Wall clock time and date at job start Tue Mar 31 2020 21:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47098 * 2 1 4 4 C 1.52996 * 109.47149 * 240.00253 * 2 1 3 5 5 C 1.50700 * 109.47249 * 119.99817 * 2 1 3 6 6 C 1.38363 * 119.85959 * 0.02562 * 5 2 1 7 7 C 1.37934 * 120.15836 * 180.27877 * 6 5 2 8 8 C 1.39607 * 119.87916 * 359.49076 * 7 6 5 9 9 C 1.47854 * 120.13409 * 180.23699 * 8 7 6 10 10 O 1.21548 * 119.99622 * 180.27016 * 9 8 7 11 11 N 1.34773 * 120.00225 * 0.26995 * 9 8 7 12 12 C 1.46502 * 120.00062 * 180.02562 * 11 9 8 13 13 C 1.50690 * 109.47229 * 179.97438 * 12 11 9 14 14 O 1.21291 * 120.00459 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99922 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99840 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00333 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99845 * 180.02562 * 16 15 13 19 19 N 1.31403 * 120.00019 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99786 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47361 * 59.99932 * 20 18 16 22 22 H 1.48504 * 109.46764 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46997 * 299.99933 * 20 18 16 24 24 C 1.39534 * 119.72330 * 0.50622 * 8 7 6 25 25 C 1.38099 * 119.83785 * 359.74568 * 24 8 7 26 26 Cl 1.73603 * 119.93844 * 179.97438 * 25 24 8 27 27 H 1.08999 * 109.47170 * 299.99709 * 1 2 3 28 28 H 1.09000 * 109.46993 * 60.00374 * 1 2 3 29 29 H 1.08999 * 109.46606 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47273 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46662 * 300.00106 * 3 2 1 32 32 H 1.08996 * 109.47073 * 59.99366 * 3 2 1 33 33 H 1.09007 * 109.47130 * 299.99200 * 4 2 1 34 34 H 1.09000 * 109.47685 * 59.99797 * 4 2 1 35 35 H 1.09007 * 109.47117 * 180.02562 * 4 2 1 36 36 H 1.08002 * 119.91737 * 359.97438 * 6 5 2 37 37 H 1.08002 * 120.05827 * 179.74111 * 7 6 5 38 38 H 0.96996 * 119.99767 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.46870 * 300.00017 * 12 11 9 40 40 H 1.09006 * 109.46935 * 59.99484 * 12 11 9 41 41 H 0.96996 * 120.00050 * 0.02562 * 15 13 12 42 42 H 0.97001 * 120.00550 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.07808 * 179.77355 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.1307 -1.2355 2.1391 7 6 1.5837 -1.8819 3.2703 8 6 2.9555 -2.0153 3.4928 9 6 3.4472 -2.7117 4.7008 10 8 4.6421 -2.8221 4.8944 11 7 2.5707 -3.2240 5.5871 12 6 3.0580 -3.9135 6.7844 13 6 1.8853 -4.3868 7.6038 14 8 0.7537 -4.1693 7.2253 15 7 2.0939 -5.0520 8.7573 16 6 1.0269 -5.4831 9.5025 17 1 0.0193 -5.2894 9.1654 18 6 1.2420 -6.1685 10.6920 19 7 2.4679 -6.4029 11.1028 20 14 -0.2119 -6.7565 11.7070 21 1 -1.0346 -7.6913 10.8981 22 1 0.2822 -7.4547 12.9210 23 1 -1.0388 -5.5904 12.1092 24 6 3.8604 -1.4838 2.5732 25 6 3.3941 -0.8344 1.4471 26 17 4.5177 -0.1716 0.3017 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1393 35 1 3.1301 -0.7216 -1.2490 36 1 0.0696 -1.1348 1.9646 37 1 0.8785 -2.2876 3.9806 38 1 1.6172 -3.1361 5.4323 39 1 3.6646 -4.7696 6.4890 40 1 3.6624 -3.2275 7.3780 41 1 2.9988 -5.2257 9.0602 42 1 2.6181 -6.8809 11.9334 43 1 4.9228 -1.5806 2.7414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356491277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:32 Heat of formation + Delta-G solvation = -64.567723 kcal Electronic energy + Delta-G solvation = -25943.712714 eV Core-core repulsion = 22014.305042 eV Total energy + Delta-G solvation = -3929.407671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.63543 -39.37723 -38.16859 -36.78654 -36.43631 -34.58031 -33.78907 -31.45773 -31.20115 -30.70960 -27.86335 -27.60887 -27.55782 -24.88419 -23.78873 -22.61381 -20.71555 -19.71916 -19.63424 -18.44432 -17.90899 -16.37897 -16.27219 -15.57522 -15.44897 -15.38406 -15.12767 -14.63527 -14.57802 -14.25553 -14.19074 -14.07550 -13.94441 -13.75335 -13.48450 -13.07908 -12.39250 -12.31921 -12.27850 -12.25409 -12.08549 -11.95299 -11.66823 -11.59191 -11.32066 -11.16481 -11.12703 -11.12116 -10.53458 -10.35137 -10.24975 -9.91892 -9.66471 -9.22094 -9.02565 -8.81610 -8.68986 -8.14293 -6.54829 -3.97133 0.52459 0.92050 1.78257 2.70608 3.11175 3.17957 3.20187 3.27072 3.58869 3.70249 4.07501 4.11873 4.32767 4.62665 4.65011 4.71949 4.78339 4.86964 4.89636 5.06281 5.13496 5.26485 5.30804 5.33530 5.46869 5.52235 5.57160 5.59908 5.61966 5.74289 5.84101 5.88765 5.89876 5.96861 6.00611 6.01925 6.03443 6.14218 6.38786 6.56127 7.42461 7.67520 7.87501 8.29110 8.41025 9.00568 9.34802 9.82322 10.61827 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025036 B = 0.002053 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.100229 B =13632.463376 C =14554.205064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.030 4.030 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.039 4.039 6 C -0.118 4.118 7 C -0.074 4.074 8 C -0.121 4.121 9 C 0.556 3.444 10 O -0.542 6.542 11 N -0.700 5.700 12 C 0.108 3.892 13 C 0.427 3.573 14 O -0.599 6.599 15 N -0.547 5.547 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.049 4.049 25 C -0.044 4.044 26 Cl -0.055 7.055 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.411 0.589 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 12.818 -22.218 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 C -0.213 4.213 4 C -0.213 4.213 5 C -0.040 4.040 6 C -0.136 4.136 7 C -0.093 4.093 8 C -0.124 4.124 9 C 0.342 3.658 10 O -0.421 6.421 11 N -0.354 5.354 12 C -0.019 4.019 13 C 0.212 3.788 14 O -0.486 6.486 15 N -0.181 5.181 16 C -0.436 4.436 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.533 5.533 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.068 4.068 25 C -0.070 4.070 26 Cl -0.026 7.026 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.250 0.750 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.230 0.770 42 H 0.085 0.915 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.409 12.803 -22.191 25.622 hybrid contribution -0.468 -0.415 0.721 0.954 sum -0.059 12.388 -21.470 24.787 Atomic orbital electron populations 1.21994 0.93668 1.02271 1.02317 1.19557 0.96063 0.95414 0.92012 1.22177 1.03242 0.93875 1.01977 1.22175 1.03231 1.00084 0.95772 1.19926 0.91014 0.96659 0.96399 1.21128 1.00322 0.98568 0.93543 1.21589 0.94599 0.95997 0.97126 1.19873 0.93659 1.02537 0.96353 1.18070 0.86059 0.78956 0.82689 1.90771 1.15461 1.59213 1.76653 1.45607 1.11063 1.56456 1.22233 1.21002 0.96469 0.97898 0.86543 1.19695 0.89565 0.85289 0.84209 1.90488 1.23726 1.62379 1.71968 1.41787 1.10155 1.47754 1.18444 1.19682 0.88848 1.33026 1.02029 0.87687 1.25338 0.97902 0.96958 0.97476 1.69600 1.19794 1.40553 1.23401 0.85863 0.80409 0.79004 0.78643 1.19744 1.20830 1.19751 1.21105 1.01211 0.93731 0.90757 1.20561 0.90008 1.03001 0.93466 1.98315 1.61274 1.83908 1.59113 0.92006 0.92032 0.92002 0.90798 0.92168 0.92516 0.92520 0.92161 0.90809 0.83898 0.84320 0.75008 0.89545 0.89551 0.76985 0.91473 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.13 37.16 0.26 -0.65 16 2 C -0.03 -0.23 0.75 -155.66 -0.12 -0.35 16 3 C -0.16 -1.14 8.22 37.16 0.31 -0.84 16 4 C -0.16 -1.14 8.22 37.16 0.31 -0.84 16 5 C -0.04 -0.37 4.77 -104.50 -0.50 -0.87 16 6 C -0.12 -1.09 8.96 -39.65 -0.36 -1.45 16 7 C -0.07 -0.81 9.54 -39.18 -0.37 -1.18 16 8 C -0.12 -1.57 5.87 -104.97 -0.62 -2.19 16 9 C 0.56 8.89 7.77 -12.33 -0.10 8.79 16 10 O -0.54 -10.13 16.35 5.32 0.09 -10.04 16 11 N -0.70 -11.48 5.48 -62.43 -0.34 -11.82 16 12 C 0.11 1.96 6.15 -5.20 -0.03 1.92 16 13 C 0.43 9.57 7.85 -10.99 -0.09 9.48 16 14 O -0.60 -14.90 15.24 5.55 0.08 -14.81 16 15 N -0.55 -13.33 5.29 -10.96 -0.06 -13.39 16 16 C -0.31 -8.20 9.68 -14.93 -0.14 -8.35 16 17 H 0.11 2.91 7.16 -52.49 -0.38 2.54 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 19 N -0.89 -23.58 13.05 55.50 0.72 -22.86 16 20 Si 0.93 20.27 29.55 -169.99 -5.02 15.25 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.05 -0.59 9.37 -39.15 -0.37 -0.96 16 25 C -0.04 -0.46 6.02 -39.56 -0.24 -0.70 16 26 Cl -0.06 -0.51 22.46 -51.86 -1.16 -1.68 16 27 H 0.06 0.37 7.51 -51.93 -0.39 -0.02 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.37 7.50 -51.93 -0.39 -0.02 16 30 H 0.07 0.58 4.92 -51.93 -0.26 0.33 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.58 4.93 -51.93 -0.26 0.33 16 36 H 0.14 1.02 5.87 -52.49 -0.31 0.71 16 37 H 0.14 1.40 6.40 -52.49 -0.34 1.06 16 38 H 0.41 6.47 5.47 -40.82 -0.22 6.24 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.40 9.29 7.90 -40.82 -0.32 8.97 16 42 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.15 1.82 7.65 -52.48 -0.40 1.41 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -30.21 365.15 -7.69 -37.90 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -5.35 Total: 13.52 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -2.14 Total: 2.42 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.32 Total: -48.07 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.17 Total: -24.85 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.16 Total: -1.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.21 -7.69 -37.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356491277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.668 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds