Wall clock time and date at job start Tue Mar 31 2020 20:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33645 * 122.74617 * 2 1 4 4 S 1.76197 * 107.92297 * 179.76239 * 3 2 1 5 5 C 1.70983 * 90.28363 * 0.28672 * 4 3 2 6 6 C 1.50696 * 124.91659 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47230 * 194.69935 * 6 5 4 8 8 N 1.46498 * 109.47047 * 314.69822 * 6 5 4 9 9 C 1.34777 * 119.99828 * 204.72109 * 8 6 5 10 10 O 1.21593 * 119.99949 * 0.28071 * 9 8 6 11 11 N 1.34777 * 120.00128 * 180.27942 * 9 8 6 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47138 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99626 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00072 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00087 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00028 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00187 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00373 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99948 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47496 * 89.99675 * 20 18 16 22 22 H 1.48503 * 109.47098 * 209.99811 * 20 18 16 23 23 H 1.48501 * 109.47427 * 329.99500 * 20 18 16 24 24 C 1.52999 * 109.47087 * 74.69920 * 6 5 4 25 25 C 1.52997 * 117.49900 * 248.62185 * 24 6 5 26 26 C 1.52995 * 117.50111 * 179.97438 * 24 6 5 27 27 N 1.29032 * 110.16406 * 359.71386 * 5 4 3 28 28 H 1.09001 * 109.47290 * 270.01452 * 1 2 3 29 29 H 1.09002 * 109.47770 * 30.01851 * 1 2 3 30 30 H 1.09005 * 109.47103 * 150.01651 * 1 2 3 31 31 H 1.07998 * 126.03748 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00384 * 25.00556 * 8 6 5 33 33 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 34 34 H 1.09000 * 109.47602 * 299.99940 * 12 11 9 35 35 H 1.09006 * 109.46868 * 59.99976 * 12 11 9 36 36 H 0.97002 * 120.00040 * 0.02562 * 15 13 12 37 37 H 0.96997 * 120.00513 * 180.02562 * 19 18 16 38 38 H 1.09007 * 115.54818 * 34.32748 * 24 6 5 39 39 H 1.08998 * 117.50293 * 359.97438 * 25 24 6 40 40 H 1.09002 * 117.49968 * 145.02380 * 25 24 6 41 41 H 1.08995 * 117.49999 * 214.98157 * 26 24 6 42 42 H 1.09006 * 117.49891 * 359.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1241 0.0000 4 16 3.9332 0.6733 0.0070 5 6 3.5040 -0.9818 0.0006 6 6 4.4835 -2.1269 0.0018 7 1 3.9656 -3.0484 -0.2637 8 7 5.5435 -1.8638 -0.9747 9 6 6.2286 -2.8893 -1.5183 10 8 5.9636 -4.0331 -1.2020 11 7 7.2075 -2.6470 -2.4124 12 6 7.9519 -3.7617 -3.0037 13 6 8.9816 -3.2249 -3.9642 14 8 9.0838 -2.0287 -4.1375 15 7 9.7894 -4.0738 -4.6300 16 6 10.7258 -3.5854 -5.5042 17 1 10.8163 -2.5204 -5.6592 18 6 11.5589 -4.4605 -6.1902 19 7 12.4568 -3.9924 -7.0278 20 14 11.4029 -6.3025 -5.9217 21 1 10.4281 -6.8633 -6.8915 22 1 12.7263 -6.9458 -6.1219 23 1 10.9302 -6.5628 -4.5382 24 6 5.0983 -2.2708 1.3954 25 6 6.5806 -1.9263 1.5527 26 6 6.1246 -3.3863 1.6032 27 7 2.2199 -1.1083 0.0002 28 1 -0.3634 0.0003 1.0277 29 1 -0.3635 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5136 31 1 1.8390 2.1308 -0.0004 32 1 5.7550 -0.9514 -1.2270 33 1 7.4187 -1.7346 -2.6650 34 1 8.4497 -4.3254 -2.2146 35 1 7.2629 -4.4158 -3.5382 36 1 9.7079 -5.0303 -4.4911 37 1 13.0382 -4.6033 -7.5069 38 1 4.4354 -2.0355 2.2282 39 1 7.1181 -1.5975 0.6632 40 1 6.8934 -1.4641 2.4890 41 1 6.1373 -3.8843 2.5726 42 1 6.3616 -4.0180 0.7470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358278000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:46 Heat of formation + Delta-G solvation = 17.579790 kcal Electronic energy + Delta-G solvation = -26171.760775 eV Core-core repulsion = 22280.251745 eV Total energy + Delta-G solvation = -3891.509030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73596 -39.99172 -38.61431 -37.41526 -34.52926 -34.34792 -33.75365 -32.37709 -31.80771 -29.05377 -27.95907 -27.14229 -24.31711 -23.60185 -22.42042 -21.39519 -20.47288 -19.91214 -19.60970 -18.85684 -18.50496 -17.81223 -16.65255 -16.43787 -15.80739 -15.33578 -15.27853 -15.11972 -14.94262 -14.56001 -14.29140 -14.06833 -13.80468 -13.56283 -13.15923 -13.05321 -12.89362 -12.80166 -12.51393 -12.20131 -12.15506 -12.08299 -11.66153 -11.55801 -11.24458 -10.65144 -10.58795 -10.37324 -10.16951 -10.07283 -9.91302 -9.77846 -9.71202 -9.30132 -9.06956 -8.84050 -8.79125 -8.31936 -6.41984 -3.94739 0.29593 0.97120 1.38411 2.28879 2.59797 2.98881 3.03728 3.12090 3.16070 3.52752 3.55365 3.78220 4.02461 4.15698 4.45924 4.56744 4.63430 4.76690 4.84110 4.86995 5.00766 5.12957 5.17745 5.21334 5.28616 5.42553 5.51171 5.61762 5.64311 5.76035 5.77463 5.81668 5.85738 6.00317 6.22991 6.28045 6.58321 6.83510 7.37769 7.43333 7.97339 8.02600 8.42330 8.58803 8.80323 9.28352 9.61638 10.70091 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002276 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.203084 B =12297.866755 C =12773.307423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 C -0.263 4.263 4 S 0.139 5.861 5 C 0.047 3.953 6 C 0.275 3.725 7 H 0.123 0.877 8 N -0.744 5.744 9 C 0.712 3.288 10 O -0.585 6.585 11 N -0.721 5.721 12 C 0.126 3.874 13 C 0.438 3.562 14 O -0.579 6.579 15 N -0.576 5.576 16 C -0.310 4.310 17 H 0.121 0.879 18 C 0.045 3.955 19 N -0.874 5.874 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.266 1.266 24 C -0.173 4.173 25 C -0.173 4.173 26 C -0.172 4.172 27 N -0.460 5.460 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.178 0.822 32 H 0.396 0.604 33 H 0.409 0.591 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.375 0.625 37 H 0.276 0.724 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.894 7.044 17.574 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.402 4.402 4 S 0.395 5.605 5 C -0.231 4.231 6 C 0.166 3.834 7 H 0.140 0.860 8 N -0.401 5.401 9 C 0.412 3.588 10 O -0.464 6.464 11 N -0.379 5.379 12 C -0.003 4.003 13 C 0.224 3.776 14 O -0.464 6.464 15 N -0.213 5.213 16 C -0.438 4.438 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.513 5.513 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.192 1.192 24 C -0.194 4.194 25 C -0.210 4.210 26 C -0.209 4.209 27 N -0.175 5.175 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.196 0.804 32 H 0.231 0.769 33 H 0.246 0.754 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.208 0.792 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.111 6.759 17.535 26.803 hybrid contribution -0.702 -0.449 -0.125 0.843 sum -19.813 6.310 17.410 27.120 Atomic orbital electron populations 1.20373 0.86872 1.03551 1.03037 1.20343 0.98392 0.86304 1.01477 1.26911 0.95232 1.04127 1.13972 1.84051 1.07151 1.02302 1.67043 1.26954 0.94134 0.98110 1.03933 1.18486 0.83777 0.94013 0.87147 0.85951 1.45142 1.38993 1.08930 1.47017 1.15676 0.79488 0.84518 0.79137 1.90862 1.70277 1.19727 1.65525 1.44748 1.36692 1.11452 1.44960 1.20838 0.94104 0.88589 0.96732 1.19638 0.85215 0.87327 0.85460 1.90539 1.72488 1.15156 1.68200 1.42112 1.32562 1.07556 1.39087 1.19430 1.10400 0.96754 1.17260 0.86091 1.25069 0.95872 0.98820 0.96171 1.69614 1.20052 1.35673 1.25942 0.86671 0.78971 0.84928 0.78925 1.19385 1.19987 1.19175 1.22639 0.92814 1.07494 0.96461 1.22974 0.95352 0.99532 1.03141 1.23401 1.01067 0.91841 1.04560 1.66055 1.04166 1.31827 1.15411 0.90550 0.90627 0.90387 0.80426 0.76897 0.75378 0.89679 0.89731 0.79216 0.91372 0.87194 0.88486 0.88958 0.89135 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.31 36.00 0.37 -0.13 16 2 C 0.07 0.63 6.74 -84.23 -0.57 0.06 16 3 C -0.26 -2.08 11.13 29.12 0.32 -1.75 16 4 S 0.14 1.16 22.29 -107.50 -2.40 -1.23 16 5 C 0.05 0.50 6.28 -13.46 -0.08 0.42 16 6 C 0.28 3.08 2.94 -69.09 -0.20 2.88 16 7 H 0.12 1.62 7.58 -51.93 -0.39 1.22 16 8 N -0.74 -8.51 3.61 -59.82 -0.22 -8.72 16 9 C 0.71 10.29 7.38 -86.92 -0.64 9.65 16 10 O -0.59 -9.86 13.36 5.28 0.07 -9.79 16 11 N -0.72 -10.95 5.53 -66.41 -0.37 -11.31 16 12 C 0.13 2.10 6.15 -5.19 -0.03 2.06 16 13 C 0.44 9.37 7.85 -10.98 -0.09 9.28 16 14 O -0.58 -14.28 15.24 5.55 0.08 -14.20 16 15 N -0.58 -13.14 5.09 -10.96 -0.06 -13.20 16 16 C -0.31 -8.44 10.16 -14.94 -0.15 -8.59 16 17 H 0.12 3.75 7.39 -52.49 -0.39 3.37 16 18 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 19 N -0.87 -24.77 13.96 55.50 0.77 -23.99 16 20 Si 0.88 18.82 27.74 -169.99 -4.71 14.11 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 24 C -0.17 -1.77 5.69 -90.62 -0.52 -2.29 16 25 C -0.17 -1.75 9.73 -26.71 -0.26 -2.01 16 26 C -0.17 -1.94 9.82 -26.71 -0.26 -2.20 16 27 N -0.46 -5.28 10.53 -8.06 -0.08 -5.36 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.40 3.89 7.81 -40.82 -0.32 3.57 16 33 H 0.41 6.13 7.45 -40.82 -0.30 5.82 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 37 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.11 1.04 8.11 -51.92 -0.42 0.62 16 39 H 0.10 1.06 6.66 -51.93 -0.35 0.72 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.13 1.76 5.00 -51.93 -0.26 1.50 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -32.35 366.86 -8.80 -41.15 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -5.21 Total: 18.55 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -2.21 Total: 8.48 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.05 Total: -62.59 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.16 Total: -23.99 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.71 Total: 14.11 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.40 Total: -1.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.35 -8.80 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.728 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds