Wall clock time and date at job start Tue Mar 31 2020 21:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00433 * 2 1 4 4 N 1.46497 * 109.46843 * 125.00393 * 3 2 1 5 5 C 1.46493 * 120.00235 * 90.00710 * 4 3 2 6 6 C 1.50706 * 109.47128 * 269.99530 * 5 4 3 7 7 H 1.08000 * 119.99302 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72498 * 6 5 4 9 9 N 1.31514 * 120.00481 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99745 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00365 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00213 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00116 * 10 8 6 14 14 C 1.34783 * 119.99658 * 269.99838 * 4 3 2 15 15 O 1.21583 * 119.99534 * 180.02562 * 14 4 3 16 16 N 1.34776 * 120.00261 * 0.02562 * 14 4 3 17 17 C 1.39075 * 119.99760 * 179.97438 * 16 14 4 18 18 N 1.29890 * 125.65875 * 0.02562 * 17 16 14 19 19 N 1.26247 * 117.66249 * 179.97438 * 18 17 16 20 20 C 1.29503 * 116.58098 * 359.97438 * 19 18 17 21 21 C 1.50704 * 126.14473 * 180.02562 * 20 19 18 22 22 H 1.08991 * 109.82747 * 195.67719 * 21 20 19 23 23 C 1.54387 * 109.82792 * 74.78846 * 21 20 19 24 24 C 1.55456 * 102.18381 * 219.18335 * 23 21 20 25 25 C 1.54940 * 100.98906 * 34.04077 * 24 23 21 26 26 O 1.43238 * 109.83093 * 316.56487 * 21 20 19 27 27 S 1.71314 * 125.65082 * 179.71851 * 17 16 14 28 28 H 1.08000 * 120.00356 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00006 * 359.97438 * 1 2 3 30 30 H 1.08010 * 119.99751 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46634 * 5.00316 * 3 2 1 32 32 H 1.08997 * 109.47087 * 245.00278 * 3 2 1 33 33 H 1.09001 * 109.47786 * 149.99803 * 5 4 3 34 34 H 1.08998 * 109.47558 * 29.99666 * 5 4 3 35 35 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 36 36 H 0.96995 * 119.99637 * 359.97438 * 16 14 4 37 37 H 1.09000 * 110.84864 * 337.32043 * 23 21 20 38 38 H 1.09003 * 110.84824 * 100.94328 * 23 21 20 39 39 H 1.08993 * 111.05838 * 276.12345 * 24 23 21 40 40 H 1.08999 * 111.17924 * 152.01181 * 24 23 21 41 41 H 1.09005 * 110.31209 * 204.68544 * 25 24 23 42 42 H 1.09009 * 110.31243 * 82.52244 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3317 1.1314 5 6 4.3590 0.8255 0.9693 6 6 4.3926 -0.6441 1.3016 7 1 3.4876 -1.1501 1.6038 8 6 5.5775 -1.3436 1.2150 9 7 5.6067 -2.6262 1.5045 10 14 7.1412 -0.4699 0.6850 11 1 7.8359 0.0707 1.8810 12 1 8.0328 -1.4307 -0.0131 13 1 6.7982 0.6447 -0.2343 14 6 2.5938 1.8221 2.3214 15 8 3.3660 1.8446 3.2602 16 7 1.3378 2.2875 2.4706 17 6 0.9249 2.7930 3.6987 18 7 1.6550 2.8693 4.7702 19 7 1.1251 3.3573 5.8070 20 6 -0.1078 3.7396 5.7025 21 6 -0.9454 4.3487 6.7973 22 1 -1.9987 4.3149 6.5192 23 6 -0.5131 5.8117 7.0349 24 6 -0.5970 5.9313 8.5826 25 6 -0.1772 4.5031 9.0124 26 8 -0.7426 3.6315 8.0205 27 16 -0.6288 3.4251 4.0468 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6213 1.4025 -0.9314 33 1 5.0285 1.3648 1.6393 34 1 4.6810 0.9723 -0.0616 35 1 6.4403 -3.1183 1.4432 36 1 0.7219 2.2698 1.7215 37 1 0.5071 5.9759 6.6881 38 1 -1.2040 6.5035 6.5530 39 1 -1.6143 6.1551 8.9036 40 1 0.1038 6.6767 8.9585 41 1 -0.5830 4.2696 9.9968 42 1 0.9092 4.4141 9.0195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603165920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:29 Heat of formation + Delta-G solvation = 13.805443 kcal Electronic energy + Delta-G solvation = -26640.319296 eV Core-core repulsion = 22748.646598 eV Total energy + Delta-G solvation = -3891.672698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.52381 -41.37689 -40.25450 -37.56374 -36.57609 -34.93391 -33.88975 -33.30511 -32.56494 -30.51316 -29.47519 -27.39413 -26.76916 -25.01795 -23.83017 -22.68097 -22.31300 -21.20984 -20.93997 -19.89012 -19.14860 -19.03027 -18.39585 -17.62731 -17.31845 -16.96336 -16.73425 -16.25269 -16.06739 -15.98210 -15.41141 -15.12346 -14.74750 -14.52798 -14.41493 -14.38266 -14.10024 -13.83507 -13.47923 -13.11889 -12.76824 -12.67844 -12.52999 -12.39715 -12.34595 -12.16177 -11.96009 -11.90339 -11.76368 -11.62520 -11.45308 -10.97881 -10.82211 -10.77770 -10.55787 -10.37442 -10.00317 -9.49586 -8.32687 -6.37194 -0.65932 -0.55977 0.02882 1.15799 1.32785 1.38137 1.44551 1.45613 1.50086 2.13532 2.31413 2.64613 2.91967 3.01868 3.08976 3.54672 3.73017 3.85474 3.90836 3.92775 4.03999 4.15695 4.35440 4.44606 4.53677 4.63869 4.67274 4.81008 4.82437 4.85274 4.90653 4.92608 5.01097 5.09155 5.26093 5.37428 5.42390 5.57397 5.71730 5.84930 5.92084 6.24242 6.64312 6.67830 7.21490 7.36020 7.66852 8.84309 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.002875 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.665473 B = 9735.602218 C =10756.628112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.189 4.189 3 C 0.133 3.867 4 N -0.598 5.598 5 C 0.238 3.762 6 C -0.529 4.529 7 H 0.030 0.970 8 C 0.009 3.991 9 N -0.948 5.948 10 Si 0.946 3.054 11 H -0.282 1.282 12 H -0.276 1.276 13 H -0.230 1.230 14 C 0.692 3.308 15 O -0.578 6.578 16 N -0.621 5.621 17 C 0.226 3.774 18 N -0.330 5.330 19 N -0.251 5.251 20 C -0.027 4.027 21 C 0.163 3.837 22 H 0.141 0.859 23 C -0.141 4.141 24 C -0.141 4.141 25 C 0.037 3.963 26 O -0.388 6.388 27 S 0.221 5.779 28 H 0.101 0.899 29 H 0.132 0.868 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.020 0.980 34 H 0.065 0.935 35 H 0.267 0.733 36 H 0.435 0.565 37 H 0.063 0.937 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.133 21.978 2.591 31.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.209 4.209 3 C 0.012 3.988 4 N -0.332 5.332 5 C 0.116 3.884 6 C -0.568 4.568 7 H 0.048 0.952 8 C -0.188 4.188 9 N -0.588 5.588 10 Si 0.769 3.231 11 H -0.208 1.208 12 H -0.202 1.202 13 H -0.153 1.153 14 C 0.391 3.609 15 O -0.452 6.452 16 N -0.279 5.279 17 C -0.145 4.145 18 N -0.174 5.174 19 N -0.087 5.087 20 C -0.311 4.311 21 C 0.101 3.899 22 H 0.159 0.841 23 C -0.180 4.180 24 C -0.178 4.178 25 C -0.039 4.039 26 O -0.306 6.306 27 S 0.461 5.539 28 H 0.119 0.881 29 H 0.150 0.850 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.278 0.722 37 H 0.082 0.918 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.095 21.503 3.282 30.301 hybrid contribution 1.344 -0.971 -0.360 1.696 sum -19.751 20.533 2.922 28.640 Atomic orbital electron populations 1.24064 0.94433 1.03624 0.98740 1.23392 0.97056 0.99010 1.01444 1.20987 0.92307 0.95494 0.90021 1.47221 1.14658 1.62496 1.08853 1.19409 0.78860 0.92413 0.97702 1.21551 0.95510 0.94136 1.45609 0.95176 1.25840 1.02677 0.95424 0.94905 1.70054 1.28375 1.09723 1.50668 0.85750 0.78661 0.79446 0.79267 1.20794 1.20172 1.15294 1.16133 0.81697 0.79022 0.84012 1.91026 1.53407 1.60737 1.40035 1.41996 1.13657 1.62775 1.09435 1.26007 0.96300 1.00324 0.91856 1.71606 1.30339 1.20071 0.95377 1.71329 1.08525 1.10266 1.18610 1.31113 0.95234 1.05816 0.98943 1.21564 0.97082 0.90961 0.80341 0.84120 1.23287 1.03380 0.93247 0.98110 1.23303 1.04636 0.96309 0.93577 1.23661 0.97873 0.89856 0.92482 1.88503 1.82982 1.38150 1.20990 1.83853 1.06512 1.56649 1.06850 0.88061 0.85009 0.90182 0.87328 0.87188 0.96187 0.91752 0.92418 0.72228 0.91846 0.85575 0.87506 0.88309 0.87530 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 14.32 67.78 0.97 -2.66 16 2 C -0.19 -5.64 9.85 25.65 0.25 -5.39 16 3 C 0.13 3.64 5.65 85.63 0.48 4.13 16 4 N -0.60 -24.15 2.44 -848.58 -2.07 -26.22 16 5 C 0.24 11.56 4.27 85.64 0.37 11.92 16 6 C -0.53 -31.34 9.83 25.60 0.25 -31.09 16 7 H 0.03 2.01 7.70 -2.91 -0.02 1.98 16 8 C 0.01 0.55 5.47 84.65 0.46 1.01 16 9 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 10 Si 0.95 45.06 27.47 68.60 1.88 46.95 16 11 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.23 -9.55 6.53 99.48 0.65 -8.90 16 14 C 0.69 30.21 8.24 179.05 1.48 31.69 16 15 O -0.58 -32.35 14.60 -3.98 -0.06 -32.41 16 16 N -0.62 -19.87 5.27 -326.97 -1.72 -21.59 16 17 C 0.23 7.49 8.14 179.10 1.46 8.95 16 18 N -0.33 -14.00 9.73 -59.09 -0.58 -14.57 16 19 N -0.25 -9.29 11.65 -47.68 -0.56 -9.84 16 20 C -0.03 -0.70 6.55 88.45 0.58 -0.12 16 21 C 0.16 2.83 4.08 30.32 0.12 2.95 16 22 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 23 C -0.14 -1.69 6.55 31.91 0.21 -1.48 16 24 C -0.14 -1.34 7.16 32.10 0.23 -1.11 16 25 C 0.04 0.63 7.78 72.65 0.57 1.19 16 26 O -0.39 -8.93 11.00 -148.98 -1.64 -10.57 16 27 S 0.22 4.36 23.31 -56.49 -1.32 3.04 16 28 H 0.10 2.12 8.06 -2.91 -0.02 2.09 16 29 H 0.13 1.67 7.84 -2.91 -0.02 1.64 16 30 H 0.08 3.20 7.59 -2.91 -0.02 3.17 16 31 H 0.11 1.90 6.01 -2.39 -0.01 1.89 16 32 H 0.11 2.65 7.89 -2.39 -0.02 2.64 16 33 H 0.02 1.06 6.86 -2.39 -0.02 1.04 16 34 H 0.06 2.75 6.93 -2.39 -0.02 2.73 16 35 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 36 H 0.43 9.42 6.55 -92.71 -0.61 8.81 16 37 H 0.06 1.08 7.84 -2.39 -0.02 1.06 16 38 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.11 0.52 8.14 -2.39 -0.02 0.51 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -94.37 368.52 2.07 -92.30 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.39 Total: 13.87 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 7.43 Total: 20.00 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -4.63 Total: -133.18 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -1.70 Total: -42.97 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.32 Total: 3.04 kcal Total: -94.37 2.07 -92.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603165920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.107 kcal (2) G-P(sol) polarization free energy of solvation -94.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds