Wall clock time and date at job start Tue Mar 31 2020 20:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33636 * 122.74502 * 2 1 4 4 S 1.76194 * 107.92460 * 179.97438 * 3 2 1 5 5 C 1.70984 * 90.28056 * 0.27613 * 4 3 2 6 6 C 1.50706 * 124.91690 * 179.83904 * 5 4 3 7 7 C 1.50698 * 109.47177 * 269.99760 * 6 5 4 8 8 O 1.21285 * 119.99759 * 0.02562 * 7 6 5 9 9 N 1.34766 * 120.00090 * 179.97438 * 7 6 5 10 10 N 1.40103 * 120.00117 * 180.02562 * 9 7 6 11 11 C 1.34778 * 119.99804 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00288 * 0.02562 * 11 10 9 13 13 C 1.50708 * 119.99798 * 179.97438 * 11 10 9 14 14 N 1.46500 * 109.47058 * 180.02562 * 13 11 10 15 15 C 1.36931 * 119.99833 * 270.00210 * 14 13 11 16 16 H 1.08002 * 119.99798 * 192.63525 * 15 14 13 17 17 C 1.38808 * 120.00285 * 12.63067 * 15 14 13 18 18 N 1.31614 * 120.00021 * 25.30673 * 17 15 14 19 19 Si 1.86805 * 120.00114 * 205.31415 * 17 15 14 20 20 H 1.48499 * 109.47067 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47340 * 119.99793 * 19 17 15 22 22 H 1.48510 * 109.46888 * 239.99972 * 19 17 15 23 23 C 1.46498 * 119.99790 * 90.00125 * 14 13 11 24 24 C 1.52998 * 117.49681 * 194.11679 * 23 14 13 25 25 C 1.53005 * 117.49715 * 125.45617 * 23 14 13 26 26 N 1.29027 * 110.16772 * 359.83859 * 5 4 3 27 27 H 1.09008 * 109.47125 * 269.73069 * 1 2 3 28 28 H 1.08997 * 109.46836 * 149.73201 * 1 2 3 29 29 H 1.08994 * 109.47177 * 29.73201 * 1 2 3 30 30 H 1.08002 * 126.04087 * 0.04129 * 3 2 1 31 31 H 1.08998 * 109.46783 * 29.99601 * 6 5 4 32 32 H 1.09002 * 109.46844 * 149.99988 * 6 5 4 33 33 H 0.97003 * 119.99923 * 0.02562 * 9 7 6 34 34 H 0.96999 * 120.00109 * 359.97438 * 10 9 7 35 35 H 1.09002 * 109.47080 * 300.00397 * 13 11 10 36 36 H 1.08999 * 109.46589 * 59.99754 * 13 11 10 37 37 H 0.97005 * 120.00042 * 175.06152 * 18 17 15 38 38 H 1.08994 * 115.55285 * 339.78727 * 23 14 13 39 39 H 1.09000 * 117.50179 * 359.97438 * 24 23 14 40 40 H 1.08999 * 117.50125 * 145.02551 * 24 23 14 41 41 H 1.08997 * 117.49597 * 214.97465 * 25 23 14 42 42 H 1.08997 * 117.50086 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6733 0.0007 5 6 3.5040 -0.9818 -0.0073 6 6 4.4836 -2.1270 -0.0142 7 6 4.8085 -2.5015 -1.4373 8 8 4.2955 -1.8975 -2.3555 9 7 5.6699 -3.5067 -1.6897 10 7 5.9724 -3.8545 -3.0127 11 6 6.8335 -4.8602 -3.2650 12 8 7.3461 -5.4644 -2.3469 13 6 7.1584 -5.2347 -4.6882 14 7 8.1102 -6.3484 -4.6949 15 6 9.4565 -6.0983 -4.6950 16 1 10.1538 -6.8960 -4.9044 17 6 9.9250 -4.8197 -4.4259 18 7 9.1980 -3.9899 -3.7082 19 14 11.5873 -4.2766 -5.0828 20 1 12.2017 -5.3870 -5.8539 21 1 11.4086 -3.0980 -5.9682 22 1 12.4733 -3.9132 -3.9477 23 6 7.6216 -7.7294 -4.7016 24 6 8.6271 -8.8361 -4.3773 25 6 8.1271 -8.6523 -5.8124 26 7 2.2199 -1.1083 -0.0065 27 1 -0.3634 -0.0048 1.0277 28 1 -0.3633 -0.8876 -0.5180 29 1 -0.3633 0.8923 -0.5096 30 1 1.8391 2.1308 0.0006 31 1 5.3967 -1.8271 0.5001 32 1 4.0440 -2.9842 0.4958 33 1 6.0805 -3.9895 -0.9553 34 1 5.5616 -3.3720 -3.7471 35 1 6.2453 -5.5345 -5.2026 36 1 7.5979 -4.3774 -5.1981 37 1 9.5549 -3.1229 -3.4596 38 1 6.5952 -7.8667 -4.3616 39 1 9.6523 -8.5366 -4.1595 40 1 8.2622 -9.7015 -3.8243 41 1 7.4333 -9.3968 -6.2028 42 1 8.8228 -8.2317 -6.5385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299588929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:29 Heat of formation + Delta-G solvation = 46.619830 kcal Electronic energy + Delta-G solvation = -26354.458305 eV Core-core repulsion = 22464.208545 eV Total energy + Delta-G solvation = -3890.249760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32271 -40.64270 -39.73920 -38.40853 -36.04409 -35.18490 -34.23569 -32.71831 -32.13393 -30.39160 -28.50540 -28.17304 -25.71580 -24.37112 -22.97401 -22.26498 -21.88678 -21.44244 -20.68933 -18.94161 -18.75554 -18.28958 -18.05007 -17.50899 -16.81878 -16.59456 -16.25193 -16.10197 -15.78146 -15.74536 -15.14252 -15.04453 -14.66921 -14.46043 -14.22520 -14.14161 -13.61884 -13.38325 -13.27889 -13.17962 -13.02379 -12.71126 -12.46791 -12.29312 -12.23441 -12.14375 -12.03404 -11.78068 -11.70557 -11.32116 -10.99573 -10.69166 -10.53251 -10.39747 -10.34559 -9.65809 -9.06637 -8.72691 -7.91538 -5.17410 -0.32874 0.41023 0.78565 1.10633 1.43421 1.45241 1.49817 1.58060 1.81638 2.37616 2.53195 2.97427 3.13642 3.21090 3.42654 3.48461 3.72909 3.94317 4.22882 4.27513 4.28099 4.35012 4.41659 4.45989 4.49383 4.51334 4.78080 4.84314 4.85378 4.93739 4.97887 4.98782 5.16284 5.32689 5.36164 5.52658 5.71271 5.93394 5.98958 6.24709 6.76614 6.83927 7.09755 7.11246 7.77017 7.94860 8.21120 9.14940 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.002479 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.496948 B =11290.978669 C =12348.903364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.042 3.958 3 C -0.259 4.259 4 S 0.147 5.853 5 C 0.051 3.949 6 C -0.053 4.053 7 C 0.514 3.486 8 O -0.578 6.578 9 N -0.510 5.510 10 N -0.540 5.540 11 C 0.536 3.464 12 O -0.565 6.565 13 C 0.174 3.826 14 N -0.550 5.550 15 C -0.256 4.256 16 H 0.076 0.924 17 C -0.044 4.044 18 N -0.910 5.910 19 Si 0.962 3.038 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.303 1.303 23 C 0.102 3.898 24 C -0.203 4.203 25 C -0.193 4.193 26 N -0.490 5.490 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.206 0.794 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.431 0.569 34 H 0.422 0.578 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.247 0.753 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.621 7.564 7.416 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C -0.398 4.398 4 S 0.402 5.598 5 C -0.227 4.227 6 C -0.097 4.097 7 C 0.300 3.700 8 O -0.457 6.457 9 N -0.255 5.255 10 N -0.291 5.291 11 C 0.323 3.677 12 O -0.439 6.439 13 C 0.042 3.958 14 N -0.265 5.265 15 C -0.385 4.385 16 H 0.094 0.906 17 C -0.239 4.239 18 N -0.556 5.556 19 Si 0.792 3.208 20 H -0.198 1.198 21 H -0.215 1.215 22 H -0.231 1.231 23 C -0.006 4.006 24 C -0.242 4.242 25 C -0.233 4.233 26 N -0.206 5.206 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.223 0.777 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.273 0.727 34 H 0.262 0.738 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.795 7.727 7.404 17.459 hybrid contribution 0.485 0.483 -0.020 0.685 sum -13.310 8.210 7.384 17.294 Atomic orbital electron populations 1.20433 0.85212 1.03905 1.03857 1.20790 0.99716 0.86388 1.02077 1.27212 0.94573 1.05059 1.12979 1.83902 1.07914 1.01521 1.66462 1.26233 0.93760 0.98642 1.04103 1.20216 0.99306 0.97239 0.92928 1.20906 0.78138 0.78725 0.92279 1.90709 1.53647 1.53829 1.47499 1.44835 1.45263 1.35443 0.99988 1.45580 1.48946 1.37782 0.96785 1.22656 0.74014 0.76711 0.94365 1.90501 1.50949 1.55145 1.47333 1.20587 0.92881 0.92345 0.89972 1.43720 1.02237 0.99295 1.81249 1.19358 0.83596 0.94384 1.41196 0.90634 1.25358 1.01119 0.97951 0.99511 1.69902 1.38385 1.09693 1.37632 0.85279 0.80123 0.77884 0.77483 1.19797 1.21499 1.23056 1.21255 0.95917 0.81784 1.01661 1.23144 0.99979 1.01409 0.99675 1.23381 1.04526 1.03959 0.91414 1.66060 1.05036 1.33250 1.16222 0.89305 0.91585 0.88726 0.77740 0.83270 0.83409 0.72692 0.73752 0.89720 0.89722 0.94372 0.87660 0.91072 0.88120 0.87061 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.31 71.24 0.73 -0.39 16 2 C 0.04 0.93 6.74 41.52 0.28 1.21 16 3 C -0.26 -4.84 11.13 66.78 0.74 -4.10 16 4 S 0.15 3.07 23.18 -56.49 -1.31 1.76 16 5 C 0.05 1.25 5.88 88.52 0.52 1.77 16 6 C -0.05 -1.12 6.28 29.10 0.18 -0.94 16 7 C 0.51 15.51 7.94 87.66 0.70 16.21 16 8 O -0.58 -21.52 15.87 -3.05 -0.05 -21.57 16 9 N -0.51 -16.74 6.26 -173.54 -1.09 -17.83 16 10 N -0.54 -20.46 6.26 -173.53 -1.09 -21.55 16 11 C 0.54 23.81 5.91 87.66 0.52 24.33 16 12 O -0.56 -29.37 15.69 -3.02 -0.05 -29.42 16 13 C 0.17 7.56 5.48 85.64 0.47 8.03 16 14 N -0.55 -25.88 2.38 -682.34 -1.62 -27.50 16 15 C -0.26 -13.38 8.89 84.03 0.75 -12.63 16 16 H 0.08 3.98 6.28 -2.91 -0.02 3.96 16 17 C -0.04 -2.31 4.83 84.86 0.41 -1.90 16 18 N -0.91 -49.69 8.85 21.65 0.19 -49.50 16 19 Si 0.96 44.13 29.63 68.60 2.03 46.16 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 C 0.10 4.07 6.60 44.99 0.30 4.37 16 24 C -0.20 -7.63 9.77 30.62 0.30 -7.33 16 25 C -0.19 -6.55 10.14 30.62 0.31 -6.24 16 26 N -0.49 -13.17 10.53 -179.39 -1.89 -15.06 16 27 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 0.99 8.12 -2.39 -0.02 0.97 16 30 H 0.21 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.15 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.43 13.39 8.00 -213.31 -1.71 11.68 16 34 H 0.42 15.14 8.00 -213.32 -1.71 13.43 16 35 H 0.08 3.00 8.07 -2.39 -0.02 2.98 16 36 H 0.08 3.97 6.62 -2.39 -0.02 3.95 16 37 H 0.25 13.49 8.32 -92.70 -0.77 12.72 16 38 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 39 H 0.07 3.05 6.44 -2.39 -0.02 3.03 16 40 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -73.84 372.90 -0.99 -74.83 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -2.33 Total: 37.29 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 6.21 Total: 22.39 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.49 Total: -131.43 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.10 Total: -50.99 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.76 kcal Total: -73.84 -0.99 -74.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299588929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.448 kcal (2) G-P(sol) polarization free energy of solvation -73.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds