Wall clock time and date at job start Tue Mar 31 2020 20:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33636 * 122.74502 * 2 1 4 4 S 1.76194 * 107.92460 * 179.97438 * 3 2 1 5 5 C 1.70984 * 90.28056 * 0.27613 * 4 3 2 6 6 C 1.50706 * 124.91690 * 179.83904 * 5 4 3 7 7 C 1.50698 * 109.47177 * 269.99760 * 6 5 4 8 8 O 1.21285 * 119.99759 * 0.02562 * 7 6 5 9 9 N 1.34766 * 120.00090 * 179.97438 * 7 6 5 10 10 N 1.40103 * 120.00117 * 180.02562 * 9 7 6 11 11 C 1.34778 * 119.99804 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00288 * 0.02562 * 11 10 9 13 13 C 1.50708 * 119.99798 * 179.97438 * 11 10 9 14 14 N 1.46500 * 109.47058 * 180.02562 * 13 11 10 15 15 C 1.36931 * 119.99833 * 270.00210 * 14 13 11 16 16 H 1.08002 * 119.99798 * 192.63525 * 15 14 13 17 17 C 1.38808 * 120.00285 * 12.63067 * 15 14 13 18 18 N 1.31614 * 120.00021 * 25.30673 * 17 15 14 19 19 Si 1.86805 * 120.00114 * 205.31415 * 17 15 14 20 20 H 1.48499 * 109.47067 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47340 * 119.99793 * 19 17 15 22 22 H 1.48510 * 109.46888 * 239.99972 * 19 17 15 23 23 C 1.46498 * 119.99790 * 90.00125 * 14 13 11 24 24 C 1.52998 * 117.49681 * 194.11679 * 23 14 13 25 25 C 1.53005 * 117.49715 * 125.45617 * 23 14 13 26 26 N 1.29027 * 110.16772 * 359.83859 * 5 4 3 27 27 H 1.09008 * 109.47125 * 269.73069 * 1 2 3 28 28 H 1.08997 * 109.46836 * 149.73201 * 1 2 3 29 29 H 1.08994 * 109.47177 * 29.73201 * 1 2 3 30 30 H 1.08002 * 126.04087 * 0.04129 * 3 2 1 31 31 H 1.08998 * 109.46783 * 29.99601 * 6 5 4 32 32 H 1.09002 * 109.46844 * 149.99988 * 6 5 4 33 33 H 0.97003 * 119.99923 * 0.02562 * 9 7 6 34 34 H 0.96999 * 120.00109 * 359.97438 * 10 9 7 35 35 H 1.09002 * 109.47080 * 300.00397 * 13 11 10 36 36 H 1.08999 * 109.46589 * 59.99754 * 13 11 10 37 37 H 0.97005 * 120.00042 * 175.06152 * 18 17 15 38 38 H 1.08994 * 115.55285 * 339.78727 * 23 14 13 39 39 H 1.09000 * 117.50179 * 359.97438 * 24 23 14 40 40 H 1.08999 * 117.50125 * 145.02551 * 24 23 14 41 41 H 1.08997 * 117.49597 * 214.97465 * 25 23 14 42 42 H 1.08997 * 117.50086 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6733 0.0007 5 6 3.5040 -0.9818 -0.0073 6 6 4.4836 -2.1270 -0.0142 7 6 4.8085 -2.5015 -1.4373 8 8 4.2955 -1.8975 -2.3555 9 7 5.6699 -3.5067 -1.6897 10 7 5.9724 -3.8545 -3.0127 11 6 6.8335 -4.8602 -3.2650 12 8 7.3461 -5.4644 -2.3469 13 6 7.1584 -5.2347 -4.6882 14 7 8.1102 -6.3484 -4.6949 15 6 9.4565 -6.0983 -4.6950 16 1 10.1538 -6.8960 -4.9044 17 6 9.9250 -4.8197 -4.4259 18 7 9.1980 -3.9899 -3.7082 19 14 11.5873 -4.2766 -5.0828 20 1 12.2017 -5.3870 -5.8539 21 1 11.4086 -3.0980 -5.9682 22 1 12.4733 -3.9132 -3.9477 23 6 7.6216 -7.7294 -4.7016 24 6 8.6271 -8.8361 -4.3773 25 6 8.1271 -8.6523 -5.8124 26 7 2.2199 -1.1083 -0.0065 27 1 -0.3634 -0.0048 1.0277 28 1 -0.3633 -0.8876 -0.5180 29 1 -0.3633 0.8923 -0.5096 30 1 1.8391 2.1308 0.0006 31 1 5.3967 -1.8271 0.5001 32 1 4.0440 -2.9842 0.4958 33 1 6.0805 -3.9895 -0.9553 34 1 5.5616 -3.3720 -3.7471 35 1 6.2453 -5.5345 -5.2026 36 1 7.5979 -4.3774 -5.1981 37 1 9.5549 -3.1229 -3.4596 38 1 6.5952 -7.8667 -4.3616 39 1 9.6523 -8.5366 -4.1595 40 1 8.2622 -9.7015 -3.8243 41 1 7.4333 -9.3968 -6.2028 42 1 8.8228 -8.2317 -6.5385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299588929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:30 Heat of formation + Delta-G solvation = 70.080131 kcal Electronic energy + Delta-G solvation = -26353.440990 eV Core-core repulsion = 22464.208545 eV Total energy + Delta-G solvation = -3889.232445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.21754 -39.43602 -38.15687 -36.79297 -34.51963 -33.40129 -33.29668 -31.19095 -30.53150 -29.29404 -27.70384 -26.47216 -24.01114 -23.31577 -21.47673 -20.89250 -20.37894 -19.89139 -19.71359 -17.78367 -17.49834 -16.90751 -16.33602 -15.79023 -15.52051 -15.35307 -15.17489 -14.72277 -14.41714 -13.99027 -13.89077 -13.73203 -13.42467 -13.25369 -13.02151 -12.68011 -12.55906 -12.40214 -12.18852 -11.90975 -11.43908 -11.34000 -10.87992 -10.79517 -10.74209 -10.42467 -10.33593 -10.02804 -9.99179 -9.87935 -9.77161 -9.48137 -9.44714 -8.85868 -8.74457 -8.47112 -7.54256 -6.92614 -5.96059 -3.21886 0.54957 1.25125 1.63317 2.38932 2.68233 2.76880 3.31470 3.40565 3.42764 3.82519 4.09907 4.34727 4.47271 4.65156 4.82683 4.95643 5.01746 5.04599 5.07196 5.17831 5.28133 5.35481 5.37106 5.49951 5.71556 5.80263 5.95980 6.06970 6.08186 6.09572 6.40614 6.44944 6.49448 6.83044 6.93675 7.04159 7.28517 7.43627 7.63201 7.71643 8.11026 8.37442 8.50036 9.00463 9.52987 9.70287 10.09815 11.13437 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.002479 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.496948 B =11290.978669 C =12348.903364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.068 3.932 3 C -0.268 4.268 4 S 0.140 5.860 5 C 0.076 3.924 6 C -0.060 4.060 7 C 0.510 3.490 8 O -0.545 6.545 9 N -0.510 5.510 10 N -0.543 5.543 11 C 0.530 3.470 12 O -0.524 6.524 13 C 0.177 3.823 14 N -0.532 5.532 15 C -0.254 4.254 16 H 0.084 0.916 17 C 0.003 3.997 18 N -0.894 5.894 19 Si 0.908 3.092 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.292 1.292 23 C 0.128 3.872 24 C -0.200 4.200 25 C -0.220 4.220 26 N -0.463 5.463 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.175 0.825 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.427 0.573 34 H 0.417 0.583 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.256 0.744 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 7.362 7.224 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C -0.407 4.407 4 S 0.395 5.605 5 C -0.203 4.203 6 C -0.105 4.105 7 C 0.293 3.707 8 O -0.422 6.422 9 N -0.253 5.253 10 N -0.297 5.297 11 C 0.316 3.684 12 O -0.395 6.395 13 C 0.044 3.956 14 N -0.246 5.246 15 C -0.383 4.383 16 H 0.101 0.899 17 C -0.195 4.195 18 N -0.539 5.539 19 Si 0.738 3.262 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.220 1.220 23 C 0.018 3.982 24 C -0.239 4.239 25 C -0.261 4.261 26 N -0.178 5.178 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.193 0.807 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.268 0.732 34 H 0.256 0.744 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.570 7.532 7.228 16.340 hybrid contribution 0.221 0.520 0.032 0.566 sum -12.348 8.052 7.260 16.433 Atomic orbital electron populations 1.20347 0.87170 1.03404 1.02769 1.20255 0.98223 0.86451 1.01504 1.26808 0.95287 1.03920 1.14708 1.83974 1.07085 1.02451 1.66955 1.26009 0.93608 0.97576 1.03060 1.20126 0.97965 0.96529 0.95849 1.20159 0.79633 0.80102 0.90833 1.90727 1.52614 1.52896 1.45924 1.44700 1.44677 1.34764 1.01199 1.45967 1.49874 1.38648 0.95185 1.22820 0.74278 0.76632 0.94629 1.90531 1.49150 1.53544 1.46268 1.20575 0.91981 0.93074 0.89941 1.43620 1.02719 0.97694 1.80615 1.19240 0.82252 0.94578 1.42224 0.89860 1.24787 0.98403 0.97601 0.98750 1.69752 1.37580 1.10043 1.36485 0.86124 0.83096 0.78424 0.78567 1.20305 1.21446 1.21957 1.20951 0.95010 0.82767 0.99447 1.23142 1.01624 1.01079 0.98056 1.23417 1.05206 1.04892 0.92603 1.66032 1.04355 1.31761 1.15688 0.90736 0.90520 0.90802 0.80726 0.86323 0.85551 0.73228 0.74374 0.93122 0.87898 0.93321 0.89095 0.88461 0.90569 0.90554 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.31 36.01 0.37 -0.28 16 2 C 0.07 0.80 6.74 -84.22 -0.57 0.23 16 3 C -0.27 -2.77 11.13 29.12 0.32 -2.44 16 4 S 0.14 1.56 23.18 -107.50 -2.49 -0.94 16 5 C 0.08 0.98 5.88 -13.45 -0.08 0.90 16 6 C -0.06 -0.68 6.28 -29.03 -0.18 -0.86 16 7 C 0.51 7.85 7.94 -10.99 -0.09 7.77 16 8 O -0.54 -10.20 15.87 5.55 0.09 -10.11 16 9 N -0.51 -8.44 6.26 31.22 0.20 -8.25 16 10 N -0.54 -10.29 6.26 31.22 0.20 -10.10 16 11 C 0.53 11.72 5.91 -10.98 -0.06 11.66 16 12 O -0.52 -13.48 15.69 5.56 0.09 -13.39 16 13 C 0.18 3.84 5.48 -5.19 -0.03 3.81 16 14 N -0.53 -12.55 2.38 -167.02 -0.40 -12.94 16 15 C -0.25 -6.58 8.89 -15.06 -0.13 -6.72 16 16 H 0.08 2.16 6.28 -52.49 -0.33 1.83 16 17 C 0.00 0.08 4.83 -17.43 -0.08 -0.01 16 18 N -0.89 -23.97 8.85 55.49 0.49 -23.48 16 19 Si 0.91 21.09 29.63 -169.99 -5.04 16.05 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 C 0.13 2.63 6.60 -67.93 -0.45 2.18 16 24 C -0.20 -3.88 9.77 -26.69 -0.26 -4.14 16 25 C -0.22 -3.99 10.14 -26.69 -0.27 -4.26 16 26 N -0.46 -6.43 10.53 -8.05 -0.08 -6.52 16 27 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.43 6.69 8.00 -182.59 -1.46 5.23 16 34 H 0.42 7.45 8.00 -182.60 -1.46 5.99 16 35 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.10 2.37 6.62 -51.93 -0.34 2.03 16 37 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 38 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.10 2.07 6.44 -51.93 -0.33 1.74 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -33.82 372.90 -10.56 -44.38 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -7.71 Total: 11.82 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -1.51 Total: 7.85 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.40 Total: -61.29 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.18 Total: -23.50 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.04 Total: 16.05 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.49 Total: -0.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.82 -10.56 -44.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299588929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.459 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds