Wall clock time and date at job start Tue Mar 31 2020 21:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50696 * 109.47215 * 2 1 4 4 N 1.30009 * 127.40358 * 269.95597 * 3 2 1 5 5 O 1.20859 * 113.52967 * 180.02562 * 4 3 2 6 6 C 1.34440 * 113.07435 * 0.02562 * 5 4 3 7 7 N 1.32340 * 134.98286 * 179.97438 * 6 5 4 8 8 C 1.31466 * 121.77871 * 179.74859 * 7 6 5 9 9 C 1.40034 * 121.52259 * 0.55656 * 8 7 6 10 10 C 1.47667 * 120.50912 * 179.74086 * 9 8 7 11 11 O 1.21573 * 120.00469 * 179.71517 * 10 9 8 12 12 N 1.34777 * 119.99880 * 359.71646 * 10 9 8 13 13 C 1.39385 * 120.00254 * 185.11220 * 12 10 9 14 14 C 1.38621 * 119.58465 * 185.36030 * 13 12 10 15 15 C 1.40797 * 118.79798 * 179.73009 * 14 13 12 16 16 C 1.41542 * 120.99800 * 180.23081 * 15 14 13 17 17 H 1.08001 * 119.99914 * 153.74571 * 16 15 14 18 18 C 1.40028 * 120.00062 * 333.74500 * 16 15 14 19 19 N 1.30740 * 119.99864 * 350.16405 * 18 16 15 20 20 Si 1.86796 * 120.00162 * 170.16358 * 18 16 15 21 21 H 1.48496 * 109.47284 * 90.00081 * 20 18 16 22 22 H 1.48496 * 109.47344 * 210.00165 * 20 18 16 23 23 H 1.48505 * 109.47074 * 330.00331 * 20 18 16 24 24 C 1.41185 * 118.00474 * 0.24988 * 15 14 13 25 25 C 1.37580 * 119.02305 * 0.02562 * 24 15 14 26 26 N 1.32091 * 121.11037 * 0.02562 * 25 24 15 27 27 C 1.39925 * 118.99010 * 359.45984 * 9 8 7 28 28 C 1.38659 * 117.70520 * 0.25677 * 27 9 8 29 29 H 1.08995 * 109.47294 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46948 * 299.99891 * 1 2 3 31 31 H 1.09005 * 109.47462 * 59.99411 * 1 2 3 32 32 H 1.09003 * 109.46948 * 240.00109 * 2 1 3 33 33 H 1.08995 * 109.47611 * 120.00564 * 2 1 3 34 34 H 1.08002 * 119.24136 * 180.26982 * 8 7 6 35 35 H 0.97005 * 119.99684 * 5.11577 * 12 10 9 36 36 H 1.08007 * 120.60107 * 0.02562 * 14 13 12 37 37 H 0.96998 * 119.99885 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.48723 * 180.02562 * 24 15 14 39 39 H 1.07994 * 119.44866 * 179.97438 * 25 24 15 40 40 H 1.08001 * 121.14568 * 180.23118 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2963 2.1650 -1.0328 5 8 2.6876 3.2712 -0.7430 6 6 2.7593 3.4738 0.5842 7 7 3.1178 4.4858 1.3580 8 6 3.0823 4.4010 2.6694 9 6 2.6732 3.2284 3.3165 10 6 2.6473 3.1559 4.7911 11 8 2.2856 2.1350 5.3433 12 7 3.0248 4.2216 5.5249 13 6 3.1026 4.1197 6.9128 14 6 3.3827 5.2485 7.6672 15 6 3.4518 5.1279 9.0683 16 6 3.7298 6.2509 9.8838 17 1 3.3800 6.2763 10.9053 18 6 4.4583 7.3289 9.3662 19 7 5.0451 7.2227 8.2027 20 14 4.5918 8.9186 10.3380 21 1 5.7833 8.8595 11.2224 22 1 4.7276 10.0620 9.4004 23 1 3.3708 9.0978 11.1639 24 6 3.2359 3.8531 9.6354 25 6 2.9697 2.7893 8.8046 26 7 2.9144 2.9441 7.4939 27 6 2.2836 2.1284 2.5444 28 6 2.3299 2.2603 1.1648 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.3799 5.2538 3.2615 35 1 3.2421 5.0594 5.0871 36 1 3.5403 6.2041 7.1892 37 1 5.5495 7.9696 7.8440 38 1 3.2792 3.7151 10.7057 39 1 2.8038 1.8111 9.2310 40 1 1.9584 1.2083 3.0070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531670949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:39 Heat of formation + Delta-G solvation = 76.853643 kcal Electronic energy + Delta-G solvation = -27273.808565 eV Core-core repulsion = 23249.425891 eV Total energy + Delta-G solvation = -4024.382674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.94859 -41.76572 -40.53958 -39.31606 -36.70682 -36.17963 -35.59361 -33.82197 -32.78019 -32.36202 -32.17626 -30.38366 -27.90886 -27.06378 -25.63544 -25.06504 -23.88646 -23.56685 -22.13299 -21.73870 -19.79438 -19.59383 -19.25461 -19.00176 -18.20787 -17.39749 -17.19120 -16.84647 -16.32989 -16.03452 -15.82358 -15.61201 -15.34276 -15.01551 -14.83233 -14.80051 -14.54776 -14.46128 -14.30123 -14.11944 -13.83965 -13.16972 -13.00884 -12.84274 -12.67890 -12.60452 -12.13221 -12.12402 -12.02102 -11.89465 -11.55800 -11.41893 -11.18136 -10.81703 -10.61105 -10.41943 -9.91704 -9.65434 -8.89333 -8.57312 -6.55576 -0.80168 -0.71114 0.77070 0.85801 0.98842 1.01855 1.44273 1.53267 1.57498 1.71535 1.87173 2.22409 2.42834 2.60853 2.80365 2.85537 3.07603 3.38484 3.44711 3.49405 3.75538 3.77375 4.08546 4.21122 4.26289 4.27710 4.41753 4.61508 4.76826 4.78648 4.81850 4.88317 4.94406 4.97193 5.03636 5.10011 5.26658 5.28989 5.48391 5.60415 5.93574 6.11413 6.14503 6.42289 6.55688 6.80160 6.86072 6.91757 7.12369 7.79496 8.30561 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.002440 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.566313 B =11474.086000 C =12748.753785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C 0.091 3.909 4 N -0.333 5.333 5 O 0.068 5.932 6 C 0.218 3.782 7 N -0.475 5.475 8 C 0.206 3.794 9 C -0.200 4.200 10 C 0.559 3.441 11 O -0.509 6.509 12 N -0.642 5.642 13 C 0.333 3.667 14 C -0.252 4.252 15 C 0.112 3.888 16 C -0.482 4.482 17 H 0.082 0.918 18 C 0.039 3.961 19 N -0.815 5.815 20 Si 0.986 3.014 21 H -0.265 1.265 22 H -0.264 1.264 23 H -0.260 1.260 24 C -0.294 4.294 25 C 0.114 3.886 26 N -0.576 5.576 27 C 0.076 3.924 28 C -0.231 4.231 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.206 0.794 35 H 0.423 0.577 36 H 0.132 0.868 37 H 0.292 0.708 38 H 0.116 0.884 39 H 0.152 0.848 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 -6.234 -14.092 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.079 4.079 4 N -0.043 5.043 5 O 0.015 5.985 6 C 0.036 3.964 7 N -0.192 5.192 8 C 0.041 3.959 9 C -0.206 4.206 10 C 0.345 3.655 11 O -0.382 6.382 12 N -0.290 5.290 13 C 0.107 3.893 14 C -0.277 4.277 15 C 0.103 3.897 16 C -0.512 4.512 17 H 0.100 0.900 18 C -0.178 4.178 19 N -0.440 5.440 20 Si 0.807 3.193 21 H -0.190 1.190 22 H -0.189 1.189 23 H -0.184 1.184 24 C -0.317 4.317 25 C -0.040 4.040 26 N -0.296 5.296 27 C 0.048 3.952 28 C -0.236 4.236 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.223 0.777 35 H 0.263 0.737 36 H 0.150 0.850 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.169 0.831 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.536 -6.944 -16.303 18.291 hybrid contribution 0.371 1.247 1.905 2.307 sum -4.166 -5.698 -14.397 16.034 Atomic orbital electron populations 1.21755 0.92574 1.04086 1.02076 1.20329 0.97295 0.84746 1.06337 1.24908 0.98065 0.99471 0.85496 1.73502 1.15227 0.91873 1.23661 1.84891 1.67571 1.26647 1.19388 1.22020 0.95937 0.91794 0.86603 1.66503 1.18723 1.28708 1.05219 1.23517 0.88367 0.96630 0.87422 1.20797 1.09180 0.97459 0.93186 1.18142 0.77740 0.83463 0.86150 1.90856 1.44267 1.30426 1.72670 1.43206 1.66395 1.15260 1.04109 1.18298 0.96484 0.90743 0.83727 1.21669 1.13820 0.97487 0.94743 1.18021 0.86635 0.92702 0.92321 1.19856 1.31196 1.00726 0.99470 0.89954 1.26748 0.92271 1.02827 0.95961 1.69746 1.23101 1.33334 1.17868 0.85130 0.79628 0.75944 0.78620 1.19009 1.18865 1.18385 1.22131 1.15651 0.93887 1.00061 1.22200 0.95241 0.98441 0.88091 1.67282 1.25241 1.24198 1.12867 1.21066 0.86421 0.98524 0.89169 1.20958 1.10367 0.96560 0.95735 0.88929 0.92719 0.92901 0.87680 0.87017 0.77733 0.73723 0.85000 0.89700 0.86617 0.83074 0.80879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.89 71.98 0.71 -0.86 16 2 C -0.05 -0.58 6.55 29.84 0.20 -0.38 16 3 C 0.09 1.77 6.84 45.02 0.31 2.08 16 4 N -0.33 -7.75 11.94 -43.53 -0.52 -8.27 16 5 O 0.07 1.73 11.11 67.86 0.75 2.49 16 6 C 0.22 5.55 8.75 85.35 0.75 6.30 16 7 N -0.47 -11.94 10.36 -307.28 -3.18 -15.12 16 8 C 0.21 4.60 10.68 85.18 0.91 5.51 16 9 C -0.20 -5.10 5.90 -19.94 -0.12 -5.22 16 10 C 0.56 18.96 7.72 86.73 0.67 19.63 16 11 O -0.51 -21.15 14.71 -3.95 -0.06 -21.21 16 12 N -0.64 -22.70 5.33 -311.42 -1.66 -24.36 16 13 C 0.33 15.19 7.40 132.78 0.98 16.17 16 14 C -0.25 -12.21 8.60 22.99 0.20 -12.02 16 15 C 0.11 5.69 5.60 -21.12 -0.12 5.57 16 16 C -0.48 -23.98 9.14 23.52 0.21 -23.76 16 17 H 0.08 3.94 7.87 -2.91 -0.02 3.91 16 18 C 0.04 1.76 5.31 85.29 0.45 2.22 16 19 N -0.81 -38.01 10.70 21.84 0.23 -37.78 16 20 Si 0.99 34.80 29.57 68.60 2.03 36.83 16 21 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 22 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 23 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 24 C -0.29 -13.88 9.90 22.84 0.23 -13.66 16 25 C 0.11 5.19 11.15 84.50 0.94 6.13 16 26 N -0.58 -27.80 7.89 -193.58 -1.53 -29.32 16 27 C 0.08 1.73 9.75 22.78 0.22 1.96 16 28 C -0.23 -5.18 6.55 -20.25 -0.13 -5.32 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.21 3.35 6.40 -2.91 -0.02 3.33 16 35 H 0.42 11.65 6.75 -92.70 -0.63 11.03 16 36 H 0.13 6.32 6.11 -2.91 -0.02 6.30 16 37 H 0.29 12.18 8.29 -92.71 -0.77 11.41 16 38 H 0.12 5.00 8.06 -2.91 -0.02 4.97 16 39 H 0.15 5.85 8.06 -2.91 -0.02 5.83 16 40 H 0.17 3.49 7.74 -2.91 -0.02 3.46 16 Total: -1.00 -66.26 352.67 2.98 -63.28 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.50 Total: 29.10 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 6.41 Total: 4.35 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -6.66 Total: -114.85 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.70 Total: -18.72 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Total: -66.26 2.98 -63.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.138 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds