Wall clock time and date at job start Tue Mar 31 2020 21:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 120.00134 * 2 1 4 4 N 1.46507 * 109.46638 * 124.99783 * 3 2 1 5 5 C 1.46499 * 119.99971 * 270.00035 * 4 3 2 6 6 C 1.50706 * 109.47119 * 270.00200 * 5 4 3 7 7 H 1.07997 * 119.99651 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99828 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00279 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46990 * 89.99951 * 10 8 6 12 12 H 1.48498 * 109.47065 * 209.99761 * 10 8 6 13 13 H 1.48498 * 109.47221 * 329.99978 * 10 8 6 14 14 C 1.34775 * 119.99851 * 90.00821 * 4 3 2 15 15 O 1.21283 * 119.99925 * 179.97438 * 14 4 3 16 16 C 1.50703 * 120.00069 * 359.97438 * 14 4 3 17 17 N 1.46499 * 109.47138 * 180.02562 * 16 14 4 18 18 C 1.34777 * 119.99665 * 180.28062 * 17 16 14 19 19 O 1.21583 * 120.00270 * 359.72083 * 18 17 16 20 20 C 1.47577 * 119.99657 * 179.72390 * 18 17 16 21 21 C 1.39735 * 120.14132 * 359.72117 * 20 18 17 22 22 C 1.37731 * 119.90119 * 179.74286 * 21 20 18 23 23 C 1.38762 * 120.19506 * 0.53604 * 22 21 20 24 24 F 1.35097 * 119.85950 * 179.76408 * 23 22 21 25 25 C 1.38494 * 120.28296 * 359.73707 * 23 22 21 26 26 C 1.38199 * 120.09370 * 359.97438 * 25 23 22 27 27 F 1.35103 * 120.09784 * 179.97438 * 26 25 23 28 28 H 1.08000 * 119.99992 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99710 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99978 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46715 * 5.00582 * 3 2 1 32 32 H 1.08991 * 109.47191 * 244.99916 * 3 2 1 33 33 H 1.08998 * 109.47138 * 30.00322 * 5 4 3 34 34 H 1.08996 * 109.46665 * 150.00661 * 5 4 3 35 35 H 0.97006 * 120.00308 * 179.97438 * 9 8 6 36 36 H 1.09009 * 109.46601 * 60.00324 * 16 14 4 37 37 H 1.08998 * 109.47035 * 300.00831 * 16 14 4 38 38 H 0.97001 * 119.99790 * 359.97438 * 17 16 14 39 39 H 1.08003 * 120.04759 * 0.02562 * 21 20 18 40 40 H 1.07998 * 119.90258 * 180.27136 * 22 21 20 41 41 H 1.07994 * 119.95509 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5588 1.8648 2.4250 6 6 2.8443 3.3435 2.4806 7 1 3.3034 3.8369 1.6367 8 6 2.5193 4.0663 3.6088 9 7 1.9599 3.4656 4.6362 10 14 2.8725 5.8994 3.6775 11 1 1.6991 6.6493 3.1615 12 1 3.1372 6.3002 5.0826 13 1 4.0619 6.2060 2.8428 14 6 4.2497 0.8661 0.9825 15 8 5.0200 0.8886 1.9191 16 6 4.6970 0.3174 -0.3479 17 7 6.0913 -0.1216 -0.2512 18 6 6.7091 -0.6454 -1.3285 19 8 6.1077 -0.7582 -2.3792 20 6 8.1155 -1.0821 -1.2328 21 6 8.8112 -0.9485 -0.0283 22 6 10.1221 -1.3626 0.0570 23 6 10.7573 -1.9017 -1.0527 24 9 12.0446 -2.3013 -0.9627 25 6 10.0769 -2.0326 -2.2519 26 6 8.7595 -1.6264 -2.3491 27 9 8.0959 -1.7535 -3.5190 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6213 1.4026 -0.9313 33 1 1.4887 1.6965 2.5460 34 1 3.0989 1.3601 3.2260 35 1 1.7316 3.9741 5.4301 36 1 4.6121 1.0940 -1.1082 37 1 4.0678 -0.5294 -0.6218 38 1 6.5712 -0.0313 0.5869 39 1 8.3204 -0.5254 0.8357 40 1 10.6584 -1.2634 0.9891 41 1 10.5766 -2.4525 -3.1123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359398093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:15 Heat of formation + Delta-G solvation = -106.081108 kcal Electronic energy + Delta-G solvation = -28147.282174 eV Core-core repulsion = 23664.277668 eV Total energy + Delta-G solvation = -4483.004507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.50342 -49.23345 -40.37965 -39.26332 -38.26028 -35.92544 -34.53128 -33.25326 -32.19852 -31.72533 -31.03277 -28.74591 -26.88412 -25.48475 -24.24201 -23.45821 -22.58376 -20.83410 -20.06409 -19.25586 -18.55273 -17.95379 -17.55777 -16.65749 -16.45120 -16.30948 -16.17525 -15.83304 -15.75509 -15.44924 -15.37627 -14.90820 -14.77503 -14.67736 -14.37527 -14.21394 -13.68722 -13.37457 -13.21261 -12.75679 -12.64787 -12.49708 -12.30877 -12.02146 -11.94305 -11.75764 -11.36838 -11.12504 -10.95771 -10.68029 -10.27812 -10.17926 -9.74149 -9.62338 -9.33825 -9.26903 -9.20652 -9.09125 -8.50802 -7.87437 -6.11921 -4.17227 0.11254 0.54122 2.37530 2.38703 2.83713 3.11142 3.24071 3.25515 3.32595 3.35578 3.36811 3.84672 3.88539 4.06531 4.33120 4.37682 4.38090 4.64266 4.81502 5.14207 5.20020 5.23007 5.26315 5.32812 5.38478 5.43580 5.47227 5.51749 5.55285 5.60724 5.96574 6.10589 6.18157 6.21587 6.74945 6.82387 6.95775 7.30706 7.34309 7.40928 7.83282 7.99266 8.13226 8.20742 8.70174 8.89412 9.48107 10.96207 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.002627 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.349369 B =10655.673475 C =12163.362815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.171 4.171 3 C 0.131 3.869 4 N -0.584 5.584 5 C 0.247 3.753 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.501 3.499 15 O -0.540 6.540 16 C 0.098 3.902 17 N -0.706 5.706 18 C 0.560 3.440 19 O -0.528 6.528 20 C -0.181 4.181 21 C -0.024 4.024 22 C -0.170 4.170 23 C 0.156 3.844 24 F -0.126 7.126 25 C -0.205 4.205 26 C 0.192 3.808 27 F -0.105 7.105 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.411 0.589 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.531 -11.299 -12.062 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.190 4.190 3 C 0.008 3.992 4 N -0.315 5.315 5 C 0.128 3.872 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.286 3.714 15 O -0.418 6.418 16 C -0.029 4.029 17 N -0.361 5.361 18 C 0.346 3.654 19 O -0.405 6.405 20 C -0.185 4.185 21 C -0.043 4.043 22 C -0.189 4.189 23 C 0.136 3.864 24 F -0.105 7.105 25 C -0.225 4.225 26 C 0.171 3.829 27 F -0.083 7.083 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.251 0.749 39 H 0.171 0.829 40 H 0.169 0.831 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.410 -11.313 -12.126 20.130 hybrid contribution 0.401 0.950 0.327 1.082 sum 11.811 -10.363 -11.799 19.649 Atomic orbital electron populations 1.23832 0.95814 1.01870 1.00087 1.23381 0.96477 0.98846 1.00324 1.20689 0.93298 0.95748 0.89506 1.48189 1.10009 1.59245 1.14013 1.19346 0.95631 0.93866 0.78316 1.21405 1.40899 0.93177 1.01338 0.92372 1.24926 0.94962 0.98813 0.95291 1.69929 1.41830 1.36245 1.05187 0.86493 0.78653 0.84876 0.77381 1.20601 1.21065 1.19869 1.20150 0.83057 0.79079 0.89068 1.90654 1.52532 1.57053 1.41583 1.21263 0.82902 1.01230 0.97474 1.45597 1.13333 1.62809 1.14380 1.17779 0.85571 0.78186 0.83880 1.90852 1.66284 1.55053 1.28325 1.20111 0.95866 1.07911 0.94633 1.21219 0.93126 0.93613 0.96363 1.21181 0.95845 1.02854 0.99044 1.17523 0.79015 0.96027 0.93844 1.91561 1.34327 1.87864 1.96706 1.21008 0.94108 1.07947 0.99441 1.17235 0.89115 0.95139 0.81427 1.91639 1.80011 1.92515 1.44124 0.88679 0.88199 0.87700 0.88995 0.90448 0.94654 0.93710 0.92633 0.88517 0.88613 0.74942 0.82938 0.83053 0.82684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 14.32 29.01 0.42 -1.80 16 2 C -0.17 -2.32 9.74 -36.03 -0.35 -2.67 16 3 C 0.13 2.00 5.65 -5.19 -0.03 1.98 16 4 N -0.58 -11.46 2.44 -176.43 -0.43 -11.89 16 5 C 0.25 6.12 5.16 -5.19 -0.03 6.09 16 6 C -0.53 -14.34 9.39 -34.44 -0.32 -14.66 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 10 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.50 9.43 7.74 -10.98 -0.09 9.34 16 15 O -0.54 -11.94 15.25 5.56 0.08 -11.86 16 16 C 0.10 1.44 4.71 -5.19 -0.02 1.41 16 17 N -0.71 -9.64 5.48 -62.51 -0.34 -9.98 16 18 C 0.56 7.76 7.76 -12.45 -0.10 7.66 16 19 O -0.53 -8.87 15.34 5.29 0.08 -8.79 16 20 C -0.18 -2.02 5.88 -104.91 -0.62 -2.63 16 21 C -0.02 -0.21 9.53 -39.21 -0.37 -0.58 16 22 C -0.17 -1.25 10.01 -39.57 -0.40 -1.65 16 23 C 0.16 1.26 7.30 -39.29 -0.29 0.97 16 24 F -0.13 -1.05 17.26 2.25 0.04 -1.01 16 25 C -0.21 -1.73 9.99 -39.50 -0.39 -2.12 16 26 C 0.19 2.08 7.28 -38.97 -0.28 1.80 16 27 F -0.11 -1.36 15.55 2.25 0.04 -1.32 16 28 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 30 H 0.11 1.34 7.83 -52.49 -0.41 0.93 16 31 H 0.09 1.46 7.72 -51.93 -0.40 1.05 16 32 H 0.08 0.99 6.44 -51.93 -0.33 0.66 16 33 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.10 1.34 7.40 -51.92 -0.38 0.96 16 37 H 0.10 1.28 7.77 -51.93 -0.40 0.88 16 38 H 0.41 5.31 5.46 -40.82 -0.22 5.08 16 39 H 0.15 1.11 6.40 -52.48 -0.34 0.78 16 40 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -32.93 368.03 -6.76 -39.69 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.52 Total: 3.67 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -2.97 Total: 4.75 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.04 Total: -46.85 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.17 Total: -20.65 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.07 Total: -2.33 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.93 -6.76 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359398093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.388 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds