Wall clock time and date at job start Tue Mar 31 2020 20:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36027 * 120.33686 * 2 1 4 4 C 1.40466 * 119.69338 * 179.97438 * 3 2 1 5 5 C 1.34946 * 120.30310 * 359.97438 * 4 3 2 6 6 N 1.36492 * 120.60813 * 359.97438 * 5 4 3 7 7 C 1.36839 * 132.56725 * 180.02562 * 6 5 4 8 8 C 1.35110 * 107.17263 * 179.35207 * 7 6 5 9 9 C 1.50708 * 125.68352 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.46744 * 95.58340 * 9 8 7 11 11 S 1.65597 * 119.99953 * 164.99798 * 10 9 8 12 12 O 1.42100 * 106.40202 * 178.53770 * 11 10 9 13 13 O 1.42099 * 106.40253 * 311.46351 * 11 10 9 14 14 N 1.65602 * 107.21702 * 65.00310 * 11 10 9 15 15 C 1.46500 * 120.00299 * 270.00282 * 14 11 10 16 16 C 1.46509 * 120.00080 * 89.99617 * 14 11 10 17 17 C 1.50703 * 109.46632 * 94.99961 * 16 14 11 18 18 H 1.07995 * 119.99837 * 0.02562 * 17 16 14 19 19 C 1.37879 * 119.99426 * 179.97438 * 17 16 14 20 20 N 1.31512 * 120.00408 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47075 * 89.99973 * 21 19 17 23 23 H 1.48501 * 109.47109 * 210.00069 * 21 19 17 24 24 H 1.48508 * 109.47006 * 329.99998 * 21 19 17 25 25 N 1.33509 * 108.62906 * 0.56131 * 8 7 6 26 26 C 1.32563 * 109.15839 * 359.49816 * 25 8 7 27 27 H 1.09002 * 109.47152 * 90.00165 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00265 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00246 * 1 2 3 30 30 H 1.08006 * 120.15121 * 359.95362 * 3 2 1 31 31 H 1.08003 * 119.84997 * 179.97438 * 4 3 2 32 32 H 1.08004 * 119.70084 * 180.02562 * 5 4 3 33 33 H 1.08000 * 126.41210 * 359.97438 * 7 6 5 34 34 H 1.08999 * 109.47345 * 215.58593 * 9 8 7 35 35 H 1.09001 * 109.47241 * 335.59003 * 9 8 7 36 36 H 0.97001 * 120.00063 * 345.00332 * 10 9 8 37 37 H 1.08998 * 109.47717 * 89.99385 * 15 14 11 38 38 H 1.09001 * 109.47176 * 209.99958 * 15 14 11 39 39 H 1.09010 * 109.46506 * 329.99902 * 15 14 11 40 40 H 1.08996 * 109.47266 * 214.99963 * 16 14 11 41 41 H 1.08999 * 109.47124 * 335.00277 * 16 14 11 42 42 H 0.96999 * 119.99888 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1740 0.0000 4 6 3.5987 1.1582 0.0005 5 6 4.2664 -0.0144 0.0016 6 7 3.5895 -1.1996 0.0027 7 6 4.0055 -2.5033 0.0043 8 6 2.8971 -3.2757 0.0193 9 6 2.8759 -4.7826 0.0269 10 7 2.7485 -5.2622 1.4054 11 16 2.3286 -6.8369 1.6988 12 8 2.3232 -6.9943 3.1110 13 8 1.1983 -7.1096 0.8819 14 7 3.5587 -7.7869 1.1272 15 6 3.5320 -8.2656 -0.2572 16 6 4.6739 -8.1485 2.0058 17 6 4.4065 -9.4944 2.6288 18 1 3.4971 -10.0272 2.3934 19 6 5.3233 -10.0459 3.4984 20 7 6.4310 -9.3972 3.7846 21 14 4.9922 -11.7145 4.2701 22 1 5.5481 -12.7816 3.3997 23 1 5.6377 -11.7790 5.6059 24 1 3.5274 -11.9095 4.4182 25 7 1.8238 -2.4817 0.0144 26 6 2.2188 -1.2163 0.0076 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.6620 2.1139 -0.0008 31 1 4.1467 2.0889 0.0001 32 1 5.3465 -0.0152 0.0024 33 1 5.0285 -2.8497 0.0047 34 1 2.0291 -5.1371 -0.5608 35 1 3.8021 -5.1613 -0.4053 36 1 2.9101 -4.6572 2.1462 37 1 4.0346 -7.5439 -0.9011 38 1 4.0435 -9.2261 -0.3194 39 1 2.4978 -8.3829 -0.5810 40 1 5.5947 -8.1938 1.4244 41 1 4.7762 -7.3988 2.7904 42 1 7.0758 -9.7851 4.3967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355721399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:05 Heat of formation + Delta-G solvation = 15.913292 kcal Electronic energy + Delta-G solvation = -26692.349007 eV Core-core repulsion = 22800.767712 eV Total energy + Delta-G solvation = -3891.581295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.05841 -38.05131 -36.53913 -35.46451 -35.13550 -35.07934 -34.56447 -32.40310 -31.14456 -29.62853 -27.74132 -27.40747 -26.04738 -25.00324 -23.06990 -22.34279 -22.24075 -20.81180 -18.88944 -17.88107 -17.24288 -17.21931 -16.63634 -16.43452 -16.25286 -15.85948 -15.52684 -14.86994 -14.53011 -14.47944 -14.21040 -13.65625 -13.57072 -13.29192 -13.24934 -13.06488 -12.80252 -12.26473 -12.14595 -12.11159 -12.03768 -11.96347 -11.55245 -11.41831 -11.29334 -11.12322 -11.02830 -10.88400 -10.66128 -10.48219 -10.23291 -10.00001 -9.73520 -9.29408 -8.98099 -8.42225 -8.05500 -8.02213 -6.04226 -4.07719 0.41862 0.98765 1.29123 2.32760 2.56261 3.20454 3.33519 3.39831 3.46334 3.69639 3.87152 4.08454 4.23274 4.37576 4.46842 4.47803 4.62537 4.92224 5.02034 5.04176 5.15591 5.24325 5.31578 5.36697 5.41705 5.53466 5.63264 5.66414 5.71099 5.78709 5.97347 5.99804 6.05393 6.22011 6.35122 6.39353 6.60154 6.81229 7.14875 7.29843 7.45940 7.65582 7.68282 7.93861 8.23483 8.94893 9.57378 11.04424 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022402 B = 0.002577 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.563304 B =10861.128225 C =11383.954329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.040 4.040 3 C -0.116 4.116 4 C -0.138 4.138 5 C 0.049 3.951 6 N -0.362 5.362 7 C -0.076 4.076 8 C 0.054 3.946 9 C 0.204 3.796 10 N -1.128 6.128 11 S 2.784 3.216 12 O -0.963 6.963 13 O -0.995 6.995 14 N -0.996 5.996 15 C 0.093 3.907 16 C 0.257 3.743 17 C -0.527 4.527 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 N -0.471 5.471 26 C 0.221 3.779 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.150 0.850 32 H 0.163 0.837 33 H 0.188 0.812 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.413 0.587 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 23.151 -11.407 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.042 4.042 3 C -0.139 4.139 4 C -0.159 4.159 5 C -0.073 4.073 6 N -0.033 5.033 7 C -0.209 4.209 8 C -0.080 4.080 9 C 0.077 3.923 10 N -0.887 5.887 11 S 2.791 3.209 12 O -0.947 6.947 13 O -0.979 6.979 14 N -0.839 5.839 15 C -0.054 4.054 16 C 0.135 3.865 17 C -0.567 4.567 18 H 0.079 0.921 19 C -0.141 4.141 20 N -0.536 5.536 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 N -0.191 5.191 26 C -0.023 4.023 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.180 0.820 33 H 0.205 0.795 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.246 0.754 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.820 22.364 -11.050 25.406 hybrid contribution 1.521 -0.166 0.641 1.658 sum -3.299 22.198 -10.409 24.738 Atomic orbital electron populations 1.20689 0.88872 1.03714 1.03064 1.19057 0.97032 0.88349 0.99777 1.20918 0.93730 0.97828 1.01455 1.20773 0.94787 0.97133 1.03218 1.21611 0.98711 0.83243 1.03719 1.42811 1.08801 1.06077 1.45644 1.22580 1.01446 0.80360 1.16521 1.20777 0.88118 0.96036 1.03025 1.19404 1.02839 0.86299 0.83754 1.56254 1.89044 1.31012 1.12375 1.01904 0.73402 0.72312 0.73291 1.93643 1.86659 1.84735 1.29628 1.93526 1.48967 1.84301 1.71068 1.57626 1.41930 1.64039 1.20338 1.21386 1.01872 1.00519 0.81575 1.19046 0.83357 0.96208 0.87859 1.21514 1.05342 1.03500 1.26341 0.92135 1.24931 0.94954 0.98006 0.96183 1.69917 1.09541 1.38386 1.35789 0.86514 0.78689 0.83752 0.78611 1.20632 1.21095 1.19681 1.70655 1.29471 0.97679 1.21342 1.20799 0.80231 0.94361 1.06932 0.90482 0.90936 0.90116 0.84149 0.83251 0.81973 0.79500 0.88935 0.90142 0.75440 0.94307 0.90381 0.91474 0.94710 0.94432 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.03 36.01 0.36 -0.48 16 2 C -0.04 -0.38 5.90 -104.40 -0.62 -1.00 16 3 C -0.12 -0.80 9.72 -39.54 -0.38 -1.18 16 4 C -0.14 -0.83 9.98 -39.91 -0.40 -1.22 16 5 C 0.05 0.36 10.95 -16.65 -0.18 0.18 16 6 N -0.36 -3.92 2.95 -62.66 -0.18 -4.11 16 7 C -0.08 -0.85 11.66 -16.43 -0.19 -1.05 16 8 C 0.05 0.73 6.45 -82.97 -0.54 0.20 16 9 C 0.20 2.78 6.78 -5.19 -0.04 2.75 16 10 N -1.13 -18.02 6.05 -11.65 -0.07 -18.09 16 11 S 2.78 56.71 6.10 -107.50 -0.66 56.05 16 12 O -0.96 -23.69 17.11 -57.17 -0.98 -24.66 16 13 O -1.00 -21.43 16.21 -57.17 -0.93 -22.36 16 14 N -1.00 -20.60 3.23 -123.04 -0.40 -20.99 16 15 C 0.09 1.57 10.68 59.85 0.64 2.21 16 16 C 0.26 6.43 5.08 -5.19 -0.03 6.40 16 17 C -0.53 -14.91 9.38 -34.44 -0.32 -15.23 16 18 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.90 -26.24 13.29 55.43 0.74 -25.51 16 21 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 N -0.47 -7.00 11.31 -9.00 -0.10 -7.10 16 26 C 0.22 2.79 7.52 -156.04 -1.17 1.61 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.08 0.79 8.10 -51.93 -0.42 0.36 16 30 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 31 H 0.15 0.41 8.06 -52.48 -0.42 -0.02 16 32 H 0.16 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.19 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.09 1.30 7.75 -51.93 -0.40 0.90 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.41 6.22 8.64 -34.47 -0.30 5.92 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 39 H 0.07 1.08 7.02 -51.92 -0.36 0.72 16 40 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 41 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -37.47 372.84 -10.59 -48.06 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.65 Total: 1.25 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.96 Total: -5.17 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -0.02 Total: -75.80 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.90 Total: -47.02 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 56.71 SS G_CDS: -0.66 Total: 56.05 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.47 -10.59 -48.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355721399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.974 kcal (2) G-P(sol) polarization free energy of solvation -37.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds