Wall clock time and date at job start Tue Mar 31 2020 21:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 120.00134 * 2 1 4 4 N 1.46507 * 109.46638 * 124.99783 * 3 2 1 5 5 C 1.46499 * 119.99971 * 270.00035 * 4 3 2 6 6 C 1.50706 * 109.47119 * 270.00200 * 5 4 3 7 7 H 1.07997 * 119.99651 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99828 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00279 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46911 * 60.00079 * 10 8 6 12 12 H 1.48502 * 109.47158 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.46978 * 300.00021 * 10 8 6 14 14 C 1.34775 * 119.99851 * 90.00821 * 4 3 2 15 15 O 1.21283 * 119.99925 * 179.97438 * 14 4 3 16 16 C 1.50703 * 120.00069 * 359.97438 * 14 4 3 17 17 N 1.46499 * 109.47138 * 180.02562 * 16 14 4 18 18 C 1.34777 * 119.99665 * 180.28062 * 17 16 14 19 19 O 1.21553 * 120.00289 * 359.72074 * 18 17 16 20 20 C 1.47855 * 119.99755 * 179.72373 * 18 17 16 21 21 C 1.39556 * 120.12310 * 359.72066 * 20 18 17 22 22 C 1.38200 * 119.88051 * 179.81091 * 21 20 18 23 23 F 1.35100 * 119.94148 * 180.23269 * 22 21 20 24 24 C 1.38530 * 120.11673 * 0.44354 * 22 21 20 25 25 C 1.38530 * 120.24941 * 359.78655 * 24 22 21 26 26 F 1.35093 * 119.94038 * 179.97438 * 25 24 22 27 27 C 1.38204 * 120.11647 * 0.02562 * 25 24 22 28 28 H 1.08000 * 119.99992 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99710 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99978 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46715 * 5.00582 * 3 2 1 32 32 H 1.08991 * 109.47191 * 244.99916 * 3 2 1 33 33 H 1.08998 * 109.47138 * 30.00322 * 5 4 3 34 34 H 1.08996 * 109.46665 * 150.00661 * 5 4 3 35 35 H 0.97006 * 120.00308 * 179.97438 * 9 8 6 36 36 H 1.09009 * 109.46601 * 60.00324 * 16 14 4 37 37 H 1.08998 * 109.47035 * 300.00831 * 16 14 4 38 38 H 0.97001 * 119.99790 * 359.97438 * 17 16 14 39 39 H 1.08001 * 120.05299 * 0.02562 * 21 20 18 40 40 H 1.08004 * 119.87318 * 179.76103 * 24 22 21 41 41 H 1.08007 * 120.05811 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5588 1.8648 2.4250 6 6 2.8443 3.3435 2.4806 7 1 3.3034 3.8369 1.6367 8 6 2.5193 4.0663 3.6088 9 7 1.9599 3.4656 4.6362 10 14 2.8725 5.8994 3.6775 11 1 2.1358 6.5866 2.5865 12 1 2.4317 6.4397 4.9886 13 1 4.3301 6.1292 3.5116 14 6 4.2497 0.8661 0.9825 15 8 5.0200 0.8886 1.9191 16 6 4.6970 0.3174 -0.3479 17 7 6.0913 -0.1216 -0.2512 18 6 6.7091 -0.6454 -1.3285 19 8 6.1078 -0.7582 -2.3789 20 6 8.1181 -1.0829 -1.2326 21 6 8.8127 -0.9493 -0.0295 22 6 10.1284 -1.3635 0.0556 23 9 10.8004 -1.2391 1.2209 24 6 10.7607 -1.9020 -1.0531 25 6 10.0776 -2.0326 -2.2512 26 9 10.7005 -2.5581 -3.3287 27 6 8.7604 -1.6252 -2.3465 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6213 1.4026 -0.9313 33 1 1.4887 1.6965 2.5460 34 1 3.0989 1.3601 3.2260 35 1 1.7316 3.9741 5.4301 36 1 4.6121 1.0940 -1.1082 37 1 4.0678 -0.5294 -0.6218 38 1 6.5712 -0.0313 0.5869 39 1 8.3216 -0.5262 0.8343 40 1 11.7902 -2.2209 -0.9833 41 1 8.2289 -1.7271 -3.2812 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293792651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:11 Heat of formation + Delta-G solvation = -126.584470 kcal Electronic energy + Delta-G solvation = -27982.915938 eV Core-core repulsion = 23499.022338 eV Total energy + Delta-G solvation = -4483.893599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.13268 -50.11370 -41.60939 -40.65400 -39.11422 -37.37672 -35.80423 -35.06184 -33.70541 -32.65793 -31.56100 -30.38648 -28.45038 -26.90680 -25.57515 -24.44180 -23.85605 -21.87849 -21.24700 -20.53266 -19.60359 -18.63938 -18.46228 -18.00649 -17.76491 -17.49967 -17.20150 -17.01557 -16.88950 -16.78885 -16.45505 -16.41916 -16.01883 -15.96266 -15.55303 -15.40646 -14.88269 -14.56233 -14.25622 -14.03434 -13.85361 -13.67875 -13.32207 -13.15697 -13.03842 -13.00528 -12.98728 -12.86187 -12.57960 -12.24107 -12.20374 -11.69443 -11.40114 -10.82738 -10.63543 -10.49541 -10.31725 -10.21777 -9.98314 -9.54523 -8.22188 -6.36434 -0.65822 -0.23741 1.29899 1.38661 1.41663 1.43538 1.48828 1.62890 1.71037 2.33854 2.36452 2.46813 2.67219 3.08462 3.10988 3.30628 3.47338 3.58831 3.78938 3.83461 4.05286 4.16869 4.23462 4.25155 4.35365 4.46371 4.56370 4.68308 4.78945 4.84530 4.86906 4.94411 5.05430 5.09484 5.22852 5.47878 5.50197 5.72361 5.74779 5.93162 6.05089 6.24704 6.58522 6.73132 6.89544 7.18978 7.36700 8.84910 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.002626 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.170433 B =10660.975490 C =12207.241305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.186 4.186 3 C 0.128 3.872 4 N -0.589 5.589 5 C 0.265 3.735 6 C -0.543 4.543 7 H 0.056 0.944 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.277 1.277 14 C 0.496 3.504 15 O -0.582 6.582 16 C 0.111 3.889 17 N -0.706 5.706 18 C 0.566 3.434 19 O -0.555 6.555 20 C -0.082 4.082 21 C -0.127 4.127 22 C 0.122 3.878 23 F -0.129 7.129 24 C -0.151 4.151 25 C 0.125 3.875 26 F -0.126 7.126 27 C -0.102 4.102 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.024 0.976 34 H 0.003 0.997 35 H 0.267 0.733 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.414 0.586 39 H 0.154 0.846 40 H 0.178 0.822 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.439 -11.428 -14.872 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.205 4.205 3 C 0.007 3.993 4 N -0.319 5.319 5 C 0.144 3.856 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.789 3.211 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.202 1.202 14 C 0.284 3.716 15 O -0.463 6.463 16 C -0.016 4.016 17 N -0.361 5.361 18 C 0.354 3.646 19 O -0.435 6.435 20 C -0.085 4.085 21 C -0.147 4.147 22 C 0.103 3.897 23 F -0.108 7.108 24 C -0.171 4.171 25 C 0.105 3.895 26 F -0.105 7.105 27 C -0.122 4.122 28 H 0.134 0.866 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.042 0.958 34 H 0.021 0.979 35 H 0.076 0.924 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.253 0.747 39 H 0.171 0.829 40 H 0.196 0.804 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.329 -11.445 -14.913 21.948 hybrid contribution 0.323 0.945 1.100 1.486 sum 11.651 -10.500 -13.813 20.900 Atomic orbital electron populations 1.24059 0.95595 1.02908 0.98015 1.23319 0.96854 0.98242 1.02133 1.20920 0.92943 0.96615 0.88872 1.48123 1.11254 1.59043 1.13459 1.18754 0.94145 0.92701 0.80036 1.21672 1.40748 0.94383 1.01397 0.92582 1.25800 0.94661 1.03484 0.94921 1.70037 1.42702 1.38156 1.05768 0.85518 0.78549 0.79307 0.77756 1.18638 1.20611 1.20205 1.20871 0.82236 0.78222 0.90292 1.90642 1.53605 1.58563 1.43473 1.21199 0.83580 1.02264 0.94510 1.45685 1.13127 1.62434 1.14819 1.18103 0.86281 0.77220 0.83014 1.90788 1.67021 1.56434 1.29221 1.19258 0.93146 1.02133 0.93958 1.21531 0.93665 1.00620 0.98875 1.17080 0.90064 1.00394 0.82163 1.91577 1.79847 1.93699 1.45653 1.21436 1.03390 1.01844 0.90431 1.17000 0.90512 0.98172 0.83799 1.91569 1.82181 1.83789 1.52927 1.21318 0.93209 0.97468 1.00181 0.86645 0.88214 0.86691 0.89944 0.87447 0.95826 0.97934 0.92422 0.86828 0.86444 0.74654 0.82876 0.80424 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 14.32 67.78 0.97 -2.84 16 2 C -0.19 -4.69 9.74 25.64 0.25 -4.44 16 3 C 0.13 3.73 5.65 85.63 0.48 4.22 16 4 N -0.59 -23.12 2.44 -830.48 -2.03 -25.15 16 5 C 0.26 13.55 5.16 85.63 0.44 14.00 16 6 C -0.54 -29.97 9.39 25.60 0.24 -29.73 16 7 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.59 5.46 84.65 0.46 1.06 16 9 N -0.93 -54.60 13.29 21.45 0.28 -54.32 16 10 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 11 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 C 0.50 18.61 7.74 87.66 0.68 19.29 16 15 O -0.58 -26.62 15.25 -3.04 -0.05 -26.66 16 16 C 0.11 3.00 4.71 85.63 0.40 3.40 16 17 N -0.71 -18.16 5.48 -469.68 -2.57 -20.73 16 18 C 0.57 13.92 7.77 86.79 0.67 14.59 16 19 O -0.56 -16.07 16.35 -3.88 -0.06 -16.14 16 20 C -0.08 -1.62 5.87 -20.10 -0.12 -1.74 16 21 C -0.13 -2.30 9.52 22.58 0.21 -2.08 16 22 C 0.12 2.02 7.29 22.33 0.16 2.18 16 23 F -0.13 -2.38 17.26 44.97 0.78 -1.61 16 24 C -0.15 -2.04 10.00 22.41 0.22 -1.81 16 25 C 0.12 1.91 7.29 22.33 0.16 2.07 16 26 F -0.13 -2.00 17.26 44.97 0.78 -1.22 16 27 C -0.10 -1.79 9.57 22.58 0.22 -1.57 16 28 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.10 2.26 7.84 -2.91 -0.02 2.23 16 30 H 0.12 2.66 7.83 -2.91 -0.02 2.64 16 31 H 0.08 2.54 7.72 -2.38 -0.02 2.53 16 32 H 0.11 2.44 6.44 -2.39 -0.02 2.42 16 33 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 34 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 35 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 36 H 0.11 2.76 7.40 -2.38 -0.02 2.74 16 37 H 0.12 2.74 7.77 -2.39 -0.02 2.72 16 38 H 0.41 10.74 5.47 -92.71 -0.51 10.23 16 39 H 0.15 2.69 6.40 -2.91 -0.02 2.67 16 40 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.16 2.73 7.65 -2.91 -0.02 2.70 16 Total: -1.00 -69.75 369.91 5.20 -64.55 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.58 Total: 19.06 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 5.47 Total: 16.58 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -4.31 Total: -100.20 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -0.11 Total: -42.80 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 1.55 Total: -2.83 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -69.75 5.20 -64.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293792651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.034 kcal (2) G-P(sol) polarization free energy of solvation -69.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds