Wall clock time and date at job start Tue Mar 31 2020 21:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50696 * 109.47215 * 2 1 4 4 N 1.30009 * 127.40358 * 269.95597 * 3 2 1 5 5 O 1.20859 * 113.52967 * 180.02562 * 4 3 2 6 6 C 1.34440 * 113.07435 * 0.02562 * 5 4 3 7 7 N 1.32340 * 134.98286 * 179.97438 * 6 5 4 8 8 C 1.31466 * 121.77871 * 179.74859 * 7 6 5 9 9 C 1.40034 * 121.52259 * 0.55656 * 8 7 6 10 10 C 1.47667 * 120.50912 * 179.74086 * 9 8 7 11 11 O 1.21573 * 120.00469 * 179.71517 * 10 9 8 12 12 N 1.34777 * 119.99880 * 359.71646 * 10 9 8 13 13 C 1.39385 * 120.00254 * 185.11220 * 12 10 9 14 14 C 1.38621 * 119.58465 * 185.36030 * 13 12 10 15 15 C 1.40797 * 118.79798 * 179.73009 * 14 13 12 16 16 C 1.41542 * 120.99800 * 180.23081 * 15 14 13 17 17 H 1.08001 * 119.99914 * 153.74571 * 16 15 14 18 18 C 1.40028 * 120.00062 * 333.74500 * 16 15 14 19 19 N 1.30740 * 119.99864 * 350.16405 * 18 16 15 20 20 Si 1.86796 * 120.00162 * 170.16358 * 18 16 15 21 21 H 1.48496 * 109.47284 * 90.00081 * 20 18 16 22 22 H 1.48496 * 109.47344 * 210.00165 * 20 18 16 23 23 H 1.48505 * 109.47074 * 330.00331 * 20 18 16 24 24 C 1.41185 * 118.00474 * 0.24988 * 15 14 13 25 25 C 1.37580 * 119.02305 * 0.02562 * 24 15 14 26 26 N 1.32091 * 121.11037 * 0.02562 * 25 24 15 27 27 C 1.39925 * 118.99010 * 359.45984 * 9 8 7 28 28 C 1.38659 * 117.70520 * 0.25677 * 27 9 8 29 29 H 1.08995 * 109.47294 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46948 * 299.99891 * 1 2 3 31 31 H 1.09005 * 109.47462 * 59.99411 * 1 2 3 32 32 H 1.09003 * 109.46948 * 240.00109 * 2 1 3 33 33 H 1.08995 * 109.47611 * 120.00564 * 2 1 3 34 34 H 1.08002 * 119.24136 * 180.26982 * 8 7 6 35 35 H 0.97005 * 119.99684 * 5.11577 * 12 10 9 36 36 H 1.08007 * 120.60107 * 0.02562 * 14 13 12 37 37 H 0.96998 * 119.99885 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.48723 * 180.02562 * 24 15 14 39 39 H 1.07994 * 119.44866 * 179.97438 * 25 24 15 40 40 H 1.08001 * 121.14568 * 180.23118 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2963 2.1650 -1.0328 5 8 2.6876 3.2712 -0.7430 6 6 2.7593 3.4738 0.5842 7 7 3.1178 4.4858 1.3580 8 6 3.0823 4.4010 2.6694 9 6 2.6732 3.2284 3.3165 10 6 2.6473 3.1559 4.7911 11 8 2.2856 2.1350 5.3433 12 7 3.0248 4.2216 5.5249 13 6 3.1026 4.1197 6.9128 14 6 3.3827 5.2485 7.6672 15 6 3.4518 5.1279 9.0683 16 6 3.7298 6.2509 9.8838 17 1 3.3800 6.2763 10.9053 18 6 4.4583 7.3289 9.3662 19 7 5.0451 7.2227 8.2027 20 14 4.5918 8.9186 10.3380 21 1 5.7833 8.8595 11.2224 22 1 4.7276 10.0620 9.4004 23 1 3.3708 9.0978 11.1639 24 6 3.2359 3.8531 9.6354 25 6 2.9697 2.7893 8.8046 26 7 2.9144 2.9441 7.4939 27 6 2.2836 2.1284 2.5444 28 6 2.3299 2.2603 1.1648 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.3799 5.2538 3.2615 35 1 3.2421 5.0594 5.0871 36 1 3.5403 6.2041 7.1892 37 1 5.5495 7.9696 7.8440 38 1 3.2792 3.7151 10.7057 39 1 2.8038 1.8111 9.2310 40 1 1.9584 1.2083 3.0070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:39 Heat of formation + Delta-G solvation = 95.525888 kcal Electronic energy + Delta-G solvation = -27272.998876 eV Core-core repulsion = 23249.425891 eV Total energy + Delta-G solvation = -4023.572985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.02332 -40.50366 -39.15703 -37.74882 -35.91663 -34.54366 -33.92793 -32.84632 -31.72552 -31.35877 -30.59807 -28.76458 -26.15085 -25.96090 -24.70340 -24.26799 -22.29802 -21.97015 -21.16272 -20.28306 -18.59339 -18.29134 -18.06987 -17.92267 -16.92488 -16.22521 -15.68738 -15.28054 -14.92186 -14.84081 -14.51548 -14.28562 -14.26707 -13.85534 -13.79162 -13.65875 -13.44686 -13.20258 -12.92169 -12.67123 -12.42371 -12.15383 -12.06717 -11.51916 -11.45439 -11.23912 -11.22355 -10.98360 -10.43699 -10.26433 -10.10934 -9.92072 -9.62775 -9.59665 -9.47799 -9.41056 -8.08748 -7.87490 -7.17225 -6.83760 -4.70780 0.22419 0.25831 1.74347 1.95367 2.41861 2.72660 2.92946 2.98175 3.02115 3.18568 3.21012 3.45888 3.67007 3.72590 3.80320 4.04012 4.32814 4.41751 4.61193 4.62905 4.66796 4.79211 4.84914 4.92095 5.30153 5.42697 5.45674 5.54383 5.57365 5.59521 5.78381 5.83230 5.89606 6.43438 6.50940 6.70426 6.85134 7.03968 7.11912 7.25547 7.34300 7.61053 7.82240 7.85372 8.06444 8.29519 8.55465 8.65975 8.69311 9.54665 10.01936 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.002440 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.566313 B =11474.086000 C =12748.753785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.047 4.047 3 C 0.074 3.926 4 N -0.316 5.316 5 O 0.083 5.917 6 C 0.226 3.774 7 N -0.461 5.461 8 C 0.193 3.807 9 C -0.192 4.192 10 C 0.552 3.448 11 O -0.471 6.471 12 N -0.649 5.649 13 C 0.333 3.667 14 C -0.235 4.235 15 C 0.141 3.859 16 C -0.452 4.452 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.915 3.085 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.279 4.279 25 C 0.118 3.882 26 N -0.555 5.555 27 C 0.063 3.937 28 C -0.225 4.225 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.182 0.818 35 H 0.408 0.592 36 H 0.135 0.865 37 H 0.282 0.718 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.431 -6.210 -13.494 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 C -0.096 4.096 4 N -0.023 5.023 5 O 0.026 5.974 6 C 0.044 3.956 7 N -0.177 5.177 8 C 0.028 3.972 9 C -0.198 4.198 10 C 0.336 3.664 11 O -0.341 6.341 12 N -0.295 5.295 13 C 0.109 3.891 14 C -0.260 4.260 15 C 0.133 3.867 16 C -0.483 4.483 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.420 5.420 20 Si 0.739 3.261 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.303 4.303 25 C -0.036 4.036 26 N -0.274 5.274 27 C 0.034 3.966 28 C -0.231 4.231 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.199 0.801 35 H 0.244 0.756 36 H 0.152 0.848 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.143 0.857 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.485 -6.946 -15.661 17.710 hybrid contribution 0.365 1.327 1.798 2.264 sum -4.119 -5.620 -13.863 15.515 Atomic orbital electron populations 1.21756 0.93247 1.02911 1.02800 1.20071 0.96875 0.86814 1.04750 1.24326 1.00070 0.98530 0.86656 1.73485 1.13848 0.91832 1.23157 1.84894 1.67040 1.26012 1.19431 1.21746 0.96272 0.91283 0.86265 1.66427 1.17882 1.28435 1.04962 1.23194 0.89850 0.96524 0.87667 1.21201 1.06752 0.96057 0.95743 1.17755 0.79276 0.84516 0.84858 1.90880 1.42577 1.29160 1.71516 1.43255 1.66550 1.13987 1.05681 1.18101 0.97773 0.91391 0.81885 1.21676 1.12452 0.97134 0.94766 1.17591 0.86034 0.91736 0.91363 1.19590 1.29963 0.99621 0.99154 0.89977 1.25953 0.93190 1.00177 0.94987 1.69717 1.23299 1.32090 1.16893 0.86197 0.79824 0.80048 0.80037 1.19362 1.19984 1.18412 1.21949 1.15044 0.94050 0.99242 1.21744 0.96217 0.97378 0.88244 1.67147 1.24359 1.23621 1.12261 1.20945 0.87905 0.98526 0.89209 1.20866 1.10077 0.96521 0.95613 0.91016 0.91955 0.92215 0.89161 0.88703 0.80132 0.75611 0.84780 0.90671 0.87839 0.85745 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.15 0.37 -0.59 16 2 C -0.05 -0.34 6.55 -27.89 -0.18 -0.52 16 3 C 0.07 0.78 6.84 -79.98 -0.55 0.24 16 4 N -0.32 -3.85 11.94 34.92 0.42 -3.43 16 5 O 0.08 1.08 11.11 16.12 0.18 1.26 16 6 C 0.23 2.98 8.75 -16.20 -0.14 2.83 16 7 N -0.46 -6.04 10.36 -12.60 -0.13 -6.17 16 8 C 0.19 2.28 10.68 -17.04 -0.18 2.10 16 9 C -0.19 -2.55 5.90 -104.74 -0.62 -3.17 16 10 C 0.55 9.53 7.72 -12.41 -0.10 9.44 16 11 O -0.47 -9.84 14.71 5.30 0.08 -9.76 16 12 N -0.65 -11.58 5.33 -12.40 -0.07 -11.65 16 13 C 0.33 7.54 7.40 -154.77 -1.15 6.40 16 14 C -0.23 -5.61 8.60 -38.47 -0.33 -5.94 16 15 C 0.14 3.54 5.60 -106.55 -0.60 2.94 16 16 C -0.45 -11.12 9.14 -37.65 -0.34 -11.46 16 17 H 0.08 1.94 7.87 -52.49 -0.41 1.52 16 18 C 0.08 1.74 5.31 -17.35 -0.09 1.65 16 19 N -0.79 -18.62 10.70 55.55 0.59 -18.02 16 20 Si 0.91 17.31 29.57 -169.99 -5.03 12.28 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 24 C -0.28 -6.52 9.90 -38.70 -0.38 -6.90 16 25 C 0.12 2.69 11.15 -17.68 -0.20 2.50 16 26 N -0.55 -13.34 7.89 -12.54 -0.10 -13.44 16 27 C 0.06 0.76 9.75 -38.79 -0.38 0.38 16 28 C -0.23 -2.69 6.55 -105.22 -0.69 -3.38 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.18 1.63 6.40 -52.49 -0.34 1.30 16 35 H 0.41 5.76 6.75 -40.82 -0.28 5.48 16 36 H 0.13 3.16 6.11 -52.48 -0.32 2.84 16 37 H 0.28 6.00 8.29 -40.82 -0.34 5.66 16 38 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.13 2.45 8.06 -52.49 -0.42 2.03 16 40 H 0.16 1.76 7.74 -52.49 -0.41 1.35 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -30.66 352.67 -8.14 -38.80 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.85 Total: 8.31 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -5.56 Total: -3.50 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.72 Total: -52.71 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.26 Total: -8.50 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.66 -8.14 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.324 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds