84613 * 10 9 8 12 12 C 1.38815 * 119.99995 * 28.85456 * 10 9 8 13 13 N 1.31619 * 119.99836 * 15.66197 * 12 10 9 14 14 Si 1.86797 * 119.99836 * 195.66790 * 12 10 9 15 15 H 1.48498 * 109.47452 * 59.99900 * 14 12 10 16 16 H 1.48502 * 109.46946 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47112 * 299.99640 * 14 12 10 18 18 C 1.46966 * 118.80764 * 304.64663 * 9 8 7 19 19 C 1.46967 * 120.59397 * 354.04341 * 6 4 2 20 20 C 1.50697 * 109.47196 * 239.99574 * 2 1 3 21 21 C 1.38242 * 119.98947 * 283.35440 * 20 2 1 22 22 C 1.38220 * 120.01076 * 179.72512 * 21 20 2 23 23 C 1.38343 * 119.98761 * 0.54815 * 22 21 20 24 24 Cl 1.73600 * 120.01622 * 179.70423 * 23 22 21 25 25 C 1.38357 * 119.97566 * 359.72538 * 23 22 21 26 26 C 1.38211 * 119.98393 * 359.97438 * 25 23 22 27 27 H 1.09000 * 109.47357 * 300.00018 * 1 2 3 28 28 H 1.08997 * 109.46983 * 59.99840 * 1 2 3 29 29 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 30 30 H 0.96707 * 114.00086 * 185.53589 * 3 2 1 31 31 H 1.09010 * 109.60939 * 244.54424 * 7 6 4 32 32 H 1.09003 * 109.60906 * 5.05380 * 7 6 4 33 33 H 1.09002 * 109.74413 * 289.84479 * 8 7 6 34 34 H 1.09007 * 109.52889 * 169.30165 * 8 7 6 35 35 H 0.97001 * 120.00146 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.60810 * 295.48128 * 18 9 8 37 37 H 1.08998 * 109.60971 * 174.97262 * 18 9 8 38 38 H 1.09001 * 109.60888 * 354.94241 * 19 6 4 39 39 H 1.09001 * 109.60464 * 115.45474 * 19 6 4 40 40 H 1.07992 * 119.99030 * 359.97438 * 21 20 2 41 41 H 1.07995 * 120.00399 * 180.26858 * 22 21 20 42 42 H 1.07997 * 120.01122 * 179.97438 * 25 23 22 43 43 H 1.08009 * 119.99204 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.2487 -1.2573 1.9773 6 7 3.3524 -0.7379 1.5011 7 6 3.8455 -1.3065 2.7634 8 6 4.8738 -2.4018 2.4335 9 7 5.8454 -1.8582 1.4743 10 6 7.1865 -1.8854 1.7496 11 1 7.8381 -1.1297 1.3363 12 6 7.7087 -2.8843 2.5598 13 7 7.0007 -3.9650 2.8111 14 14 9.4161 -2.6946 3.2934 15 1 9.4553 -1.4816 4.1491 16 1 9.7376 -3.8896 4.1144 17 1 10.4125 -2.5618 2.2004 18 6 5.3519 -1.2845 0.2144 19 6 4.3240 -0.1944 0.5417 20 6 2.0324 -0.7105 -1.2304 21 6 2.0020 -2.0912 -1.2918 22 6 2.4573 -2.7431 -2.4224 23 6 2.9541 -2.0141 -3.4880 24 17 3.5333 -2.8324 -4.9052 25 6 2.9895 -0.6324 -3.4237 26 6 2.5281 0.0186 -2.2952 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 2.9665 1.4249 -0.0852 31 1 4.3181 -0.5240 3.3571 32 1 3.0136 -1.7390 3.3194 33 1 4.3678 -3.2616 1.9944 34 1 5.3894 -2.7039 3.3451 35 1 7.3654 -4.6629 3.3776 36 1 4.8800 -2.0648 -0.3827 37 1 6.1834 -0.8489 -0.3396 38 1 3.8083 0.1077 -0.3698 39 1 4.8299 0.6654 0.9810 40 1 1.6186 -2.6603 -0.4579 41 1 2.4295 -3.8215 -2.4720 42 1 3.3776 -0.0628 -4.2551 43 1 2.5554 1.0971 -2.2450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293247398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:51 Heat of formation + Delta-G solvation = -40.714721 kcal Electronic energy + Delta-G solvation = -28648.826006 eV Core-core repulsion = 24720.452679 eV Total energy + Delta-G solvation = -3928.373327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26950 -40.08304 -38.65318 -38.13251 -37.25556 -35.65569 -33.34420 -33.09148 -32.10432 -31.96750 -30.32291 -28.86766 -26.19951 -25.14262 -24.36143 -23.94878 -23.07302 -21.71425 -20.68403 -19.07770 -19.01315 -18.04807 -17.59415 -17.14518 -16.77119 -16.45670 -16.08468 -15.72086 -15.55162 -15.49480 -15.20406 -14.99760 -14.77973 -14.56958 -14.36147 -13.96119 -13.75710 -13.47633 -13.35293 -13.13943 -13.04268 -12.85845 -12.68532 -12.59785 -12.54722 -12.41928 -12.35151 -12.05732 -11.97431 -11.87072 -11.82704 -11.67699 -10.70951 -10.59850 -10.08672 -9.90597 -9.62121 -8.67455 -7.89027 -5.39062 -0.04030 0.23064 1.10652 1.35000 1.48802 1.51014 1.57208 1.86881 2.47964 2.50818 2.98943 3.17865 3.26714 3.38708 3.52975 3.76876 3.87081 3.94766 4.10780 4.15622 4.25320 4.29857 4.37229 4.40895 4.57452 4.60461 4.71456 4.72829 4.74652 4.82954 4.90191 5.00154 5.08805 5.14019 5.18020 5.18207 5.32326 5.40556 5.58249 5.64606 5.68611 6.31212 6.34247 6.37123 6.96629 7.08598 7.77290 8.30728 9.16108 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010621 B = 0.004513 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.771991 B = 6202.723163 C = 7914.078686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.175 3.825 3 O -0.539 6.539 4 C 0.489 3.511 5 O -0.574 6.574 6 N -0.592 5.592 7 C 0.098 3.902 8 C 0.173 3.827 9 N -0.604 5.604 10 C -0.263 4.263 11 H 0.076 0.924 12 C -0.048 4.048 13 N -0.937 5.937 14 Si 0.968 3.032 15 H -0.276 1.276 16 H -0.299 1.299 17 H -0.274 1.274 18 C 0.134 3.866 19 C 0.084 3.916 20 C -0.117 4.117 21 C -0.099 4.099 22 C -0.112 4.112 23 C -0.035 4.035 24 Cl -0.069 7.069 25 C -0.099 4.099 26 C -0.087 4.087 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.389 0.611 31 H 0.071 0.929 32 H 0.075 0.925 33 H -0.009 1.009 34 H 0.071 0.929 35 H 0.250 0.750 36 H 0.011 0.989 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.134 0.866 42 H 0.164 0.836 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.884 10.593 -13.480 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.131 3.869 3 O -0.350 6.350 4 C 0.276 3.724 5 O -0.454 6.454 6 N -0.324 5.324 7 C -0.026 4.026 8 C 0.046 3.954 9 N -0.327 5.327 10 C -0.393 4.393 11 H 0.094 0.906 12 C -0.243 4.243 13 N -0.583 5.583 14 Si 0.796 3.204 15 H -0.202 1.202 16 H -0.225 1.225 17 H -0.200 1.200 18 C 0.008 3.992 19 C -0.039 4.039 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.061 4.061 24 Cl -0.040 7.040 25 C -0.117 4.117 26 C -0.105 4.105 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.243 0.757 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.009 0.991 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.152 0.848 42 H 0.182 0.818 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.771 10.232 -13.074 19.790 hybrid contribution 1.604 -1.205 0.692 2.122 sum -9.166 9.027 -12.383 17.856 Atomic orbital electron populations 1.21590 0.88296 1.03549 1.04068 1.20112 0.97276 0.81824 0.87688 1.86648 1.29432 1.23024 1.95898 1.21820 0.81972 0.80459 0.88110 1.90647 1.55794 1.47408 1.51532 1.48120 1.05660 1.58807 1.19764 1.22281 0.97398 0.97408 0.85497 1.20936 0.88706 0.91102 0.94681 1.44162 1.02402 1.70417 1.15711 1.19523 0.84633 1.06774 1.28343 0.90604 1.25844 1.01356 0.94415 1.02702 1.70157 1.39582 1.07686 1.40844 0.85331 0.80111 0.76605 0.78315 1.20163 1.22548 1.19968 1.21318 0.95872 0.93930 0.88050 1.22692 0.90974 0.97731 0.92541 1.20257 1.01185 0.93899 0.96476 1.20846 0.99264 0.94177 0.97464 1.21076 0.98811 1.00907 0.92265 1.21121 1.01753 0.93719 0.89522 1.98378 1.87268 1.79448 1.38914 1.21329 0.99188 0.91564 0.99632 1.21197 0.96426 1.01878 0.90998 0.91550 0.88699 0.90789 0.75704 0.91120 0.90671 0.99135 0.91085 0.94077 0.97127 0.90298 0.87553 0.89376 0.87146 0.84790 0.81849 0.81256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 8.10 71.98 0.58 -2.08 16 2 C 0.18 4.28 0.92 -12.28 -0.01 4.27 16 3 O -0.54 -11.19 11.81 -148.98 -1.76 -12.95 16 4 C 0.49 16.13 5.64 87.66 0.49 16.63 16 5 O -0.57 -22.80 15.40 -3.03 -0.05 -22.85 16 6 N -0.59 -20.00 2.94 -817.14 -2.40 -22.41 16 7 C 0.10 3.89 6.63 86.56 0.57 4.46 16 8 C 0.17 8.29 5.52 86.56 0.48 8.77 16 9 N -0.60 -28.52 2.97 -697.36 -2.07 -30.59 16 10 C -0.26 -13.56 9.58 84.03 0.81 -12.75 16 11 H 0.08 3.71 7.88 -2.91 -0.02 3.69 16 12 C -0.05 -2.56 4.95 84.86 0.42 -2.14 16 13 N -0.94 -54.33 11.13 21.65 0.24 -54.09 16 14 Si 0.97 43.21 29.58 68.60 2.03 45.24 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 C 0.13 4.98 6.67 86.41 0.58 5.56 16 19 C 0.08 2.38 4.88 86.41 0.42 2.80 16 20 C -0.12 -2.58 3.05 -19.86 -0.06 -2.64 16 21 C -0.10 -2.56 9.12 22.27 0.20 -2.35 16 22 C -0.11 -2.70 9.83 22.29 0.22 -2.48 16 23 C -0.03 -0.73 6.32 22.32 0.14 -0.59 16 24 Cl -0.07 -1.42 28.96 -2.72 -0.08 -1.49 16 25 C -0.10 -1.64 9.83 22.29 0.22 -1.42 16 26 C -0.09 -1.43 8.09 22.27 0.18 -1.25 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.75 8.04 -2.39 -0.02 1.73 16 30 H 0.39 6.33 5.41 -74.05 -0.40 5.93 16 31 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 32 H 0.07 3.06 6.99 -2.39 -0.02 3.04 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.07 3.84 5.98 -2.38 -0.01 3.82 16 35 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 2.71 7.93 -2.39 -0.02 2.69 16 38 H 0.11 2.30 2.48 -2.39 -0.01 2.29 16 39 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.11 3.30 7.51 -2.91 -0.02 3.27 16 41 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 42 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.17 1.83 7.05 -2.91 -0.02 1.81 16 Total: -1.00 -66.73 355.77 1.80 -64.93 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.65 Total: 19.44 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 5.24 Total: 14.77 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -4.23 Total: -107.08 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.81 Total: -35.80 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.49 kcal Total: -66.73 1.80 -64.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293247398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.212 kcal (2) G-P(sol) polarization free energy of solvation -66.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds