Wall clock time and date at job start Tue Mar 31 2020 21:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 120.00134 * 2 1 4 4 N 1.46507 * 109.46638 * 124.99783 * 3 2 1 5 5 C 1.46499 * 119.99971 * 270.00035 * 4 3 2 6 6 C 1.50706 * 109.47119 * 270.00200 * 5 4 3 7 7 H 1.07997 * 119.99651 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99828 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00279 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46990 * 89.99951 * 10 8 6 12 12 H 1.48498 * 109.47065 * 209.99761 * 10 8 6 13 13 H 1.48498 * 109.47221 * 329.99978 * 10 8 6 14 14 C 1.34775 * 119.99851 * 90.00821 * 4 3 2 15 15 O 1.21283 * 119.99925 * 179.97438 * 14 4 3 16 16 C 1.50703 * 120.00069 * 359.97438 * 14 4 3 17 17 N 1.46499 * 109.47138 * 180.02562 * 16 14 4 18 18 C 1.34777 * 119.99665 * 180.28062 * 17 16 14 19 19 O 1.21583 * 120.00270 * 359.72083 * 18 17 16 20 20 C 1.47577 * 119.99657 * 179.72390 * 18 17 16 21 21 C 1.39735 * 120.14132 * 359.72117 * 20 18 17 22 22 C 1.37731 * 119.90119 * 179.74286 * 21 20 18 23 23 C 1.38762 * 120.19506 * 0.53604 * 22 21 20 24 24 F 1.35097 * 119.85950 * 179.76408 * 23 22 21 25 25 C 1.38494 * 120.28296 * 359.73707 * 23 22 21 26 26 C 1.38199 * 120.09370 * 359.97438 * 25 23 22 27 27 F 1.35103 * 120.09784 * 179.97438 * 26 25 23 28 28 H 1.08000 * 119.99992 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99710 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99978 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46715 * 5.00582 * 3 2 1 32 32 H 1.08991 * 109.47191 * 244.99916 * 3 2 1 33 33 H 1.08998 * 109.47138 * 30.00322 * 5 4 3 34 34 H 1.08996 * 109.46665 * 150.00661 * 5 4 3 35 35 H 0.97006 * 120.00308 * 179.97438 * 9 8 6 36 36 H 1.09009 * 109.46601 * 60.00324 * 16 14 4 37 37 H 1.08998 * 109.47035 * 300.00831 * 16 14 4 38 38 H 0.97001 * 119.99790 * 359.97438 * 17 16 14 39 39 H 1.08003 * 120.04759 * 0.02562 * 21 20 18 40 40 H 1.07998 * 119.90258 * 180.27136 * 22 21 20 41 41 H 1.07994 * 119.95509 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5588 1.8648 2.4250 6 6 2.8443 3.3435 2.4806 7 1 3.3034 3.8369 1.6367 8 6 2.5193 4.0663 3.6088 9 7 1.9599 3.4656 4.6362 10 14 2.8725 5.8994 3.6775 11 1 1.6991 6.6493 3.1615 12 1 3.1372 6.3002 5.0826 13 1 4.0619 6.2060 2.8428 14 6 4.2497 0.8661 0.9825 15 8 5.0200 0.8886 1.9191 16 6 4.6970 0.3174 -0.3479 17 7 6.0913 -0.1216 -0.2512 18 6 6.7091 -0.6454 -1.3285 19 8 6.1077 -0.7582 -2.3792 20 6 8.1155 -1.0821 -1.2328 21 6 8.8112 -0.9485 -0.0283 22 6 10.1221 -1.3626 0.0570 23 6 10.7573 -1.9017 -1.0527 24 9 12.0446 -2.3013 -0.9627 25 6 10.0769 -2.0326 -2.2519 26 6 8.7595 -1.6264 -2.3491 27 9 8.0959 -1.7535 -3.5190 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6213 1.4026 -0.9313 33 1 1.4887 1.6965 2.5460 34 1 3.0989 1.3601 3.2260 35 1 1.7316 3.9741 5.4301 36 1 4.6121 1.0940 -1.1082 37 1 4.0678 -0.5294 -0.6218 38 1 6.5712 -0.0313 0.5869 39 1 8.3204 -0.5254 0.8357 40 1 10.6584 -1.2634 0.9891 41 1 10.5766 -2.4525 -3.1123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359398093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:15 Heat of formation + Delta-G solvation = -126.467033 kcal Electronic energy + Delta-G solvation = -28148.166174 eV Core-core repulsion = 23664.277668 eV Total energy + Delta-G solvation = -4483.888507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.16142 -50.10176 -41.50831 -40.57350 -39.18350 -37.37242 -35.75577 -35.05524 -33.70830 -32.54790 -31.77484 -30.32828 -28.34823 -26.90279 -25.25719 -24.54914 -23.91481 -21.85971 -21.24993 -20.43292 -19.48727 -19.00151 -18.61213 -18.40906 -17.68346 -17.31693 -17.25069 -16.86245 -16.83447 -16.54813 -16.43054 -16.29586 -15.89578 -15.71099 -15.53590 -15.36960 -14.76033 -14.54735 -14.27941 -14.19856 -13.94116 -13.65805 -13.55517 -13.30964 -13.04019 -13.00614 -12.86749 -12.59899 -12.57508 -12.24853 -12.20882 -11.67532 -11.30049 -10.82146 -10.63186 -10.45222 -10.32198 -10.26257 -9.91845 -9.54357 -8.21824 -6.35937 -0.65681 -0.13506 1.29351 1.38980 1.40812 1.48864 1.50994 1.63518 1.75386 2.35320 2.38327 2.49108 2.64441 3.08838 3.15242 3.39314 3.41257 3.51724 3.74611 3.96388 4.04790 4.17718 4.23243 4.30459 4.45355 4.53454 4.56778 4.74789 4.83403 4.86698 4.87981 4.95621 5.04863 5.11189 5.23356 5.48153 5.52912 5.71482 5.74903 5.92361 6.05556 6.28446 6.58663 6.73616 6.94947 7.18704 7.37036 8.85464 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.002627 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.349369 B =10655.673475 C =12163.362815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.187 4.187 3 C 0.129 3.871 4 N -0.589 5.589 5 C 0.265 3.735 6 C -0.542 4.542 7 H 0.055 0.945 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.965 3.035 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.498 3.502 15 O -0.579 6.579 16 C 0.112 3.888 17 N -0.705 5.705 18 C 0.561 3.439 19 O -0.562 6.562 20 C -0.197 4.197 21 C -0.020 4.020 22 C -0.157 4.157 23 C 0.160 3.840 24 F -0.124 7.124 25 C -0.196 4.196 26 C 0.173 3.827 27 F -0.123 7.123 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.023 0.977 34 H 0.004 0.996 35 H 0.267 0.733 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.415 0.585 39 H 0.164 0.836 40 H 0.179 0.821 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.594 -11.219 -12.814 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C 0.007 3.993 4 N -0.319 5.319 5 C 0.144 3.856 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.790 3.210 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.286 3.714 15 O -0.460 6.460 16 C -0.015 4.015 17 N -0.360 5.360 18 C 0.350 3.650 19 O -0.442 6.442 20 C -0.201 4.201 21 C -0.039 4.039 22 C -0.176 4.176 23 C 0.140 3.860 24 F -0.103 7.103 25 C -0.215 4.215 26 C 0.152 3.848 27 F -0.101 7.101 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.041 0.959 34 H 0.022 0.978 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.255 0.745 39 H 0.182 0.818 40 H 0.196 0.804 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 12.467 -11.244 -12.908 21.177 hybrid contribution 0.099 0.868 0.585 1.051 sum 12.565 -10.377 -12.323 20.431 Atomic orbital electron populations 1.24059 0.95547 1.02936 0.97962 1.23315 0.96882 0.98217 1.02189 1.20905 0.92947 0.96623 0.88859 1.48122 1.11241 1.59080 1.13468 1.18766 0.94161 0.92729 0.79979 1.21690 1.40694 0.94358 1.01357 0.92663 1.25794 0.94677 1.03459 0.94908 1.70044 1.42758 1.38049 1.05787 0.85455 0.78811 0.79381 0.77400 1.19199 1.20751 1.19631 1.20798 0.82250 0.78197 0.90165 1.90626 1.53526 1.58513 1.43323 1.21145 0.83780 1.01992 0.94580 1.45597 1.12948 1.62741 1.14682 1.18133 0.86472 0.77333 0.83103 1.90827 1.67321 1.56572 1.29437 1.20008 0.94651 1.09495 0.95963 1.21333 0.93538 0.93311 0.95679 1.21451 0.95190 1.01102 0.99852 1.17587 0.78977 0.95588 0.93859 1.91575 1.34217 1.87783 1.96678 1.21133 0.93057 1.06957 1.00374 1.17443 0.90001 0.96430 0.80899 1.91591 1.80548 1.92866 1.45088 0.86630 0.88146 0.86812 0.89863 0.87705 0.95856 0.97757 0.92418 0.87297 0.86883 0.74487 0.81824 0.80362 0.80820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 14.32 67.78 0.97 -2.93 16 2 C -0.19 -4.86 9.74 25.64 0.25 -4.61 16 3 C 0.13 3.85 5.65 85.63 0.48 4.33 16 4 N -0.59 -23.37 2.44 -830.48 -2.03 -25.39 16 5 C 0.26 13.54 5.16 85.63 0.44 13.98 16 6 C -0.54 -29.87 9.39 25.60 0.24 -29.63 16 7 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.61 5.46 84.65 0.46 1.07 16 9 N -0.93 -54.30 13.29 21.45 0.28 -54.01 16 10 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 C 0.50 18.85 7.74 87.66 0.68 19.53 16 15 O -0.58 -26.18 15.25 -3.04 -0.05 -26.23 16 16 C 0.11 3.17 4.71 85.63 0.40 3.58 16 17 N -0.70 -18.81 5.48 -469.95 -2.57 -21.39 16 18 C 0.56 15.33 7.76 86.71 0.67 16.00 16 19 O -0.56 -18.80 15.34 -3.98 -0.06 -18.86 16 20 C -0.20 -4.24 5.88 -20.05 -0.12 -4.36 16 21 C -0.02 -0.31 9.53 22.51 0.21 -0.09 16 22 C -0.16 -1.89 10.01 22.28 0.22 -1.67 16 23 C 0.16 2.18 7.30 22.46 0.16 2.35 16 24 F -0.12 -1.73 17.26 44.97 0.78 -0.96 16 25 C -0.20 -2.96 9.99 22.32 0.22 -2.74 16 26 C 0.17 3.64 7.28 22.66 0.17 3.80 16 27 F -0.12 -3.19 15.55 44.97 0.70 -2.49 16 28 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.10 2.32 7.84 -2.91 -0.02 2.30 16 30 H 0.11 2.75 7.83 -2.91 -0.02 2.73 16 31 H 0.08 2.62 7.72 -2.38 -0.02 2.60 16 32 H 0.11 2.52 6.44 -2.39 -0.02 2.51 16 33 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 34 H 0.00 0.25 7.42 -2.39 -0.02 0.24 16 35 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 36 H 0.11 2.87 7.40 -2.38 -0.02 2.85 16 37 H 0.11 2.86 7.77 -2.39 -0.02 2.84 16 38 H 0.42 10.53 5.46 -92.71 -0.51 10.02 16 39 H 0.16 2.12 6.40 -2.91 -0.02 2.10 16 40 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -72.64 368.03 5.13 -67.50 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.58 Total: 17.73 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 5.48 Total: 18.61 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.32 Total: -100.79 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -0.11 Total: -45.09 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 1.48 Total: -3.45 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -72.64 5.13 -67.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359398093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.963 kcal (2) G-P(sol) polarization free energy of solvation -72.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds