Wall clock time and date at job start Tue Mar 31 2020 21:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00433 * 2 1 4 4 N 1.46497 * 109.46843 * 125.00393 * 3 2 1 5 5 C 1.46493 * 120.00235 * 90.00710 * 4 3 2 6 6 C 1.50706 * 109.47128 * 269.99530 * 5 4 3 7 7 H 1.08000 * 119.99302 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72498 * 6 5 4 9 9 N 1.31514 * 120.00481 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99745 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00365 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00213 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00116 * 10 8 6 14 14 C 1.34783 * 119.99658 * 269.99838 * 4 3 2 15 15 O 1.21583 * 119.99534 * 180.02562 * 14 4 3 16 16 N 1.34776 * 120.00261 * 0.02562 * 14 4 3 17 17 C 1.39075 * 119.99760 * 179.97438 * 16 14 4 18 18 N 1.29890 * 125.65875 * 0.02562 * 17 16 14 19 19 N 1.26247 * 117.66249 * 179.97438 * 18 17 16 20 20 C 1.29503 * 116.58098 * 359.97438 * 19 18 17 21 21 C 1.50704 * 126.14473 * 180.02562 * 20 19 18 22 22 H 1.08991 * 109.82747 * 195.67719 * 21 20 19 23 23 C 1.54387 * 109.82792 * 74.78846 * 21 20 19 24 24 C 1.55456 * 102.18381 * 219.18335 * 23 21 20 25 25 C 1.54940 * 100.98906 * 34.04077 * 24 23 21 26 26 O 1.43238 * 109.83093 * 316.56487 * 21 20 19 27 27 S 1.71314 * 125.65082 * 179.71851 * 17 16 14 28 28 H 1.08000 * 120.00356 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00006 * 359.97438 * 1 2 3 30 30 H 1.08010 * 119.99751 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46634 * 5.00316 * 3 2 1 32 32 H 1.08997 * 109.47087 * 245.00278 * 3 2 1 33 33 H 1.09001 * 109.47786 * 149.99803 * 5 4 3 34 34 H 1.08998 * 109.47558 * 29.99666 * 5 4 3 35 35 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 36 36 H 0.96995 * 119.99637 * 359.97438 * 16 14 4 37 37 H 1.09000 * 110.84864 * 337.32043 * 23 21 20 38 38 H 1.09003 * 110.84824 * 100.94328 * 23 21 20 39 39 H 1.08993 * 111.05838 * 276.12345 * 24 23 21 40 40 H 1.08999 * 111.17924 * 152.01181 * 24 23 21 41 41 H 1.09005 * 110.31209 * 204.68544 * 25 24 23 42 42 H 1.09009 * 110.31243 * 82.52244 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3317 1.1314 5 6 4.3590 0.8255 0.9693 6 6 4.3926 -0.6441 1.3016 7 1 3.4876 -1.1501 1.6038 8 6 5.5775 -1.3436 1.2150 9 7 5.6067 -2.6262 1.5045 10 14 7.1412 -0.4699 0.6850 11 1 7.8359 0.0707 1.8810 12 1 8.0328 -1.4307 -0.0131 13 1 6.7982 0.6447 -0.2343 14 6 2.5938 1.8221 2.3214 15 8 3.3660 1.8446 3.2602 16 7 1.3378 2.2875 2.4706 17 6 0.9249 2.7930 3.6987 18 7 1.6550 2.8693 4.7702 19 7 1.1251 3.3573 5.8070 20 6 -0.1078 3.7396 5.7025 21 6 -0.9454 4.3487 6.7973 22 1 -1.9987 4.3149 6.5192 23 6 -0.5131 5.8117 7.0349 24 6 -0.5970 5.9313 8.5826 25 6 -0.1772 4.5031 9.0124 26 8 -0.7426 3.6315 8.0205 27 16 -0.6288 3.4251 4.0468 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6213 1.4025 -0.9314 33 1 5.0285 1.3648 1.6393 34 1 4.6810 0.9723 -0.0616 35 1 6.4403 -3.1183 1.4432 36 1 0.7219 2.2698 1.7215 37 1 0.5071 5.9759 6.6881 38 1 -1.2040 6.5035 6.5530 39 1 -1.6143 6.1551 8.9036 40 1 0.1038 6.6767 8.9585 41 1 -0.5830 4.2696 9.9968 42 1 0.9092 4.4141 9.0195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603165920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:30 Heat of formation + Delta-G solvation = 42.319753 kcal Electronic energy + Delta-G solvation = -26639.082823 eV Core-core repulsion = 22748.646598 eV Total energy + Delta-G solvation = -3890.436225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.28063 -39.99520 -39.39676 -36.11683 -35.08803 -33.12054 -32.57219 -32.23033 -31.61075 -29.03961 -28.04851 -26.23155 -25.50861 -23.57493 -22.51165 -22.05760 -20.97290 -20.02505 -19.74469 -18.56312 -17.90880 -17.22703 -16.88617 -16.85215 -16.11332 -15.89304 -15.27576 -14.97007 -14.80631 -14.45396 -14.00938 -13.85716 -13.62930 -13.50795 -13.31532 -13.21895 -12.48270 -12.32158 -12.22119 -12.13142 -11.64632 -11.57570 -11.31618 -11.30215 -11.04766 -10.87915 -10.64825 -10.53957 -10.18472 -10.15613 -9.97463 -9.65048 -9.60721 -9.40705 -9.21541 -8.64282 -8.59789 -7.89980 -6.09578 -4.08956 0.44232 0.54114 1.13603 2.35163 2.68127 2.72324 3.28917 3.34216 3.37831 3.61244 3.68338 3.86736 4.06949 4.23437 4.38499 4.46224 4.65266 4.71703 4.90640 4.94053 5.00618 5.13008 5.22473 5.32120 5.38656 5.43951 5.52193 5.52493 5.55375 5.68573 5.80492 6.12939 6.14611 6.26001 6.63146 6.72829 6.85173 6.89846 7.01607 7.21350 7.56703 8.13393 8.44120 8.76429 8.92383 8.97326 9.49623 11.03549 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.002875 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.665473 B = 9735.602218 C =10756.628112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C 0.137 3.863 4 N -0.595 5.595 5 C 0.230 3.770 6 C -0.530 4.530 7 H 0.077 0.923 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.694 3.306 15 O -0.513 6.513 16 N -0.637 5.637 17 C 0.271 3.729 18 N -0.270 5.270 19 N -0.200 5.200 20 C -0.029 4.029 21 C 0.174 3.826 22 H 0.104 0.896 23 C -0.144 4.144 24 C -0.154 4.154 25 C 0.048 3.952 26 O -0.358 6.358 27 S 0.091 5.909 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.415 0.585 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.698 18.430 3.934 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.169 4.169 3 C 0.013 3.987 4 N -0.330 5.330 5 C 0.110 3.890 6 C -0.569 4.569 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.393 3.607 15 O -0.382 6.382 16 N -0.293 5.293 17 C -0.100 4.100 18 N -0.115 5.115 19 N -0.037 5.037 20 C -0.312 4.312 21 C 0.112 3.888 22 H 0.122 0.878 23 C -0.183 4.183 24 C -0.191 4.191 25 C -0.028 4.028 26 O -0.276 6.276 27 S 0.329 5.671 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.148 0.852 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.254 0.746 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.561 17.922 4.672 25.523 hybrid contribution 0.591 0.137 -0.895 1.081 sum -16.970 18.060 3.778 25.068 Atomic orbital electron populations 1.23735 0.95707 1.01426 1.03780 1.23714 0.95917 1.00574 0.96723 1.20628 0.92263 0.94315 0.91514 1.47277 1.14943 1.63316 1.07492 1.19732 0.76457 0.95761 0.97060 1.21323 0.97146 0.91811 1.46583 0.90506 1.24836 0.98610 0.94732 0.94705 1.69887 1.27242 1.07687 1.48545 0.86877 0.83842 0.79682 0.79411 1.19821 1.21090 1.19066 1.15917 0.80725 0.79419 0.84607 1.91076 1.51084 1.58169 1.37863 1.42553 1.15066 1.63070 1.08619 1.25728 0.93165 0.98760 0.92397 1.71664 1.27190 1.18803 0.93810 1.71349 1.06164 1.07575 1.18583 1.30129 0.95920 1.08859 0.96339 1.20969 0.96045 0.90061 0.81760 0.87799 1.23241 1.03839 0.94359 0.96899 1.23304 1.02954 0.98151 0.94725 1.23486 0.99113 0.88110 0.92110 1.88538 1.82946 1.36218 1.19887 1.84462 1.12397 1.59916 1.10280 0.88305 0.89386 0.85157 0.92055 0.88662 0.94125 0.94635 0.92515 0.74568 0.89537 0.89115 0.90059 0.89424 0.89228 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.51 14.32 29.02 0.42 -2.09 16 2 C -0.15 -2.26 9.85 -36.02 -0.35 -2.61 16 3 C 0.14 1.98 5.65 -5.19 -0.03 1.95 16 4 N -0.59 -11.90 2.44 -182.19 -0.44 -12.34 16 5 C 0.23 5.47 4.27 -5.19 -0.02 5.45 16 6 C -0.53 -14.89 9.83 -34.44 -0.34 -15.23 16 7 H 0.08 2.37 7.70 -52.49 -0.40 1.97 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 10 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.02 6.53 56.52 0.37 -5.65 16 14 C 0.69 14.78 8.24 -86.91 -0.72 14.06 16 15 O -0.51 -13.55 14.60 5.29 0.08 -13.47 16 16 N -0.64 -10.47 5.27 -17.32 -0.09 -10.56 16 17 C 0.27 4.56 8.14 -87.06 -0.71 3.85 16 18 N -0.27 -5.52 9.73 29.97 0.29 -5.23 16 19 N -0.20 -3.59 11.65 33.58 0.39 -3.20 16 20 C -0.03 -0.39 6.55 -13.26 -0.09 -0.48 16 21 C 0.17 1.73 4.08 -27.15 -0.11 1.62 16 22 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 23 C -0.14 -1.07 6.55 -24.70 -0.16 -1.23 16 24 C -0.15 -0.94 7.16 -24.40 -0.17 -1.12 16 25 C 0.05 0.42 7.78 38.18 0.30 0.72 16 26 O -0.36 -4.30 11.00 -35.23 -0.39 -4.69 16 27 S 0.09 1.05 23.31 -107.50 -2.51 -1.46 16 28 H 0.10 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.09 0.81 7.84 -52.49 -0.41 0.40 16 30 H 0.13 2.41 7.59 -52.48 -0.40 2.01 16 31 H 0.06 0.66 6.01 -51.93 -0.31 0.35 16 32 H 0.10 1.26 7.89 -51.93 -0.41 0.85 16 33 H 0.04 1.05 6.86 -51.93 -0.36 0.69 16 34 H 0.04 0.78 6.93 -51.93 -0.36 0.42 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.42 5.12 6.55 -40.82 -0.27 4.86 16 37 H 0.09 0.78 7.84 -51.93 -0.41 0.37 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -37.74 368.52 -8.55 -46.29 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.45 Total: 2.20 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -2.09 Total: 6.92 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.92 Total: -58.07 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.31 Total: -18.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.51 Total: -1.46 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.74 -8.55 -46.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603165920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.614 kcal (2) G-P(sol) polarization free energy of solvation -37.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds