Wall clock time and date at job start Tue Mar 31 2020 21:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 120.00134 * 2 1 4 4 N 1.46507 * 109.46638 * 124.99783 * 3 2 1 5 5 C 1.46499 * 119.99971 * 270.00035 * 4 3 2 6 6 C 1.50706 * 109.47119 * 270.00200 * 5 4 3 7 7 H 1.07997 * 119.99651 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99828 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00279 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46911 * 60.00079 * 10 8 6 12 12 H 1.48502 * 109.47158 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.46978 * 300.00021 * 10 8 6 14 14 C 1.34775 * 119.99851 * 90.00821 * 4 3 2 15 15 O 1.21283 * 119.99925 * 179.97438 * 14 4 3 16 16 C 1.50703 * 120.00069 * 359.97438 * 14 4 3 17 17 N 1.46499 * 109.47138 * 180.02562 * 16 14 4 18 18 C 1.34777 * 119.99665 * 180.28062 * 17 16 14 19 19 O 1.21553 * 120.00289 * 359.72074 * 18 17 16 20 20 C 1.47855 * 119.99755 * 179.72373 * 18 17 16 21 21 C 1.39556 * 120.12310 * 359.72066 * 20 18 17 22 22 C 1.38200 * 119.88051 * 179.81091 * 21 20 18 23 23 F 1.35100 * 119.94148 * 180.23269 * 22 21 20 24 24 C 1.38530 * 120.11673 * 0.44354 * 22 21 20 25 25 C 1.38530 * 120.24941 * 359.78655 * 24 22 21 26 26 F 1.35093 * 119.94038 * 179.97438 * 25 24 22 27 27 C 1.38204 * 120.11647 * 0.02562 * 25 24 22 28 28 H 1.08000 * 119.99992 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99710 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99978 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46715 * 5.00582 * 3 2 1 32 32 H 1.08991 * 109.47191 * 244.99916 * 3 2 1 33 33 H 1.08998 * 109.47138 * 30.00322 * 5 4 3 34 34 H 1.08996 * 109.46665 * 150.00661 * 5 4 3 35 35 H 0.97006 * 120.00308 * 179.97438 * 9 8 6 36 36 H 1.09009 * 109.46601 * 60.00324 * 16 14 4 37 37 H 1.08998 * 109.47035 * 300.00831 * 16 14 4 38 38 H 0.97001 * 119.99790 * 359.97438 * 17 16 14 39 39 H 1.08001 * 120.05299 * 0.02562 * 21 20 18 40 40 H 1.08004 * 119.87318 * 179.76103 * 24 22 21 41 41 H 1.08007 * 120.05811 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5588 1.8648 2.4250 6 6 2.8443 3.3435 2.4806 7 1 3.3034 3.8369 1.6367 8 6 2.5193 4.0663 3.6088 9 7 1.9599 3.4656 4.6362 10 14 2.8725 5.8994 3.6775 11 1 2.1358 6.5866 2.5865 12 1 2.4317 6.4397 4.9886 13 1 4.3301 6.1292 3.5116 14 6 4.2497 0.8661 0.9825 15 8 5.0200 0.8886 1.9191 16 6 4.6970 0.3174 -0.3479 17 7 6.0913 -0.1216 -0.2512 18 6 6.7091 -0.6454 -1.3285 19 8 6.1078 -0.7582 -2.3789 20 6 8.1181 -1.0829 -1.2326 21 6 8.8127 -0.9493 -0.0295 22 6 10.1284 -1.3635 0.0556 23 9 10.8004 -1.2391 1.2209 24 6 10.7607 -1.9020 -1.0531 25 6 10.0776 -2.0326 -2.2512 26 9 10.7005 -2.5581 -3.3287 27 6 8.7604 -1.6252 -2.3465 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6213 1.4026 -0.9313 33 1 1.4887 1.6965 2.5460 34 1 3.0989 1.3601 3.2260 35 1 1.7316 3.9741 5.4301 36 1 4.6121 1.0940 -1.1082 37 1 4.0678 -0.5294 -0.6218 38 1 6.5712 -0.0313 0.5869 39 1 8.3216 -0.5262 0.8343 40 1 11.7902 -2.2209 -0.9833 41 1 8.2289 -1.7271 -3.2812 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293792651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:12 Heat of formation + Delta-G solvation = -107.358259 kcal Electronic energy + Delta-G solvation = -27982.082227 eV Core-core repulsion = 23499.022338 eV Total energy + Delta-G solvation = -4483.059888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.43073 -49.38222 -40.55549 -39.31435 -38.20459 -35.95077 -34.63651 -33.26396 -32.21265 -31.82394 -30.81246 -28.84493 -26.99379 -25.53645 -24.51505 -23.23872 -22.61933 -20.90923 -20.08398 -19.45458 -18.39948 -17.66895 -17.00003 -16.86734 -16.64744 -16.44590 -16.39048 -15.95530 -15.72826 -15.70022 -15.57916 -15.18155 -14.75241 -14.73037 -14.44042 -14.29303 -13.63628 -13.28841 -13.15758 -12.67859 -12.55916 -12.39631 -12.29686 -12.26967 -12.02889 -11.77451 -11.37268 -11.13279 -10.98129 -10.66906 -10.36307 -10.26451 -9.76462 -9.63943 -9.30698 -9.26570 -9.25839 -9.20407 -8.50549 -7.88797 -6.11956 -4.17458 0.09841 0.48332 2.30050 2.36815 2.72052 3.09032 3.20851 3.27327 3.32154 3.35127 3.39229 3.81874 3.84682 4.11527 4.29316 4.37944 4.51645 4.54467 4.78647 5.00670 5.14150 5.22815 5.27365 5.30000 5.34691 5.40141 5.42642 5.49813 5.57985 5.60794 5.95034 6.06586 6.12959 6.21557 6.73339 6.80870 6.94432 7.26313 7.31496 7.38946 7.82780 7.89432 8.12763 8.18839 8.68799 8.88566 9.47853 10.96151 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.002626 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.170433 B =10660.975490 C =12207.241305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.171 4.171 3 C 0.131 3.869 4 N -0.584 5.584 5 C 0.247 3.753 6 C -0.531 4.531 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.500 3.500 15 O -0.539 6.539 16 C 0.097 3.903 17 N -0.704 5.704 18 C 0.561 3.439 19 O -0.531 6.531 20 C -0.071 4.071 21 C -0.130 4.130 22 C 0.129 3.871 23 F -0.124 7.124 24 C -0.170 4.170 25 C 0.124 3.876 26 F -0.126 7.126 27 C -0.106 4.106 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.413 0.587 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.702 -11.365 -13.203 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.191 4.191 3 C 0.008 3.992 4 N -0.314 5.314 5 C 0.129 3.871 6 C -0.569 4.569 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.285 3.715 15 O -0.417 6.417 16 C -0.030 4.030 17 N -0.358 5.358 18 C 0.347 3.653 19 O -0.409 6.409 20 C -0.074 4.074 21 C -0.150 4.150 22 C 0.109 3.891 23 F -0.103 7.103 24 C -0.190 4.190 25 C 0.105 3.895 26 F -0.105 7.105 27 C -0.125 4.125 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.253 0.747 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.604 -11.370 -13.200 20.395 hybrid contribution 0.550 0.986 0.590 1.273 sum 11.154 -10.384 -12.610 19.780 Atomic orbital electron populations 1.23836 0.95819 1.01883 1.00028 1.23379 0.96479 0.98832 1.00379 1.20690 0.93303 0.95767 0.89480 1.48191 1.09980 1.59226 1.14032 1.19345 0.95634 0.93857 0.78290 1.21363 1.41045 0.93178 1.01360 0.92423 1.24923 0.94923 0.98817 0.95288 1.69917 1.41701 1.36379 1.05176 0.86552 0.78851 0.84761 0.77229 1.20203 1.21145 1.20152 1.20143 0.83099 0.79158 0.89058 1.90668 1.52509 1.56973 1.41548 1.21298 0.82754 1.01320 0.97619 1.45653 1.13434 1.62250 1.14487 1.17882 0.85625 0.78054 0.83775 1.90804 1.66245 1.55316 1.28513 1.19512 0.94225 1.00487 0.93177 1.21519 0.93349 1.00971 0.99148 1.17063 0.90217 0.99833 0.81946 1.91585 1.79824 1.93579 1.45283 1.21239 1.02502 1.03758 0.91454 1.17063 0.90823 0.98082 0.83557 1.91562 1.82270 1.83785 1.52870 1.21282 0.92812 0.98003 1.00452 0.88672 0.88192 0.87700 0.88980 0.90460 0.94639 0.93714 0.92561 0.88376 0.88475 0.74742 0.82965 0.82859 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 14.32 29.01 0.42 -1.75 16 2 C -0.17 -2.27 9.74 -36.03 -0.35 -2.63 16 3 C 0.13 1.97 5.65 -5.19 -0.03 1.94 16 4 N -0.58 -11.34 2.44 -176.43 -0.43 -11.77 16 5 C 0.25 6.11 5.16 -5.19 -0.03 6.09 16 6 C -0.53 -14.36 9.39 -34.44 -0.32 -14.69 16 7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 10 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 14 C 0.50 9.32 7.74 -10.98 -0.09 9.24 16 15 O -0.54 -11.96 15.25 5.56 0.08 -11.87 16 16 C 0.10 1.37 4.71 -5.19 -0.02 1.34 16 17 N -0.70 -9.29 5.48 -62.42 -0.34 -9.64 16 18 C 0.56 7.17 7.77 -12.32 -0.10 7.07 16 19 O -0.53 -8.02 16.35 5.32 0.09 -7.94 16 20 C -0.07 -0.74 5.87 -104.98 -0.62 -1.35 16 21 C -0.13 -1.23 9.52 -39.10 -0.37 -1.61 16 22 C 0.13 1.16 7.29 -39.49 -0.29 0.88 16 23 F -0.12 -1.23 17.26 2.25 0.04 -1.19 16 24 C -0.17 -1.34 10.00 -39.37 -0.39 -1.73 16 25 C 0.12 1.07 7.29 -39.49 -0.29 0.79 16 26 F -0.13 -1.13 17.26 2.25 0.04 -1.09 16 27 C -0.11 -1.00 9.57 -39.11 -0.37 -1.38 16 28 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 30 H 0.11 1.31 7.83 -52.49 -0.41 0.90 16 31 H 0.09 1.44 7.72 -51.93 -0.40 1.04 16 32 H 0.08 0.96 6.44 -51.93 -0.33 0.62 16 33 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.10 1.30 7.40 -51.92 -0.38 0.91 16 37 H 0.10 1.23 7.77 -51.93 -0.40 0.83 16 38 H 0.41 5.36 5.47 -40.82 -0.22 5.14 16 39 H 0.15 1.36 6.40 -52.49 -0.34 1.02 16 40 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.16 1.44 7.65 -52.48 -0.40 1.04 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -31.86 369.91 -6.68 -38.55 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.50 Total: 4.36 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.95 Total: 3.85 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.04 Total: -46.43 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.17 Total: -19.81 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.08 Total: -2.28 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.86 -6.68 -38.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293792651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.811 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds