Wall clock time and date at job start Tue Mar 31 2020 20:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33644 * 122.74756 * 2 1 4 4 S 1.76203 * 107.92269 * 180.02562 * 3 2 1 5 5 C 1.70982 * 90.28261 * 359.97438 * 4 3 2 6 6 C 1.50699 * 124.91638 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47247 * 165.02536 * 6 5 4 8 8 N 1.46506 * 109.46928 * 45.02468 * 6 5 4 9 9 C 1.34779 * 119.99461 * 154.99970 * 8 6 5 10 10 O 1.21586 * 120.00280 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99580 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00190 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47384 * 179.97438 * 12 11 9 14 14 O 1.21290 * 120.00224 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00007 * 179.97438 * 13 12 11 16 16 C 1.37099 * 120.00001 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00123 * 359.97438 * 16 15 13 18 18 C 1.38956 * 119.99970 * 180.02562 * 16 15 13 19 19 N 1.31405 * 119.99909 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99749 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47358 * 89.99963 * 20 18 16 22 22 H 1.48502 * 109.47046 * 209.99747 * 20 18 16 23 23 H 1.48499 * 109.47419 * 329.99448 * 20 18 16 24 24 C 1.53005 * 109.47155 * 285.02923 * 6 5 4 25 25 C 1.53005 * 117.49574 * 248.62173 * 24 6 5 26 26 C 1.52995 * 117.49561 * 179.97438 * 24 6 5 27 27 N 1.29023 * 110.16609 * 0.24551 * 5 4 3 28 28 H 1.08991 * 109.47575 * 89.97155 * 1 2 3 29 29 H 1.09001 * 109.47108 * 209.97393 * 1 2 3 30 30 H 1.09008 * 109.47200 * 329.97140 * 1 2 3 31 31 H 1.07996 * 126.03740 * 359.97105 * 3 2 1 32 32 H 0.96995 * 119.99814 * 334.99917 * 8 6 5 33 33 H 0.97000 * 120.00210 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47360 * 300.00013 * 12 11 9 35 35 H 1.09003 * 109.46856 * 59.99681 * 12 11 9 36 36 H 0.96997 * 120.00185 * 0.02562 * 15 13 12 37 37 H 0.96998 * 120.00041 * 179.97438 * 19 18 16 38 38 H 1.08992 * 115.55061 * 34.32551 * 24 6 5 39 39 H 1.08998 * 117.49721 * 359.97438 * 25 24 6 40 40 H 1.09002 * 117.49465 * 145.01720 * 25 24 6 41 41 H 1.09004 * 117.49815 * 214.97206 * 26 24 6 42 42 H 1.08997 * 117.50322 * 0.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6732 -0.0007 5 6 3.5039 -0.9819 -0.0002 6 6 4.4835 -2.1271 -0.0010 7 1 3.9655 -3.0485 0.2650 8 7 5.5437 -1.8635 0.9751 9 6 6.2251 -2.8891 1.5232 10 8 5.9603 -4.0329 1.2072 11 7 7.2001 -2.6466 2.4215 12 6 7.9412 -3.7613 3.0169 13 6 8.9676 -3.2242 3.9808 14 8 9.0697 -2.0281 4.1538 15 7 9.7715 -4.0731 4.6514 16 6 10.7049 -3.5846 5.5287 17 1 10.7964 -2.5195 5.6821 18 6 11.5340 -4.4598 6.2197 19 7 11.4231 -5.7557 6.0326 20 14 12.8063 -3.7940 7.4144 21 1 12.2057 -3.6870 8.7683 22 1 13.9709 -4.7142 7.4609 23 1 13.2538 -2.4517 6.9639 24 6 5.0980 -2.2716 -1.3948 25 6 4.7246 -3.5140 -2.2060 26 6 6.1250 -3.3865 -1.6018 27 7 2.2199 -1.1083 -0.0048 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5143 31 1 1.8391 2.1308 -0.0004 32 1 5.7552 -0.9510 1.2269 33 1 7.4116 -1.7341 2.6734 34 1 7.2496 -4.4146 3.5489 35 1 8.4422 -4.3258 2.2305 36 1 9.6896 -5.0297 4.5134 37 1 12.0021 -6.3666 6.5146 38 1 5.2493 -1.3405 -1.9407 39 1 4.0416 -4.2285 -1.7466 40 1 4.6302 -3.4002 -3.2860 41 1 6.9515 -3.1891 -2.2845 42 1 6.3627 -4.0173 -0.7452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358277999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:41 Heat of formation + Delta-G solvation = -16.723119 kcal Electronic energy + Delta-G solvation = -25955.965183 eV Core-core repulsion = 22062.968667 eV Total energy + Delta-G solvation = -3892.996516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.61716 -40.85158 -40.09980 -38.43971 -36.21765 -35.57365 -35.21945 -33.37335 -33.04363 -29.99395 -28.66676 -28.20755 -26.26444 -24.26217 -23.24009 -22.41928 -21.76428 -21.35474 -20.67120 -20.06819 -19.65378 -18.75162 -17.64438 -17.41238 -17.17147 -16.76789 -16.41571 -16.22222 -15.99503 -15.77940 -15.61659 -15.15594 -15.11936 -14.89635 -14.37188 -13.94189 -13.65420 -13.54520 -13.52812 -13.49297 -13.32580 -12.97553 -12.89550 -12.44316 -12.37067 -12.28505 -12.12034 -11.55737 -11.52872 -11.33832 -11.20897 -10.72080 -10.54106 -10.50835 -10.35550 -10.09892 -9.96884 -9.72934 -8.49745 -5.99698 -0.40999 0.27387 0.69200 1.33931 1.37367 1.44273 1.56556 1.76058 1.90996 2.04673 2.28772 2.74723 2.82173 3.13023 3.17644 3.33781 3.73327 3.78597 4.04463 4.08367 4.19128 4.23386 4.24905 4.35628 4.45173 4.48431 4.52779 4.77796 4.80224 4.81884 4.91368 4.98795 5.15771 5.20478 5.27187 5.33632 5.39476 5.45113 5.79710 5.93831 6.49545 6.68990 6.91450 7.04991 7.41398 7.48670 7.96196 8.67122 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.002173 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.589830 B =12881.899405 C =13687.093371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.044 3.956 3 C -0.251 4.251 4 S 0.164 5.836 5 C 0.024 3.976 6 C 0.278 3.722 7 H 0.093 0.907 8 N -0.729 5.729 9 C 0.715 3.285 10 O -0.612 6.612 11 N -0.721 5.721 12 C 0.143 3.857 13 C 0.434 3.566 14 O -0.624 6.624 15 N -0.560 5.560 16 C -0.336 4.336 17 H 0.086 0.914 18 C -0.012 4.012 19 N -0.916 5.916 20 Si 0.997 3.003 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.170 4.170 25 C -0.156 4.156 26 C -0.182 4.182 27 N -0.484 5.484 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.210 0.790 32 H 0.405 0.595 33 H 0.410 0.590 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.399 0.601 37 H 0.279 0.721 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 12.133 -15.926 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.390 4.390 4 S 0.419 5.581 5 C -0.254 4.254 6 C 0.169 3.831 7 H 0.111 0.889 8 N -0.385 5.385 9 C 0.415 3.585 10 O -0.492 6.492 11 N -0.378 5.378 12 C 0.014 3.986 13 C 0.221 3.779 14 O -0.512 6.512 15 N -0.195 5.195 16 C -0.465 4.465 17 H 0.104 0.896 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.820 3.180 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.190 4.190 25 C -0.193 4.193 26 C -0.219 4.219 27 N -0.200 5.200 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.227 0.773 32 H 0.241 0.759 33 H 0.247 0.753 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.107 0.893 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.648 11.724 -15.978 26.537 hybrid contribution -0.034 0.270 0.884 0.925 sum -17.682 11.993 -15.094 26.160 Atomic orbital electron populations 1.20456 0.85112 1.04147 1.03890 1.20808 0.99706 0.86149 1.02141 1.27331 0.94531 1.05191 1.11920 1.83876 1.07737 1.00122 1.66373 1.26718 0.94041 0.98992 1.05660 1.18412 0.83543 0.93763 0.87339 0.88872 1.44967 1.38523 1.08658 1.46365 1.15678 0.79292 0.84693 0.78872 1.90846 1.70856 1.21014 1.66506 1.44662 1.37212 1.11016 1.44948 1.20607 0.93228 0.88793 0.95945 1.20423 0.85305 0.86835 0.85350 1.90470 1.73926 1.16672 1.70109 1.41834 1.31245 1.09230 1.37214 1.19724 1.13017 0.94208 1.19544 0.89562 1.26126 1.00180 0.95225 0.99705 1.69677 1.40429 1.02435 1.43051 0.84872 0.77192 0.78098 0.77857 1.19626 1.19715 1.19417 1.22594 1.05572 0.95432 0.95443 1.22991 0.98214 0.98215 0.99909 1.23254 0.93197 1.01392 1.04063 1.66031 1.04756 1.33533 1.15700 0.89546 0.91400 0.88404 0.77330 0.75912 0.75257 0.88964 0.88645 0.76681 0.91105 0.86273 0.89276 0.86759 0.87999 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.31 71.23 0.73 -0.14 16 2 C 0.04 0.77 6.74 41.52 0.28 1.05 16 3 C -0.25 -3.39 11.13 66.78 0.74 -2.65 16 4 S 0.16 2.51 22.28 -56.49 -1.26 1.26 16 5 C 0.02 0.51 6.28 88.52 0.56 1.06 16 6 C 0.28 6.57 2.78 44.25 0.12 6.69 16 7 H 0.09 2.69 7.33 -2.39 -0.02 2.68 16 8 N -0.73 -17.73 5.05 -461.39 -2.33 -20.06 16 9 C 0.71 22.14 7.89 179.05 1.41 23.55 16 10 O -0.61 -22.15 13.37 -3.99 -0.05 -22.20 16 11 N -0.72 -23.29 5.53 -482.30 -2.67 -25.96 16 12 C 0.14 5.12 6.15 85.63 0.53 5.65 16 13 C 0.43 19.73 7.85 87.66 0.69 20.42 16 14 O -0.62 -31.73 15.24 -3.06 -0.05 -31.78 16 15 N -0.56 -27.85 5.29 -306.99 -1.62 -29.48 16 16 C -0.34 -18.36 9.68 84.04 0.81 -17.54 16 17 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 18 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 19 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 20 Si 1.00 41.61 29.55 68.60 2.03 43.63 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 C -0.17 -3.55 5.34 -10.79 -0.06 -3.61 16 25 C -0.16 -3.14 10.18 30.61 0.31 -2.83 16 26 C -0.18 -4.25 9.73 30.61 0.30 -3.95 16 27 N -0.48 -11.20 10.53 -179.40 -1.89 -13.09 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.64 8.12 -2.38 -0.02 0.62 16 31 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.40 8.20 7.80 -92.71 -0.72 7.47 16 33 H 0.41 12.96 7.45 -92.71 -0.69 12.27 16 34 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 37 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 38 H 0.12 2.11 8.11 -2.39 -0.02 2.09 16 39 H 0.09 1.96 8.05 -2.39 -0.02 1.94 16 40 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.10 2.95 5.01 -2.39 -0.01 2.94 16 Total: -1.00 -67.90 372.93 -1.70 -69.60 By element: Atomic # 1 Polarization: 49.79 SS G_CDS: -1.04 Total: 48.74 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 6.90 Total: 27.56 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -8.23 Total: -136.82 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -0.10 Total: -53.98 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.26 Total: 1.26 kcal Total: -67.90 -1.70 -69.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358277999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.882 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds