Wall clock time and date at job start Tue Mar 31 2020 20:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33645 * 122.74617 * 2 1 4 4 S 1.76197 * 107.92297 * 179.76239 * 3 2 1 5 5 C 1.70983 * 90.28363 * 0.28672 * 4 3 2 6 6 C 1.50696 * 124.91659 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47230 * 194.69935 * 6 5 4 8 8 N 1.46498 * 109.47047 * 314.69822 * 6 5 4 9 9 C 1.34777 * 119.99828 * 204.72109 * 8 6 5 10 10 O 1.21593 * 119.99949 * 0.28071 * 9 8 6 11 11 N 1.34777 * 120.00128 * 180.27942 * 9 8 6 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47138 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99626 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00072 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00087 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00028 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00187 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00373 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99948 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47496 * 89.99675 * 20 18 16 22 22 H 1.48503 * 109.47098 * 209.99811 * 20 18 16 23 23 H 1.48501 * 109.47427 * 329.99500 * 20 18 16 24 24 C 1.52999 * 109.47087 * 74.69920 * 6 5 4 25 25 C 1.52997 * 117.49900 * 248.62185 * 24 6 5 26 26 C 1.52995 * 117.50111 * 179.97438 * 24 6 5 27 27 N 1.29032 * 110.16406 * 359.71386 * 5 4 3 28 28 H 1.09001 * 109.47290 * 270.01452 * 1 2 3 29 29 H 1.09002 * 109.47770 * 30.01851 * 1 2 3 30 30 H 1.09005 * 109.47103 * 150.01651 * 1 2 3 31 31 H 1.07998 * 126.03748 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00384 * 25.00556 * 8 6 5 33 33 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 34 34 H 1.09000 * 109.47602 * 299.99940 * 12 11 9 35 35 H 1.09006 * 109.46868 * 59.99976 * 12 11 9 36 36 H 0.97002 * 120.00040 * 0.02562 * 15 13 12 37 37 H 0.96997 * 120.00513 * 180.02562 * 19 18 16 38 38 H 1.09007 * 115.54818 * 34.32748 * 24 6 5 39 39 H 1.08998 * 117.50293 * 359.97438 * 25 24 6 40 40 H 1.09002 * 117.49968 * 145.02380 * 25 24 6 41 41 H 1.08995 * 117.49999 * 214.98157 * 26 24 6 42 42 H 1.09006 * 117.49891 * 359.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1241 0.0000 4 16 3.9332 0.6733 0.0070 5 6 3.5040 -0.9818 0.0006 6 6 4.4835 -2.1269 0.0018 7 1 3.9656 -3.0484 -0.2637 8 7 5.5435 -1.8638 -0.9747 9 6 6.2286 -2.8893 -1.5183 10 8 5.9636 -4.0331 -1.2020 11 7 7.2075 -2.6470 -2.4124 12 6 7.9519 -3.7617 -3.0037 13 6 8.9816 -3.2249 -3.9642 14 8 9.0838 -2.0287 -4.1375 15 7 9.7894 -4.0738 -4.6300 16 6 10.7258 -3.5854 -5.5042 17 1 10.8163 -2.5204 -5.6592 18 6 11.5589 -4.4605 -6.1902 19 7 12.4568 -3.9924 -7.0278 20 14 11.4029 -6.3025 -5.9217 21 1 10.4281 -6.8633 -6.8915 22 1 12.7263 -6.9458 -6.1219 23 1 10.9302 -6.5628 -4.5382 24 6 5.0983 -2.2708 1.3954 25 6 6.5806 -1.9263 1.5527 26 6 6.1246 -3.3863 1.6032 27 7 2.2199 -1.1083 0.0002 28 1 -0.3634 0.0003 1.0277 29 1 -0.3635 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5136 31 1 1.8390 2.1308 -0.0004 32 1 5.7550 -0.9514 -1.2270 33 1 7.4187 -1.7346 -2.6650 34 1 8.4497 -4.3254 -2.2146 35 1 7.2629 -4.4158 -3.5382 36 1 9.7079 -5.0303 -4.4911 37 1 13.0382 -4.6033 -7.5069 38 1 4.4354 -2.0355 2.2282 39 1 7.1181 -1.5975 0.6632 40 1 6.8934 -1.4641 2.4890 41 1 6.1373 -3.8843 2.5726 42 1 6.3616 -4.0180 0.7470 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358278000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:46 Heat of formation + Delta-G solvation = -6.802035 kcal Electronic energy + Delta-G solvation = -26172.818050 eV Core-core repulsion = 22280.251745 eV Total energy + Delta-G solvation = -3892.566305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.75059 -40.86727 -40.26577 -38.45415 -36.26131 -35.39441 -35.16781 -33.82271 -33.10277 -30.10360 -28.73816 -28.30574 -26.10762 -24.36232 -23.26707 -22.48367 -21.47850 -21.30141 -20.81426 -20.42324 -19.64063 -18.79445 -17.66208 -17.48133 -17.40568 -16.72482 -16.53883 -16.24857 -15.97387 -15.68249 -15.48041 -15.26909 -14.91451 -14.74585 -14.40323 -14.27157 -13.99230 -13.81350 -13.60008 -13.44320 -13.34508 -12.96070 -12.95377 -12.43416 -12.41901 -12.27120 -11.99342 -11.56859 -11.56071 -11.27988 -11.13161 -10.67373 -10.63943 -10.49600 -10.35779 -10.30830 -10.01030 -9.72368 -8.44432 -6.06278 -0.39868 0.29557 0.71287 1.31596 1.34755 1.35210 1.45232 1.75421 1.80228 2.02483 2.21455 2.63964 2.83315 3.00142 3.12021 3.20054 3.76159 3.79616 3.99138 4.01780 4.15423 4.24659 4.32241 4.36033 4.40955 4.46300 4.53426 4.77517 4.81777 4.82222 4.91486 4.95579 5.13783 5.22983 5.28690 5.34347 5.42829 5.50324 5.77424 5.89620 6.49920 6.69099 6.79470 6.88107 7.29375 7.43105 7.79578 8.71901 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002276 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.203084 B =12297.866755 C =12773.307423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.043 3.957 3 C -0.254 4.254 4 S 0.168 5.832 5 C 0.024 3.976 6 C 0.279 3.721 7 H 0.098 0.902 8 N -0.730 5.730 9 C 0.715 3.285 10 O -0.607 6.607 11 N -0.724 5.724 12 C 0.139 3.861 13 C 0.446 3.554 14 O -0.614 6.614 15 N -0.578 5.578 16 C -0.329 4.329 17 H 0.064 0.936 18 C -0.009 4.009 19 N -0.926 5.926 20 Si 0.958 3.042 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.231 1.231 24 C -0.165 4.165 25 C -0.164 4.164 26 C -0.184 4.184 27 N -0.486 5.486 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.208 0.792 32 H 0.405 0.595 33 H 0.410 0.590 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.392 0.608 37 H 0.281 0.719 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.509 6.545 19.414 29.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.393 4.393 4 S 0.423 5.577 5 C -0.254 4.254 6 C 0.170 3.830 7 H 0.116 0.884 8 N -0.387 5.387 9 C 0.415 3.585 10 O -0.487 6.487 11 N -0.381 5.381 12 C 0.010 3.990 13 C 0.233 3.767 14 O -0.500 6.500 15 N -0.218 5.218 16 C -0.458 4.458 17 H 0.082 0.918 18 C -0.209 4.209 19 N -0.566 5.566 20 Si 0.778 3.222 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.155 1.155 24 C -0.186 4.186 25 C -0.201 4.201 26 C -0.220 4.220 27 N -0.202 5.202 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.225 0.775 32 H 0.242 0.758 33 H 0.247 0.753 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.228 0.772 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.757 6.284 19.404 29.101 hybrid contribution -0.270 -0.095 -0.680 0.738 sum -21.027 6.189 18.724 28.828 Atomic orbital electron populations 1.20454 0.85178 1.04127 1.03863 1.20789 0.99672 0.86181 1.02190 1.27337 0.94761 1.05172 1.11999 1.83911 1.07461 1.00196 1.66106 1.26744 0.93973 0.99076 1.05602 1.18357 0.83637 0.93636 0.87362 0.88406 1.45005 1.38418 1.08762 1.46541 1.15657 0.79300 0.84681 0.78862 1.90859 1.70866 1.20831 1.66183 1.44694 1.36998 1.11104 1.45317 1.20724 0.93139 0.88943 0.96151 1.20509 0.84775 0.86708 0.84665 1.90528 1.73326 1.17063 1.69068 1.41918 1.32305 1.08597 1.38993 1.19014 1.12670 0.94647 1.19511 0.91819 1.26063 0.94691 1.05050 0.95097 1.69777 1.21323 1.38184 1.27309 0.85456 0.79252 0.76578 0.80913 1.18193 1.19921 1.15450 1.22602 0.93018 1.06837 0.96140 1.23002 0.94908 0.98541 1.03636 1.23328 1.02305 0.92212 1.04199 1.66053 1.04791 1.33490 1.15893 0.89572 0.88492 0.91366 0.77484 0.75840 0.75283 0.87664 0.87912 0.77219 0.90964 0.86120 0.89368 0.87110 0.87829 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.31 71.23 0.73 -0.12 16 2 C 0.04 0.74 6.74 41.52 0.28 1.02 16 3 C -0.25 -3.36 11.13 66.78 0.74 -2.61 16 4 S 0.17 2.49 22.29 -56.49 -1.26 1.23 16 5 C 0.02 0.48 6.28 88.52 0.56 1.04 16 6 C 0.28 6.13 2.94 44.24 0.13 6.26 16 7 H 0.10 2.64 7.58 -2.39 -0.02 2.63 16 8 N -0.73 -16.22 3.61 -461.42 -1.67 -17.89 16 9 C 0.71 20.10 7.38 179.05 1.32 21.42 16 10 O -0.61 -20.06 13.36 -4.01 -0.05 -20.11 16 11 N -0.72 -21.24 5.53 -482.28 -2.67 -23.91 16 12 C 0.14 4.38 6.15 85.63 0.53 4.90 16 13 C 0.45 18.94 7.85 87.66 0.69 19.63 16 14 O -0.61 -30.89 15.24 -3.07 -0.05 -30.94 16 15 N -0.58 -26.12 5.09 -306.99 -1.56 -27.68 16 16 C -0.33 -18.49 10.16 84.04 0.85 -17.64 16 17 H 0.06 4.23 7.39 -2.91 -0.02 4.20 16 18 C -0.01 -0.49 5.50 84.92 0.47 -0.02 16 19 N -0.93 -54.15 13.96 21.66 0.30 -53.85 16 20 Si 0.96 37.84 27.74 68.60 1.90 39.74 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 24 C -0.17 -3.21 5.69 -10.80 -0.06 -3.27 16 25 C -0.16 -3.05 9.73 30.61 0.30 -2.75 16 26 C -0.18 -3.97 9.82 30.61 0.30 -3.67 16 27 N -0.49 -10.82 10.53 -179.40 -1.89 -12.71 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.41 7.57 7.81 -92.71 -0.72 6.84 16 33 H 0.41 12.06 7.45 -92.71 -0.69 11.37 16 34 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 36 H 0.39 14.85 5.76 -92.71 -0.53 14.32 16 37 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 38 H 0.12 2.10 8.11 -2.38 -0.02 2.08 16 39 H 0.09 1.81 6.66 -2.39 -0.02 1.80 16 40 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.10 2.76 5.00 -2.38 -0.01 2.75 16 Total: -1.00 -73.89 366.86 -1.01 -74.90 By element: Atomic # 1 Polarization: 47.92 SS G_CDS: -0.90 Total: 47.01 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.84 Total: 24.19 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -7.49 Total: -136.03 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.10 Total: -51.04 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.90 Total: 39.74 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.26 Total: 1.23 kcal Total: -73.89 -1.01 -74.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.101 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds