Wall clock time and date at job start Tue Mar 31 2020 21:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46611 * 2 1 4 4 C 1.53000 * 109.46611 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47528 * 304.99452 * 4 3 2 6 6 C 1.50700 * 109.47181 * 184.99686 * 4 3 2 7 7 O 1.21278 * 120.00331 * 240.00392 * 6 4 3 8 8 N 1.34779 * 119.99784 * 59.99752 * 6 4 3 9 9 C 1.46498 * 120.00322 * 180.02562 * 8 6 4 10 10 C 1.50696 * 109.47476 * 180.02562 * 9 8 6 11 11 O 1.21291 * 119.99815 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99686 * 180.02562 * 10 9 8 13 13 C 1.37105 * 119.99221 * 180.02562 * 12 10 9 14 14 H 1.07994 * 120.00180 * 359.97438 * 13 12 10 15 15 C 1.38951 * 119.99299 * 179.97438 * 13 12 10 16 16 N 1.31404 * 120.00533 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99541 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47643 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47362 * 120.00394 * 17 15 13 20 20 H 1.48502 * 109.47081 * 239.99720 * 17 15 13 21 21 C 1.50696 * 109.47417 * 65.00096 * 4 3 2 22 22 C 1.38247 * 119.98658 * 240.00106 * 21 4 3 23 23 C 1.38216 * 120.01497 * 179.97438 * 22 21 4 24 24 C 1.38357 * 119.98603 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 120.01134 * 180.02562 * 24 23 22 26 26 C 1.38347 * 119.97107 * 0.28224 * 24 23 22 27 27 C 1.38219 * 119.98930 * 359.40143 * 26 24 23 28 28 H 1.09002 * 109.47152 * 59.99987 * 1 2 3 29 29 H 1.08995 * 109.47067 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47484 * 300.00257 * 1 2 3 31 31 H 1.08991 * 109.47244 * 240.00183 * 2 1 3 32 32 H 1.08997 * 109.47254 * 119.99087 * 2 1 3 33 33 H 1.08991 * 109.47167 * 60.00135 * 3 2 1 34 34 H 1.08997 * 109.47025 * 299.99238 * 3 2 1 35 35 H 0.97000 * 119.99763 * 0.02562 * 8 6 4 36 36 H 1.09006 * 109.47127 * 300.00206 * 9 8 6 37 37 H 1.09001 * 109.47076 * 59.99906 * 9 8 6 38 38 H 0.96989 * 120.00644 * 359.97438 * 12 10 9 39 39 H 0.97003 * 120.00320 * 180.02562 * 16 15 13 40 40 H 1.08003 * 119.99321 * 359.97438 * 22 21 4 41 41 H 1.08002 * 120.00776 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.00661 * 179.71600 * 26 24 23 43 43 H 1.07997 * 119.99445 * 180.32231 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8532 0.8410 6 6 4.0723 2.8580 0.1231 7 8 4.7691 3.3326 -0.7487 8 7 3.7471 3.5965 1.2026 9 6 4.2350 4.9727 1.3228 10 6 3.7337 5.5727 2.6111 11 8 3.0371 4.9157 3.3554 12 7 4.0588 6.8399 2.9355 13 6 3.6031 7.3855 4.1079 14 1 2.9835 6.8002 4.7710 15 6 3.9387 8.6917 4.4427 16 7 4.6922 9.4041 3.6356 17 14 3.3173 9.4355 6.0396 18 1 2.4930 8.4350 6.7640 19 1 4.4730 9.8304 6.8844 20 1 2.4916 10.6327 5.7397 21 6 4.0718 0.8424 -1.2886 22 6 4.8666 -0.2884 -1.2604 23 6 5.3267 -0.8397 -2.4413 24 6 4.9922 -0.2593 -3.6519 25 17 5.5693 -0.9516 -5.1356 26 6 4.2021 0.8760 -3.6792 27 6 3.7371 1.4226 -2.4979 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.1900 3.2168 1.9000 36 1 5.3250 4.9731 1.3221 37 1 3.8709 5.5620 0.4812 38 1 4.6156 7.3654 2.3402 39 1 4.9267 10.3158 3.8695 40 1 5.1280 -0.7411 -0.3153 41 1 5.9473 -1.7233 -2.4191 42 1 3.9444 1.3321 -4.6236 43 1 3.1160 2.3059 -2.5194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597652248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:37 Heat of formation + Delta-G solvation = -79.031148 kcal Electronic energy + Delta-G solvation = -26042.788216 eV Core-core repulsion = 22112.753364 eV Total energy + Delta-G solvation = -3930.034852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.54083 -39.05130 -38.11423 -36.76529 -35.72153 -34.50286 -33.70603 -32.24213 -31.41863 -31.25761 -29.20909 -27.45249 -25.12487 -24.30167 -23.15790 -22.18617 -21.16451 -19.91077 -19.56615 -18.16802 -17.43376 -17.17115 -16.24497 -15.83102 -15.43309 -15.21194 -15.13060 -15.00636 -14.53322 -14.19208 -14.05368 -13.85142 -13.65374 -13.59480 -13.37877 -13.30017 -12.71838 -12.30511 -12.19101 -11.99936 -11.84113 -11.70971 -11.65476 -11.41239 -11.29749 -11.19153 -11.15712 -10.96378 -10.78398 -10.43931 -10.35878 -9.70152 -9.68427 -9.17357 -8.85243 -8.75158 -8.66652 -8.14101 -6.55083 -3.97252 0.93630 1.14336 1.93182 2.72644 3.07548 3.17270 3.21198 3.27615 3.57590 3.69719 4.08254 4.30858 4.46631 4.67345 4.70928 4.76731 4.82892 4.88753 5.05150 5.08733 5.13496 5.16193 5.27088 5.38586 5.48037 5.55021 5.63047 5.68146 5.76822 5.86358 5.89427 5.91113 5.98196 6.02354 6.03939 6.05406 6.13258 6.36891 6.59884 6.61920 7.42758 7.73414 7.88352 8.36302 8.41806 9.00941 9.35327 9.82782 10.61776 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.002133 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.788487 B =13121.752324 C =14210.540084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.069 4.069 5 H 0.108 0.892 6 C 0.515 3.485 7 O -0.540 6.540 8 N -0.705 5.705 9 C 0.109 3.891 10 C 0.427 3.573 11 O -0.598 6.598 12 N -0.549 5.549 13 C -0.305 4.305 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.894 5.894 17 Si 0.933 3.067 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.052 4.052 22 C -0.100 4.100 23 C -0.113 4.113 24 C -0.036 4.036 25 Cl -0.079 7.079 26 C -0.111 4.111 27 C -0.071 4.071 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.411 0.589 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -19.641 -12.494 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.090 4.090 5 H 0.126 0.874 6 C 0.300 3.700 7 O -0.417 6.417 8 N -0.359 5.359 9 C -0.019 4.019 10 C 0.213 3.787 11 O -0.484 6.484 12 N -0.183 5.183 13 C -0.434 4.434 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.053 4.053 22 C -0.118 4.118 23 C -0.132 4.132 24 C -0.062 4.062 25 Cl -0.050 7.050 26 C -0.130 4.130 27 C -0.089 4.089 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.249 0.751 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.207 -19.550 -12.711 23.424 hybrid contribution 0.035 0.693 0.610 0.924 sum -2.173 -18.857 -12.101 22.511 Atomic orbital electron populations 1.21767 0.95607 1.01600 1.02084 1.21526 0.96059 0.95967 1.02369 1.21694 0.91314 0.98258 1.03672 1.20383 0.97591 0.94004 0.97060 0.87447 1.20315 0.80621 0.87304 0.81767 1.90719 1.37970 1.72775 1.40216 1.45701 1.53248 1.13728 1.23211 1.20959 0.99936 0.82978 0.98024 1.19736 0.86699 0.83827 0.88427 1.90494 1.43131 1.61411 1.53401 1.41813 1.45018 1.10719 1.20795 1.19778 1.29728 0.96466 0.97453 0.87598 1.25337 0.96566 0.96299 0.99557 1.69618 1.35969 1.10690 1.37122 0.85756 0.78553 0.78918 0.80852 1.19118 1.20593 1.20597 1.19389 0.97053 0.94939 0.93879 1.20974 0.97165 0.95775 0.97932 1.20948 1.00908 1.00739 0.90620 1.20912 1.01107 0.97041 0.87175 1.98362 1.87944 1.84232 1.34477 1.21006 0.97868 0.94814 0.99291 1.20895 0.98565 0.98520 0.90929 0.92742 0.92781 0.92435 0.91702 0.91691 0.90327 0.90982 0.75081 0.89867 0.89846 0.77038 0.91600 0.85122 0.85081 0.85077 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -0.95 5.75 -26.73 -0.15 -1.10 16 3 C -0.11 -1.02 4.52 -26.73 -0.12 -1.14 16 4 C -0.07 -0.72 2.38 -92.93 -0.22 -0.94 16 5 H 0.11 0.95 7.88 -51.93 -0.41 0.54 16 6 C 0.51 7.40 7.02 -10.98 -0.08 7.32 16 7 O -0.54 -9.44 15.11 5.56 0.08 -9.35 16 8 N -0.70 -10.88 5.39 -61.47 -0.33 -11.21 16 9 C 0.11 1.92 6.15 -5.20 -0.03 1.89 16 10 C 0.43 9.50 7.85 -10.99 -0.09 9.42 16 11 O -0.60 -14.80 15.24 5.55 0.08 -14.71 16 12 N -0.55 -13.34 5.29 -10.96 -0.06 -13.40 16 13 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 14 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 15 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 16 N -0.89 -23.60 13.05 55.50 0.72 -22.88 16 17 Si 0.93 20.25 29.55 -169.99 -5.02 15.23 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 C -0.05 -0.56 3.38 -104.62 -0.35 -0.91 16 22 C -0.10 -0.95 9.67 -39.59 -0.38 -1.33 16 23 C -0.11 -1.07 9.83 -39.55 -0.39 -1.46 16 24 C -0.04 -0.37 6.32 -39.50 -0.25 -0.62 16 25 Cl -0.08 -0.76 28.96 -51.86 -1.50 -2.26 16 26 C -0.11 -1.17 9.83 -39.55 -0.39 -1.56 16 27 C -0.07 -0.79 7.87 -39.59 -0.31 -1.10 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.75 7.43 -51.93 -0.39 0.36 16 34 H 0.07 0.68 7.22 -51.93 -0.38 0.30 16 35 H 0.41 6.19 6.80 -40.82 -0.28 5.91 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.40 9.28 7.90 -40.82 -0.32 8.96 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.13 0.96 7.95 -52.48 -0.42 0.54 16 41 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.13 1.44 7.48 -52.49 -0.39 1.05 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -30.51 380.04 -8.79 -39.30 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -5.86 Total: 13.61 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.64 Total: -0.06 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.34 Total: -47.49 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.17 Total: -24.06 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.51 -8.79 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597652248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.729 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds